Wall clock time and date at job start Mon Mar 30 2020 18:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47200 * 2 1 4 4 C 1.47086 * 125.55894 * 89.99616 * 3 2 1 5 5 C 1.54088 * 103.90794 * 180.02562 * 4 3 2 6 6 H 1.09006 * 110.52445 * 118.69911 * 5 4 3 7 7 C 1.52999 * 110.52512 * 241.29987 * 5 4 3 8 8 N 1.46902 * 109.47433 * 185.00474 * 7 5 4 9 9 C 1.46900 * 111.00120 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47675 * 34.99118 * 9 8 7 11 11 C 1.52998 * 109.46728 * 274.99388 * 9 8 7 12 12 C 1.50693 * 109.47515 * 154.99550 * 9 8 7 13 13 H 1.08006 * 119.99764 * 5.45379 * 12 9 8 14 14 C 1.37873 * 120.00224 * 185.45903 * 12 9 8 15 15 N 1.31514 * 120.00411 * 9.54297 * 14 12 9 16 16 Si 1.86804 * 120.00138 * 189.54365 * 14 12 9 17 17 H 1.48504 * 109.47171 * 84.99167 * 16 14 12 18 18 H 1.48504 * 109.47399 * 204.99358 * 16 14 12 19 19 H 1.48504 * 109.47148 * 324.99524 * 16 14 12 20 20 O 1.45704 * 104.01031 * 359.92694 * 5 4 3 21 21 C 1.33769 * 109.47431 * 0.02562 * 20 5 4 22 22 O 1.21512 * 123.07688 * 180.02562 * 21 20 5 23 23 H 1.09003 * 109.46958 * 60.00379 * 1 2 3 24 24 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47076 * 299.99837 * 1 2 3 26 26 H 1.09000 * 109.47438 * 239.99780 * 2 1 3 27 27 H 1.08996 * 109.47118 * 120.00292 * 2 1 3 28 28 H 1.09005 * 110.56476 * 61.39825 * 4 3 2 29 29 H 1.08997 * 110.56998 * 298.69067 * 4 3 2 30 30 H 1.09004 * 109.46928 * 305.00141 * 7 5 4 31 31 H 1.08996 * 109.47539 * 64.99328 * 7 5 4 32 32 H 1.00908 * 110.99304 * 303.94566 * 8 7 5 33 33 H 1.09002 * 109.47513 * 183.75677 * 11 9 8 34 34 H 1.08998 * 109.47195 * 303.75768 * 11 9 8 35 35 H 1.09006 * 109.47351 * 63.75931 * 11 9 8 36 36 H 0.97002 * 120.00605 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3035 2.1877 1.1966 5 6 2.7803 3.5381 0.6281 6 1 2.1145 4.3418 0.9429 7 6 4.2160 3.8291 1.0695 8 7 4.6051 5.1714 0.6167 9 6 5.9813 5.4857 1.0230 10 1 6.5869 4.5801 0.9863 11 6 5.9780 6.0395 2.4493 12 6 6.5592 6.5147 0.0860 13 1 5.9369 6.9619 -0.6751 14 6 7.8823 6.8853 0.2002 15 7 8.6871 6.2137 0.9944 16 14 8.5318 8.3414 -0.7732 17 1 8.2635 9.5961 -0.0253 18 1 9.9951 8.1888 -0.9751 19 1 7.8531 8.3970 -2.0929 20 8 2.7172 3.3550 -0.8160 21 6 2.2815 2.1203 -1.0904 22 8 2.1365 1.7046 -2.2229 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 3.0899 1.7242 1.7923 29 1 1.4008 2.3203 1.7930 30 1 4.2789 3.7800 2.1566 31 1 4.8873 3.0896 0.6330 32 1 4.4936 5.2624 -0.3821 33 1 6.9899 6.3349 2.7267 34 1 5.3193 6.9064 2.5009 35 1 5.6225 5.2715 3.1364 36 1 9.6179 6.4746 1.0751 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:50 Heat of formation + Delta-G solvation = -98.393950 kcal Electronic energy + Delta-G solvation = -17677.027218 eV Core-core repulsion = 14774.394705 eV Total energy + Delta-G solvation = -2902.632513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.61408 -38.72037 -37.48449 -36.92769 -34.66848 -32.72699 -31.56510 -29.36433 -27.30663 -25.79950 -24.88043 -23.35923 -21.92988 -21.39175 -18.72954 -18.58364 -18.01028 -17.34457 -16.83626 -16.29836 -16.06794 -15.50504 -15.33847 -14.78282 -14.58662 -14.54277 -14.25164 -13.67637 -13.29236 -13.17838 -13.08193 -12.89122 -12.71940 -12.66441 -12.32585 -12.25793 -12.10965 -11.95382 -11.66400 -11.52521 -10.94293 -10.55689 -9.94457 -9.14848 -8.19365 -6.28033 1.41199 1.42193 1.48901 1.51624 1.58843 2.40688 2.49329 3.09155 3.12790 3.54837 3.71044 3.91696 4.12727 4.27715 4.42213 4.49091 4.52660 4.58445 4.65824 4.84417 4.86277 4.90172 5.07016 5.11502 5.18687 5.29649 5.41716 5.47608 5.64728 5.83547 6.14730 6.31841 6.37151 6.72391 6.91213 6.94080 7.41318 8.89432 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.043906 B = 0.004691 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.572362 B = 5967.095557 C = 6310.628484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 N -0.623 5.623 4 C 0.078 3.922 5 C 0.074 3.926 6 H 0.141 0.859 7 C 0.055 3.945 8 N -0.683 5.683 9 C 0.211 3.789 10 H -0.025 1.025 11 C -0.106 4.106 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.018 3.982 15 N -0.917 5.917 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.272 1.272 20 O -0.347 6.347 21 C 0.631 3.369 22 O -0.579 6.579 23 H 0.033 0.967 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.013 0.987 32 H 0.331 0.669 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.929 -11.338 5.844 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 N -0.371 5.371 4 C -0.045 4.045 5 C 0.019 3.981 6 H 0.158 0.842 7 C -0.075 4.075 8 N -0.313 5.313 9 C 0.103 3.897 10 H -0.008 1.008 11 C -0.165 4.165 12 C -0.582 4.582 13 H 0.073 0.927 14 C -0.181 4.181 15 N -0.556 5.556 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.197 1.197 20 O -0.257 6.257 21 C 0.386 3.614 22 O -0.468 6.468 23 H 0.052 0.948 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.031 0.969 32 H 0.148 0.852 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.029 -11.072 5.749 19.533 hybrid contribution 1.335 0.283 -1.293 1.880 sum -13.694 -10.789 4.456 17.994 Atomic orbital electron populations 1.22152 0.94488 1.03713 1.01966 1.21569 0.95165 0.77161 1.04576 1.48394 1.67719 1.15638 1.05397 1.23100 1.04898 0.88334 0.88138 1.24269 0.99141 1.00106 0.74585 0.84158 1.22383 0.92752 0.90450 1.01925 1.60735 1.26209 1.25196 1.19161 1.18967 0.83369 0.93507 0.93863 1.00761 1.21462 0.99628 0.99043 0.96334 1.21568 0.95740 1.23967 1.16906 0.92717 1.25662 0.96872 0.98968 0.96648 1.70065 1.05485 1.39975 1.40042 0.85609 0.77106 0.80078 0.79079 1.19631 1.20935 1.19688 1.87329 1.79422 1.30174 1.28770 1.18973 0.76447 0.80111 0.85855 1.90946 1.60086 1.72890 1.22877 0.94805 0.88981 0.90871 0.91233 0.86155 0.86812 0.84936 0.87154 0.96902 0.85224 0.94491 0.94252 0.94381 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 71.98 0.74 -1.37 16 2 C 0.13 2.06 6.75 86.38 0.58 2.64 16 3 N -0.62 -13.58 2.97 -950.79 -2.83 -16.40 16 4 C 0.08 1.20 7.33 86.64 0.64 1.83 16 5 C 0.07 1.79 4.07 30.96 0.13 1.91 16 6 H 0.14 2.90 8.14 -2.38 -0.02 2.88 16 7 C 0.05 1.70 5.04 86.30 0.43 2.13 16 8 N -0.68 -27.97 6.30 -495.46 -3.12 -31.09 16 9 C 0.21 10.55 2.47 44.17 0.11 10.66 16 10 H -0.03 -1.41 7.74 -2.38 -0.02 -1.43 16 11 C -0.11 -4.90 9.27 71.98 0.67 -4.23 16 12 C -0.54 -30.26 8.48 25.60 0.22 -30.05 16 13 H 0.05 3.05 7.69 -2.91 -0.02 3.02 16 14 C 0.02 1.02 5.17 84.65 0.44 1.46 16 15 N -0.92 -53.09 12.16 21.45 0.26 -52.83 16 16 Si 0.96 44.11 29.55 68.60 2.03 46.14 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 O -0.35 -11.76 10.58 -47.30 -0.50 -12.26 16 21 C 0.63 20.93 8.86 129.86 1.15 22.08 16 22 O -0.58 -23.85 17.56 19.65 0.35 -23.50 16 23 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 1.32 7.94 -2.39 -0.02 1.30 16 27 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.11 1.35 7.73 -2.38 -0.02 1.34 16 29 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 2.91 7.51 -2.38 -0.02 2.89 16 31 H 0.01 0.45 8.05 -2.39 -0.02 0.43 16 32 H 0.33 14.57 8.06 -89.69 -0.72 13.85 16 33 H 0.04 1.88 6.83 -2.39 -0.02 1.87 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.48 7.55 -2.38 -0.02 1.46 16 36 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.56 302.52 1.62 -70.94 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.34 Total: 11.94 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.10 Total: 7.08 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -5.69 Total: -100.33 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.16 Total: -35.76 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.56 1.62 -70.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.455 kcal (2) G-P(sol) polarization free energy of solvation -72.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds