Wall clock time and date at job start Mon Mar 30 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47010 * 2 1 4 4 C 1.47089 * 125.56265 * 269.97579 * 3 2 1 5 5 C 1.54088 * 103.77935 * 179.97438 * 4 3 2 6 6 H 1.08993 * 110.64412 * 241.30844 * 5 4 3 7 7 C 1.53005 * 110.52036 * 118.63177 * 5 4 3 8 8 N 1.46893 * 109.47447 * 183.96117 * 7 5 4 9 9 C 1.46894 * 111.00414 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47124 * 34.99171 * 9 8 7 11 11 C 1.52998 * 109.46977 * 274.99900 * 9 8 7 12 12 C 1.50697 * 109.47380 * 155.00096 * 9 8 7 13 13 H 1.07997 * 120.00161 * 95.24631 * 12 9 8 14 14 C 1.37881 * 119.99763 * 275.24159 * 12 9 8 15 15 N 1.31515 * 120.00078 * 355.16415 * 14 12 9 16 16 Si 1.86800 * 119.99987 * 175.16268 * 14 12 9 17 17 H 1.48498 * 109.47113 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46933 * 240.00318 * 16 14 12 19 19 H 1.48498 * 109.47048 * 120.00090 * 16 14 12 20 20 O 1.45697 * 104.00829 * 0.02562 * 5 4 3 21 21 C 1.33772 * 109.47790 * 359.97438 * 20 5 4 22 22 O 1.21509 * 123.07265 * 179.97438 * 21 20 5 23 23 H 1.09006 * 109.46709 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46896 * 299.99709 * 1 2 3 25 25 H 1.08997 * 109.47089 * 60.00019 * 1 2 3 26 26 H 1.08997 * 109.47283 * 240.00509 * 2 1 3 27 27 H 1.08997 * 109.47089 * 119.99981 * 2 1 3 28 28 H 1.09005 * 110.56237 * 61.42707 * 4 3 2 29 29 H 1.08998 * 110.56693 * 298.57805 * 4 3 2 30 30 H 1.09000 * 109.47007 * 63.95838 * 7 5 4 31 31 H 1.09004 * 109.46689 * 303.96248 * 7 5 4 32 32 H 1.00901 * 110.99914 * 303.95693 * 8 7 5 33 33 H 1.09005 * 109.47337 * 295.05168 * 11 9 8 34 34 H 1.08998 * 109.47432 * 55.04903 * 11 9 8 35 35 H 1.09002 * 109.47508 * 175.04684 * 11 9 8 36 36 H 0.97003 * 119.99745 * 5.14313 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3040 2.1876 -1.1965 5 6 2.7800 3.5369 -0.6247 6 1 2.1159 4.3426 -0.9374 7 6 4.2169 3.8280 -1.0624 8 7 4.6798 5.0699 -0.4292 9 6 6.0587 5.3821 -0.8278 10 1 6.2164 5.0749 -1.8617 11 6 7.0345 4.6323 0.0813 12 6 6.2943 6.8652 -0.7028 13 1 6.7405 7.2673 0.1948 14 6 5.9404 7.7089 -1.7343 15 7 5.4858 7.2117 -2.8638 16 14 6.1065 9.5579 -1.5275 17 1 6.6380 9.8588 -0.1740 18 1 4.7754 10.1958 -1.6902 19 1 7.0388 10.0890 -2.5542 20 8 2.7141 3.3512 0.8189 21 6 2.2775 2.1162 1.0902 22 8 2.1302 1.6987 2.2217 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.4010 2.3218 -1.7923 29 1 3.0910 1.7244 -1.7916 30 1 4.2513 3.9381 -2.1463 31 1 4.8628 3.0034 -0.7603 32 1 4.0598 5.8371 -0.6418 33 1 6.9378 5.0024 1.1020 34 1 6.8069 3.5666 0.0582 35 1 8.0542 4.7935 -0.2686 36 1 5.3289 6.2580 -2.9456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:32 Heat of formation + Delta-G solvation = -101.764856 kcal Electronic energy + Delta-G solvation = -17891.680708 eV Core-core repulsion = 14988.902022 eV Total energy + Delta-G solvation = -2902.778686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.62654 -38.76068 -37.72468 -36.93199 -34.53047 -32.75636 -31.73431 -29.56296 -26.86719 -25.77277 -24.87447 -23.36554 -22.28893 -21.48210 -19.08407 -18.60891 -18.00681 -17.43681 -16.48019 -16.28431 -15.79560 -15.65151 -15.32669 -15.26086 -14.83088 -14.53461 -14.35764 -13.60400 -13.41151 -13.20935 -13.11815 -12.90536 -12.68900 -12.63557 -12.38648 -12.13055 -11.99763 -11.88817 -11.68913 -11.56089 -10.77220 -10.46991 -9.97726 -9.08723 -8.64876 -6.39522 1.49185 1.55959 1.59976 1.62208 1.81214 2.47493 2.54389 2.96145 3.20514 3.53135 3.67512 3.90116 4.05056 4.23284 4.37366 4.42506 4.46727 4.51174 4.52263 4.61086 4.79525 4.81855 4.83079 4.86769 5.05164 5.12745 5.27100 5.42393 5.45878 5.87095 6.18348 6.32864 6.48331 6.58487 6.82356 6.92272 7.39483 8.72651 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.041490 B = 0.005035 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.701219 B = 5559.580296 C = 5701.415036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 N -0.623 5.623 4 C 0.080 3.920 5 C 0.074 3.926 6 H 0.124 0.876 7 C 0.051 3.949 8 N -0.687 5.687 9 C 0.186 3.814 10 H -0.012 1.012 11 C -0.111 4.111 12 C -0.605 4.605 13 H 0.040 0.960 14 C -0.018 4.018 15 N -0.929 5.929 16 Si 1.118 2.882 17 H -0.280 1.280 18 H -0.277 1.277 19 H -0.280 1.280 20 O -0.332 6.332 21 C 0.630 3.370 22 O -0.579 6.579 23 H 0.093 0.907 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.115 0.885 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.330 0.670 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 -13.053 -2.332 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 N -0.371 5.371 4 C -0.042 4.042 5 C 0.018 3.982 6 H 0.141 0.859 7 C -0.078 4.078 8 N -0.319 5.319 9 C 0.079 3.921 10 H 0.006 0.994 11 C -0.169 4.169 12 C -0.644 4.644 13 H 0.058 0.942 14 C -0.218 4.218 15 N -0.566 5.566 16 Si 0.941 3.059 17 H -0.206 1.206 18 H -0.203 1.203 19 H -0.206 1.206 20 O -0.241 6.241 21 C 0.385 3.615 22 O -0.468 6.468 23 H 0.112 0.888 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.138 0.862 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.272 -11.995 -1.822 15.270 hybrid contribution 0.210 -1.053 0.044 1.074 sum -9.062 -13.047 -1.778 15.985 Atomic orbital electron populations 1.22157 0.94625 1.03745 1.01859 1.21575 0.95091 0.77167 1.04656 1.48328 1.67777 1.15678 1.05273 1.23044 1.04653 0.88328 0.88212 1.24128 0.98735 0.99844 0.75459 0.85857 1.22326 0.93502 0.95043 0.96967 1.61028 1.04643 1.04442 1.61791 1.19208 0.86271 0.94565 0.92013 0.99403 1.21541 0.98095 0.97943 0.99347 1.22387 1.44173 0.93124 1.04698 0.94174 1.27147 0.92665 1.10285 0.91664 1.70914 1.44593 1.15284 1.25805 0.82888 0.77272 0.69953 0.75825 1.20552 1.20282 1.20607 1.87427 1.79021 1.29767 1.27908 1.18954 0.76440 0.80262 0.85858 1.90935 1.60199 1.72833 1.22874 0.88840 0.94811 0.91127 0.86179 0.90960 0.85464 0.86699 0.92766 0.91481 0.85243 0.94471 0.94123 0.93724 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 71.98 0.74 -1.58 16 2 C 0.13 2.18 6.73 86.38 0.58 2.76 16 3 N -0.62 -14.46 2.96 -951.46 -2.82 -17.28 16 4 C 0.08 1.43 7.34 86.64 0.64 2.07 16 5 C 0.07 2.03 4.07 30.96 0.13 2.15 16 6 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 7 C 0.05 1.72 5.04 86.31 0.44 2.16 16 8 N -0.69 -30.18 6.23 -495.47 -3.09 -33.27 16 9 C 0.19 9.16 2.33 44.17 0.10 9.27 16 10 H -0.01 -0.60 6.33 -2.39 -0.02 -0.62 16 11 C -0.11 -4.93 9.42 71.98 0.68 -4.25 16 12 C -0.60 -33.21 8.29 25.60 0.21 -33.00 16 13 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 14 C -0.02 -0.95 5.45 84.66 0.46 -0.49 16 15 N -0.93 -52.32 13.63 21.45 0.29 -52.03 16 16 Si 1.12 48.81 29.91 68.60 2.05 50.86 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 O -0.33 -12.19 10.72 -47.32 -0.51 -12.70 16 21 C 0.63 21.87 8.85 129.91 1.15 23.02 16 22 O -0.58 -24.47 17.54 19.66 0.34 -24.13 16 23 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.40 7.93 -2.39 -0.02 1.38 16 28 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.12 1.61 7.73 -2.39 -0.02 1.59 16 30 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 31 H 0.07 2.26 7.36 -2.38 -0.02 2.24 16 32 H 0.33 15.40 8.35 -89.69 -0.75 14.65 16 33 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.04 1.61 7.36 -2.39 -0.02 1.59 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.26 14.48 6.66 -92.71 -0.62 13.86 16 Total: -1.00 -71.45 302.78 1.87 -69.59 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.47 Total: 16.86 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.12 Total: 2.10 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -5.61 Total: -102.58 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.16 Total: -36.83 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.86 kcal Total: -71.45 1.87 -69.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.179 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds