Wall clock time and date at job start Mon Mar 30 2020 18:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47225 * 2 1 4 4 C 1.42905 * 113.99904 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.91936 * 26.09468 * 4 3 2 6 6 C 1.55157 * 111.00350 * 150.00256 * 4 3 2 7 7 C 1.54321 * 103.10033 * 153.66229 * 6 4 3 8 8 N 1.47019 * 107.27531 * 337.71659 * 7 6 4 9 9 C 1.34777 * 125.65068 * 178.90607 * 8 7 6 10 10 O 1.21582 * 120.00041 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99820 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99951 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47392 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99602 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00165 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00140 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47014 * 90.00360 * 17 15 13 19 19 H 1.48507 * 109.46827 * 210.00298 * 17 15 13 20 20 H 1.48500 * 109.47154 * 329.99858 * 17 15 13 21 21 C 1.47431 * 108.70142 * 358.94050 * 8 7 6 22 22 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47296 * 300.00035 * 1 2 3 24 24 H 1.09001 * 109.47111 * 59.99955 * 1 2 3 25 25 H 1.09008 * 109.47315 * 239.99985 * 2 1 3 26 26 H 1.09001 * 109.47111 * 120.00045 * 2 1 3 27 27 H 1.09002 * 110.72219 * 35.20926 * 6 4 3 28 28 H 1.09003 * 110.71618 * 272.11539 * 6 4 3 29 29 H 1.09001 * 109.88480 * 97.13771 * 7 6 4 30 30 H 1.09003 * 109.88132 * 218.14177 * 7 6 4 31 31 H 0.96993 * 120.00268 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.47068 * 300.00734 * 12 11 9 33 33 H 1.09002 * 109.46702 * 60.00176 * 12 11 9 34 34 H 0.97000 * 120.00555 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.36190 * 142.96411 * 21 8 7 36 36 H 1.08998 * 110.36491 * 265.18090 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8909 0.5793 -0.4488 6 6 3.8860 2.7546 -0.7248 7 6 5.2492 3.0611 -0.0696 8 7 5.2665 2.3885 1.2375 9 6 6.2928 2.3955 2.1111 10 8 6.1960 1.8015 3.1675 11 7 7.4264 3.0611 1.8135 12 6 8.5418 3.0692 2.7633 13 6 9.6794 3.8781 2.1953 14 1 9.5811 4.3402 1.2242 15 6 10.8451 4.0290 2.9159 16 7 10.9645 3.4666 4.0987 17 14 12.2549 5.0323 2.2121 18 1 12.1081 6.4507 2.6262 19 1 13.5442 4.4989 2.7207 20 1 12.2333 4.9445 0.7298 21 6 3.9755 1.7042 1.4342 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1804 3.5657 -0.5446 28 1 4.0030 2.5775 -1.7939 29 1 6.0556 2.6774 -0.6947 30 1 5.3632 4.1370 0.0629 31 1 7.5035 3.5352 0.9709 32 1 8.2150 3.5129 3.7038 33 1 8.8755 2.0468 2.9406 34 1 11.7848 3.5724 4.6055 35 1 4.1238 0.7554 1.9497 36 1 3.2918 2.3389 1.9980 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922230057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:50 Heat of formation + Delta-G solvation = -79.438077 kcal Electronic energy + Delta-G solvation = -17319.462353 eV Core-core repulsion = 14417.651828 eV Total energy + Delta-G solvation = -2901.810525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86405 -38.33429 -36.30532 -34.14138 -32.39714 -31.73323 -30.24903 -28.55800 -26.83024 -23.70192 -22.96426 -22.09172 -21.18451 -19.34050 -18.07912 -17.29725 -16.13249 -15.79685 -15.38235 -15.19159 -14.68797 -14.49948 -14.12350 -13.28192 -13.18309 -13.11504 -12.68023 -12.63637 -12.34455 -11.97407 -11.77811 -11.61849 -11.54749 -11.31448 -10.94487 -10.87043 -10.78035 -10.28699 -9.75681 -9.41166 -9.35258 -8.71780 -8.38306 -7.71869 -6.13861 -4.20482 2.97276 3.25891 3.31813 3.34389 3.58713 3.91980 4.31601 4.38270 4.54376 4.78626 4.80532 4.96054 4.99861 5.09663 5.13099 5.22160 5.25958 5.48769 5.61592 5.64535 5.68769 5.77290 5.89155 5.91708 5.96059 6.47280 7.01551 7.20363 7.52510 7.58587 7.59264 7.89659 8.04174 8.77275 8.91732 9.33435 9.49157 10.96460 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.060649 B = 0.004008 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.560539 B = 6985.203748 C = 7351.879019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.075 3.925 5 H 0.079 0.921 6 C -0.125 4.125 7 C 0.103 3.897 8 N -0.644 5.644 9 C 0.712 3.288 10 O -0.597 6.597 11 N -0.726 5.726 12 C 0.266 3.734 13 C -0.541 4.541 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.110 3.890 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.387 0.613 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.075 0.925 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.876 -3.842 -12.085 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.016 3.984 5 H 0.097 0.903 6 C -0.163 4.163 7 C -0.021 4.021 8 N -0.386 5.386 9 C 0.414 3.586 10 O -0.476 6.476 11 N -0.378 5.378 12 C 0.145 3.855 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.015 4.015 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.219 0.781 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.813 -4.143 -11.046 20.539 hybrid contribution 1.038 0.548 -0.700 1.367 sum -15.775 -3.595 -11.746 19.993 Atomic orbital electron populations 1.21741 0.93698 1.02246 1.03140 1.22565 0.95602 0.83724 1.00356 1.87905 1.19910 1.26556 1.94794 1.23320 0.81200 0.98541 0.95365 0.90315 1.22686 0.96150 0.97630 0.99814 1.21906 0.97319 0.98016 0.84832 1.47441 1.15274 1.56742 1.19137 1.15669 0.79624 0.80674 0.82674 1.90875 1.81977 1.50290 1.24414 1.45722 1.14716 1.53859 1.23464 1.19005 0.81271 0.97495 0.87688 1.21215 0.99174 1.33249 1.04341 0.91967 1.24945 0.98558 0.95741 0.94780 1.69978 1.27435 1.43164 1.11720 0.86406 0.81193 0.80066 0.79173 1.20471 1.21013 1.19767 1.22380 0.84522 0.98075 0.96476 0.91119 0.91736 0.91921 0.93269 0.93024 0.89527 0.89730 0.91469 0.91238 0.78099 0.95695 0.95695 0.92453 0.90616 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.47 6.49 37.16 0.24 0.71 16 3 O -0.37 -4.11 10.17 -35.23 -0.36 -4.46 16 4 C 0.07 0.83 3.57 -24.32 -0.09 0.74 16 5 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 6 C -0.12 -1.23 6.67 -24.90 -0.17 -1.40 16 7 C 0.10 1.27 6.15 -3.07 -0.02 1.25 16 8 N -0.64 -10.79 3.33 -175.93 -0.59 -11.38 16 9 C 0.71 15.77 8.49 -86.92 -0.74 15.03 16 10 O -0.60 -15.75 16.60 5.29 0.09 -15.66 16 11 N -0.73 -16.33 5.51 -66.41 -0.37 -16.70 16 12 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 13 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.11 1.59 6.67 -2.26 -0.02 1.58 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.37 8.12 -51.92 -0.42 -0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.39 7.52 7.31 -40.82 -0.30 7.22 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 35 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -33.51 304.99 -7.48 -40.99 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.73 Total: 1.39 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.85 Total: 10.91 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.21 Total: -53.77 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.27 Total: -20.13 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.51 -7.48 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922230057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.444 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds