Wall clock time and date at job start Mon Mar 30 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47200 * 2 1 4 4 C 1.47086 * 125.55894 * 89.99616 * 3 2 1 5 5 C 1.54088 * 103.90794 * 180.02562 * 4 3 2 6 6 H 1.09006 * 110.52445 * 118.69911 * 5 4 3 7 7 C 1.52999 * 110.52512 * 241.29987 * 5 4 3 8 8 N 1.46902 * 109.47433 * 185.00474 * 7 5 4 9 9 C 1.46900 * 111.00120 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47675 * 34.99118 * 9 8 7 11 11 C 1.52998 * 109.46728 * 274.99388 * 9 8 7 12 12 C 1.50693 * 109.47515 * 154.99550 * 9 8 7 13 13 H 1.08006 * 119.99764 * 5.45379 * 12 9 8 14 14 C 1.37873 * 120.00224 * 185.45903 * 12 9 8 15 15 N 1.31514 * 120.00411 * 9.54297 * 14 12 9 16 16 Si 1.86804 * 120.00138 * 189.54365 * 14 12 9 17 17 H 1.48504 * 109.47171 * 84.99167 * 16 14 12 18 18 H 1.48504 * 109.47399 * 204.99358 * 16 14 12 19 19 H 1.48504 * 109.47148 * 324.99524 * 16 14 12 20 20 O 1.45704 * 104.01031 * 359.92694 * 5 4 3 21 21 C 1.33769 * 109.47431 * 0.02562 * 20 5 4 22 22 O 1.21512 * 123.07688 * 180.02562 * 21 20 5 23 23 H 1.09003 * 109.46958 * 60.00379 * 1 2 3 24 24 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47076 * 299.99837 * 1 2 3 26 26 H 1.09000 * 109.47438 * 239.99780 * 2 1 3 27 27 H 1.08996 * 109.47118 * 120.00292 * 2 1 3 28 28 H 1.09005 * 110.56476 * 61.39825 * 4 3 2 29 29 H 1.08997 * 110.56998 * 298.69067 * 4 3 2 30 30 H 1.09004 * 109.46928 * 305.00141 * 7 5 4 31 31 H 1.08996 * 109.47539 * 64.99328 * 7 5 4 32 32 H 1.00908 * 110.99304 * 303.94566 * 8 7 5 33 33 H 1.09002 * 109.47513 * 183.75677 * 11 9 8 34 34 H 1.08998 * 109.47195 * 303.75768 * 11 9 8 35 35 H 1.09006 * 109.47351 * 63.75931 * 11 9 8 36 36 H 0.97002 * 120.00605 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3035 2.1877 1.1966 5 6 2.7803 3.5381 0.6281 6 1 2.1145 4.3418 0.9429 7 6 4.2160 3.8291 1.0695 8 7 4.6051 5.1714 0.6167 9 6 5.9813 5.4857 1.0230 10 1 6.5869 4.5801 0.9863 11 6 5.9780 6.0395 2.4493 12 6 6.5592 6.5147 0.0860 13 1 5.9369 6.9619 -0.6751 14 6 7.8823 6.8853 0.2002 15 7 8.6871 6.2137 0.9944 16 14 8.5318 8.3414 -0.7732 17 1 8.2635 9.5961 -0.0253 18 1 9.9951 8.1888 -0.9751 19 1 7.8531 8.3970 -2.0929 20 8 2.7172 3.3550 -0.8160 21 6 2.2815 2.1203 -1.0904 22 8 2.1365 1.7046 -2.2229 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 3.0899 1.7242 1.7923 29 1 1.4008 2.3203 1.7930 30 1 4.2789 3.7800 2.1566 31 1 4.8873 3.0896 0.6330 32 1 4.4936 5.2624 -0.3821 33 1 6.9899 6.3349 2.7267 34 1 5.3193 6.9064 2.5009 35 1 5.6225 5.2715 3.1364 36 1 9.6179 6.4746 1.0751 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878821240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:53 Heat of formation + Delta-G solvation = -75.059222 kcal Electronic energy + Delta-G solvation = -17676.015348 eV Core-core repulsion = 14774.394705 eV Total energy + Delta-G solvation = -2901.620643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48727 -37.39252 -35.96287 -35.76704 -32.82766 -31.65920 -30.19783 -27.91288 -25.36283 -24.53259 -23.94940 -22.17661 -20.56665 -19.81469 -17.57359 -17.00704 -16.74556 -15.95846 -15.27195 -14.89020 -14.77088 -14.11933 -13.92391 -13.84656 -13.54519 -13.21001 -12.66729 -12.42930 -12.20843 -11.99202 -11.82397 -11.45339 -11.38261 -10.89940 -10.76301 -10.59158 -10.48630 -10.28662 -10.26595 -9.91589 -9.03908 -8.92034 -8.45934 -7.41511 -6.07896 -4.09897 2.45911 2.81401 3.31553 3.37414 3.41187 3.53091 4.10713 4.41262 4.48064 4.62293 4.94823 5.03358 5.08395 5.17156 5.26511 5.31465 5.36145 5.45866 5.63158 5.82102 5.89327 5.98211 6.12506 6.37068 6.73454 7.01167 7.08602 7.31024 7.42948 7.76444 7.79386 8.08460 8.11736 8.26041 8.59949 8.99591 9.55319 11.01407 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.043906 B = 0.004691 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.572362 B = 5967.095557 C = 6310.628484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.143 3.857 3 N -0.635 5.635 4 C 0.071 3.929 5 C 0.073 3.927 6 H 0.123 0.877 7 C 0.054 3.946 8 N -0.687 5.687 9 C 0.209 3.791 10 H 0.010 0.990 11 C -0.119 4.119 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.274 1.274 20 O -0.317 6.317 21 C 0.642 3.358 22 O -0.530 6.530 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.341 0.659 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.008 0.992 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.647 -10.900 4.139 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.023 3.977 3 N -0.384 5.384 4 C -0.053 4.053 5 C 0.017 3.983 6 H 0.140 0.860 7 C -0.076 4.076 8 N -0.319 5.319 9 C 0.101 3.899 10 H 0.027 0.973 11 C -0.177 4.177 12 C -0.561 4.561 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.199 1.199 20 O -0.227 6.227 21 C 0.397 3.603 22 O -0.415 6.415 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.158 0.842 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.027 0.973 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.725 -10.618 3.994 17.806 hybrid contribution 0.951 0.202 -0.803 1.260 sum -12.774 -10.416 3.192 16.788 Atomic orbital electron populations 1.22201 0.95681 1.02454 1.02678 1.21226 0.94194 0.78778 1.03534 1.48199 1.69301 1.14912 1.06028 1.22866 1.02355 0.90979 0.89101 1.24142 1.00987 0.97099 0.76050 0.85955 1.22253 0.91085 0.93473 1.00806 1.60794 1.29042 1.22134 1.19888 1.19138 0.81857 0.95564 0.93320 0.97269 1.21657 1.01141 0.98180 0.96740 1.21210 0.95271 1.23186 1.16384 0.92030 1.24910 0.96580 0.96677 0.95600 1.69965 1.05243 1.38757 1.38818 0.86572 0.77721 0.83081 0.80414 1.20474 1.21372 1.19862 1.87373 1.79319 1.29558 1.26409 1.18705 0.76330 0.79933 0.85358 1.91002 1.57853 1.71977 1.20694 0.92022 0.91166 0.92356 0.89586 0.89887 0.88965 0.89173 0.89451 0.95025 0.84157 0.91758 0.94540 0.97340 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.14 1.28 6.75 -4.04 -0.03 1.25 16 3 N -0.64 -7.59 2.97 -178.75 -0.53 -8.12 16 4 C 0.07 0.68 7.33 -3.15 -0.02 0.66 16 5 C 0.07 0.96 4.07 -26.16 -0.11 0.85 16 6 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 7 C 0.05 0.88 5.04 -3.82 -0.02 0.86 16 8 N -0.69 -14.17 6.30 -107.95 -0.68 -14.85 16 9 C 0.21 5.17 2.47 -68.87 -0.17 5.00 16 10 H 0.01 0.26 7.74 -51.93 -0.40 -0.14 16 11 C -0.12 -2.78 9.27 37.16 0.34 -2.44 16 12 C -0.52 -14.35 8.48 -34.44 -0.29 -14.64 16 13 H 0.06 1.69 7.69 -52.48 -0.40 1.29 16 14 C 0.06 1.79 5.17 -17.82 -0.09 1.70 16 15 N -0.89 -25.46 12.16 55.43 0.67 -24.79 16 16 Si 0.89 21.41 29.55 -169.99 -5.02 16.39 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 O -0.32 -5.38 10.58 -37.83 -0.40 -5.78 16 21 C 0.64 10.63 8.86 53.85 0.48 11.11 16 22 O -0.53 -10.52 17.56 -19.12 -0.34 -10.86 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.85 7.94 -51.93 -0.41 0.43 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.77 7.73 -51.93 -0.40 0.37 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.28 7.51 -51.93 -0.39 0.89 16 31 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 32 H 0.34 7.37 8.06 -39.29 -0.32 7.05 16 33 H 0.06 1.65 6.83 -51.93 -0.35 1.30 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.01 0.16 7.55 -51.93 -0.39 -0.23 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 302.52 15.07 4.56 4.56 Total: -1.00 -32.16 302.52 -6.85 -39.01 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.58 Total: 1.02 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 0.47 Total: 3.42 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.54 Total: -47.76 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.74 Total: -16.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.16 -6.85 -39.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.046 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds