Wall clock time and date at job start Mon Mar 30 2020 18:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.46118 * 2 1 4 4 C 1.54476 * 110.51557 * 122.75647 * 2 1 3 5 5 O 1.44427 * 104.80559 * 142.62143 * 4 2 1 6 6 C 1.44429 * 105.27751 * 319.48981 * 5 4 2 7 7 C 1.54480 * 104.79922 * 40.50820 * 6 5 4 8 8 H 1.09000 * 110.62653 * 217.31901 * 7 6 5 9 9 N 1.46504 * 110.51130 * 94.66683 * 7 6 5 10 10 C 1.34777 * 119.99854 * 90.35249 * 9 7 6 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00097 * 180.27545 * 10 9 7 13 13 C 1.46500 * 120.00431 * 179.72742 * 12 10 9 14 14 C 1.52999 * 109.47528 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47004 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00495 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99756 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99843 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99948 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46780 * 120.00270 * 19 17 15 22 22 H 1.48501 * 109.47039 * 240.00381 * 19 17 15 23 23 H 1.09002 * 109.47158 * 182.60442 * 1 2 3 24 24 H 1.08999 * 109.47013 * 302.60077 * 1 2 3 25 25 H 1.08996 * 109.47360 * 62.60113 * 1 2 3 26 26 H 1.09000 * 110.37427 * 261.45685 * 4 2 1 27 27 H 1.09007 * 110.37293 * 23.68541 * 4 2 1 28 28 H 1.08997 * 110.37246 * 281.68278 * 6 5 4 29 29 H 1.08996 * 110.37267 * 159.34100 * 6 5 4 30 30 H 0.97000 * 120.00410 * 270.35974 * 9 7 6 31 31 H 0.97000 * 120.00112 * 359.73180 * 12 10 9 32 32 H 1.09009 * 109.46712 * 300.00517 * 13 12 10 33 33 H 1.08998 * 109.47207 * 59.99494 * 13 12 10 34 34 H 1.09003 * 109.46366 * 299.99640 * 14 13 12 35 35 H 1.08993 * 109.47533 * 59.99613 * 14 13 12 36 36 H 0.97004 * 119.99483 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7828 1.2167 5 8 3.2399 -1.4723 0.7217 6 6 2.8757 -1.9414 -0.5948 7 6 2.0713 -0.7797 -1.2192 8 1 1.2490 -1.1632 -1.8232 9 7 2.9456 0.0739 -2.0274 10 6 3.1186 -0.1878 -3.3381 11 8 2.5487 -1.1321 -3.8499 12 7 3.9272 0.5941 -4.0805 13 6 4.1200 0.3062 -5.5039 14 6 5.0774 1.3357 -6.1075 15 6 5.2752 1.0397 -7.5718 16 1 4.7690 0.2009 -8.0265 17 6 6.1023 1.8398 -8.3313 18 7 6.7191 2.8608 -7.7776 19 14 6.3480 1.4725 -10.1463 20 1 5.5491 0.2786 -10.5223 21 1 5.9040 2.6384 -10.9517 22 1 7.7859 1.2089 -10.4077 23 1 -0.3633 -1.0266 0.0467 24 1 -0.3633 0.5537 0.8657 25 1 -0.3634 0.4729 -0.9123 26 1 2.3465 -0.0965 2.0176 27 1 1.3279 -1.4978 1.5693 28 1 2.2563 -2.8353 -0.5213 29 1 3.7688 -2.1451 -1.1855 30 1 3.4001 0.8274 -1.6192 31 1 4.3817 1.3476 -3.6723 32 1 4.5414 -0.6926 -5.6186 33 1 3.1603 0.3567 -6.0180 34 1 4.6562 2.3345 -5.9927 35 1 6.0371 1.2847 -5.5933 36 1 7.3014 3.4235 -8.3118 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921908086.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:22 Heat of formation + Delta-G solvation = -115.915606 kcal Electronic energy + Delta-G solvation = -17260.591595 eV Core-core repulsion = 14357.199286 eV Total energy + Delta-G solvation = -2903.392309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44343 -40.07495 -36.67571 -35.63550 -34.82094 -33.76459 -31.52815 -29.47888 -27.14263 -26.57005 -24.03928 -22.83048 -21.81490 -21.61581 -19.31867 -18.43346 -17.98936 -16.99806 -16.80789 -16.48872 -16.33995 -16.14167 -15.26402 -15.08120 -14.97576 -14.30525 -14.12080 -13.84819 -13.36338 -13.20591 -12.96248 -12.72887 -12.50573 -12.43414 -12.22819 -11.94573 -11.80601 -11.66271 -11.48583 -11.18952 -10.96846 -10.60795 -10.27292 -9.71367 -8.23925 -6.34118 1.41696 1.42502 1.55660 1.72079 2.11934 2.41735 2.99935 3.11078 3.32019 3.44663 3.79443 3.99215 4.07373 4.30486 4.44457 4.49276 4.52227 4.63301 4.72456 4.74391 4.84613 4.86813 5.00657 5.12939 5.29780 5.31348 5.49504 5.51801 5.59462 5.75998 5.80703 6.03577 6.17364 6.79357 7.09598 7.35338 7.56957 8.88258 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.056432 B = 0.003697 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.052626 B = 7571.577709 C = 7593.903155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 H 0.100 0.900 4 C 0.045 3.955 5 O -0.393 6.393 6 C 0.035 3.965 7 C 0.130 3.870 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.698 3.302 11 O -0.637 6.637 12 N -0.733 5.733 13 C 0.161 3.839 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.410 0.590 31 H 0.407 0.593 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 -3.773 18.739 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.118 0.882 4 C -0.031 4.031 5 O -0.312 6.312 6 C -0.043 4.043 7 C 0.024 3.976 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.398 3.602 11 O -0.519 6.519 12 N -0.388 5.388 13 C 0.036 3.964 14 C -0.014 4.014 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.567 5.567 19 Si 0.790 3.210 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.246 0.754 31 H 0.242 0.758 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.790 -4.517 18.340 21.753 hybrid contribution 0.673 0.664 -0.894 1.301 sum -10.118 -3.853 17.446 20.532 Atomic orbital electron populations 1.21776 0.91979 1.03002 1.02972 1.22819 0.98163 1.00737 0.92618 0.88216 1.23749 0.87616 0.95520 0.96236 1.89140 1.36765 1.74367 1.30971 1.23863 0.99849 0.96814 0.83797 1.22362 0.92271 0.90842 0.92153 0.88998 1.45052 1.51844 1.34500 1.06667 1.16179 0.79823 0.82256 0.81945 1.90859 1.54644 1.33337 1.73092 1.45235 1.49580 1.33224 1.10725 1.21077 0.98611 0.98604 0.78084 1.19135 0.93626 0.93643 0.95031 1.21497 1.28016 1.13528 0.95361 0.92268 1.25875 0.95093 0.94660 1.03569 1.70068 1.30668 1.17886 1.38035 0.85383 0.78075 0.78430 0.79077 1.18941 1.20190 1.20247 0.91689 0.89985 0.92800 0.87084 0.90427 0.90192 0.90656 0.75357 0.75809 0.93865 0.93725 0.97259 0.97360 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.96 71.98 0.65 -0.94 16 2 C -0.12 -1.75 3.48 -9.78 -0.03 -1.78 16 3 H 0.10 1.25 7.70 -2.39 -0.02 1.23 16 4 C 0.05 0.61 7.18 72.48 0.52 1.13 16 5 O -0.39 -8.52 11.65 -148.98 -1.74 -10.26 16 6 C 0.03 0.78 7.35 72.49 0.53 1.32 16 7 C 0.13 2.81 3.13 46.01 0.14 2.95 16 8 H 0.09 2.29 7.14 -2.39 -0.02 2.27 16 9 N -0.72 -18.00 5.09 -452.94 -2.30 -20.31 16 10 C 0.70 24.31 8.57 179.06 1.53 25.84 16 11 O -0.64 -27.36 15.99 -4.01 -0.06 -27.42 16 12 N -0.73 -26.10 5.56 -478.53 -2.66 -28.76 16 13 C 0.16 7.06 5.61 86.38 0.48 7.54 16 14 C 0.02 1.18 5.09 29.85 0.15 1.33 16 15 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 17 C 0.01 0.38 5.46 84.66 0.46 0.84 16 18 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 19 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 0.84 7.83 -2.38 -0.02 0.82 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 30 H 0.41 7.96 8.40 -92.71 -0.78 7.18 16 31 H 0.41 12.31 8.49 -92.71 -0.79 11.52 16 32 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -69.41 303.26 -0.27 -69.68 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.49 Total: 17.70 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 4.67 Total: 7.76 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.68 Total: -103.28 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.80 Total: -37.68 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -69.41 -0.27 -69.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921908086.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.237 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds