Wall clock time and date at job start Mon Mar 30 2020 18:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47225 * 2 1 4 4 C 1.42905 * 113.99904 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.91936 * 26.09468 * 4 3 2 6 6 C 1.55157 * 111.00350 * 150.00256 * 4 3 2 7 7 C 1.54321 * 103.10033 * 153.66229 * 6 4 3 8 8 N 1.47019 * 107.27531 * 337.71659 * 7 6 4 9 9 C 1.34777 * 125.65068 * 178.90607 * 8 7 6 10 10 O 1.21582 * 120.00041 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99820 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99951 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47392 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99602 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00165 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00140 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47014 * 90.00360 * 17 15 13 19 19 H 1.48507 * 109.46827 * 210.00298 * 17 15 13 20 20 H 1.48500 * 109.47154 * 329.99858 * 17 15 13 21 21 C 1.47431 * 108.70142 * 358.94050 * 8 7 6 22 22 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47296 * 300.00035 * 1 2 3 24 24 H 1.09001 * 109.47111 * 59.99955 * 1 2 3 25 25 H 1.09008 * 109.47315 * 239.99985 * 2 1 3 26 26 H 1.09001 * 109.47111 * 120.00045 * 2 1 3 27 27 H 1.09002 * 110.72219 * 35.20926 * 6 4 3 28 28 H 1.09003 * 110.71618 * 272.11539 * 6 4 3 29 29 H 1.09001 * 109.88480 * 97.13771 * 7 6 4 30 30 H 1.09003 * 109.88132 * 218.14177 * 7 6 4 31 31 H 0.96993 * 120.00268 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.47068 * 300.00734 * 12 11 9 33 33 H 1.09002 * 109.46702 * 60.00176 * 12 11 9 34 34 H 0.97000 * 120.00555 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.36190 * 142.96411 * 21 8 7 36 36 H 1.08998 * 110.36491 * 265.18090 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8909 0.5793 -0.4488 6 6 3.8860 2.7546 -0.7248 7 6 5.2492 3.0611 -0.0696 8 7 5.2665 2.3885 1.2375 9 6 6.2928 2.3955 2.1111 10 8 6.1960 1.8015 3.1675 11 7 7.4264 3.0611 1.8135 12 6 8.5418 3.0692 2.7633 13 6 9.6794 3.8781 2.1953 14 1 9.5811 4.3402 1.2242 15 6 10.8451 4.0290 2.9159 16 7 10.9645 3.4666 4.0987 17 14 12.2549 5.0323 2.2121 18 1 12.1081 6.4507 2.6262 19 1 13.5442 4.4989 2.7207 20 1 12.2333 4.9445 0.7298 21 6 3.9755 1.7042 1.4342 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1804 3.5657 -0.5446 28 1 4.0030 2.5775 -1.7939 29 1 6.0556 2.6774 -0.6947 30 1 5.3632 4.1370 0.0629 31 1 7.5035 3.5352 0.9709 32 1 8.2150 3.5129 3.7038 33 1 8.8755 2.0468 2.9406 34 1 11.7848 3.5724 4.6055 35 1 4.1238 0.7554 1.9497 36 1 3.2918 2.3389 1.9980 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922230057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:49 Heat of formation + Delta-G solvation = -104.052365 kcal Electronic energy + Delta-G solvation = -17320.529709 eV Core-core repulsion = 14417.651828 eV Total energy + Delta-G solvation = -2902.877880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.29039 -39.54093 -37.49236 -36.17814 -34.39567 -32.71649 -31.26140 -29.88240 -28.64443 -25.23300 -23.99198 -23.53515 -22.15633 -21.04574 -19.63813 -18.23553 -18.06872 -17.19985 -16.68799 -16.50343 -16.40623 -15.66402 -15.36972 -14.86824 -14.41368 -14.36755 -14.05928 -13.87333 -13.75507 -13.31794 -13.08625 -12.89999 -12.70724 -12.62186 -12.27905 -12.21312 -12.05335 -11.63396 -11.48427 -11.30903 -10.81201 -10.58108 -10.09469 -9.45420 -8.28637 -6.45679 1.43311 1.47066 1.56044 1.61534 2.13554 2.38322 2.69494 3.06273 3.21145 3.53642 3.60337 3.96790 4.19800 4.21643 4.26960 4.36685 4.51980 4.60548 4.69435 4.76192 4.92116 4.93722 5.04388 5.06787 5.11411 5.24338 5.28240 5.31470 5.47165 5.68474 5.83049 6.15456 6.22760 6.65473 7.12757 7.24327 7.63434 8.83947 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.060649 B = 0.004008 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.560539 B = 6985.203748 C = 7351.879019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.383 6.383 4 C 0.086 3.914 5 H 0.093 0.907 6 C -0.111 4.111 7 C 0.093 3.907 8 N -0.637 5.637 9 C 0.707 3.293 10 O -0.649 6.649 11 N -0.718 5.718 12 C 0.285 3.715 13 C -0.555 4.555 14 H 0.084 0.916 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.988 3.012 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.102 3.898 22 H 0.088 0.912 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.404 0.596 32 H -0.015 1.015 33 H -0.014 1.014 34 H 0.269 0.731 35 H 0.058 0.942 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.194 -2.935 -15.204 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.302 6.302 4 C 0.027 3.973 5 H 0.111 0.889 6 C -0.149 4.149 7 C -0.029 4.029 8 N -0.377 5.377 9 C 0.408 3.592 10 O -0.532 6.532 11 N -0.372 5.372 12 C 0.162 3.838 13 C -0.593 4.593 14 H 0.102 0.898 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.811 3.189 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.178 1.178 21 C -0.022 4.022 22 H 0.107 0.893 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.240 0.760 32 H 0.003 0.997 33 H 0.004 0.996 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.200 -3.223 -14.249 22.566 hybrid contribution 1.013 0.207 0.294 1.074 sum -16.187 -3.016 -13.955 21.584 Atomic orbital electron populations 1.21756 0.92571 1.03395 1.02856 1.22795 0.96591 0.82774 1.00962 1.87905 1.19516 1.28102 1.94631 1.23215 0.81523 0.99919 0.92629 0.88919 1.22686 0.94245 0.96848 1.01126 1.22289 0.99720 0.98239 0.82622 1.47358 1.14329 1.56274 1.19766 1.15825 0.80410 0.80130 0.82803 1.90829 1.83096 1.52257 1.27038 1.45291 1.13981 1.54511 1.23383 1.18448 0.82921 0.94973 0.87436 1.21574 0.99170 1.33256 1.05265 0.89765 1.26093 1.01835 0.96771 0.94908 1.70146 1.28544 1.44778 1.13528 0.85109 0.76604 0.78022 0.79169 1.19587 1.20913 1.17754 1.22596 0.83406 0.96904 0.99312 0.89306 0.92588 0.91602 0.91620 0.93467 0.89075 0.86451 0.89950 0.90334 0.76032 0.99749 0.99581 0.92182 0.92336 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.04 0.69 6.49 71.98 0.47 1.15 16 3 O -0.38 -7.62 10.17 -148.98 -1.51 -9.13 16 4 C 0.09 1.71 3.57 32.16 0.11 1.83 16 5 H 0.09 1.62 7.83 -2.39 -0.02 1.60 16 6 C -0.11 -1.80 6.67 31.78 0.21 -1.59 16 7 C 0.09 2.05 6.15 86.73 0.53 2.59 16 8 N -0.64 -21.11 3.33 -828.78 -2.76 -23.86 16 9 C 0.71 32.16 8.49 179.05 1.52 33.68 16 10 O -0.65 -36.11 16.60 -3.97 -0.07 -36.17 16 11 N -0.72 -32.86 5.51 -482.30 -2.66 -35.52 16 12 C 0.29 16.35 5.43 85.63 0.46 16.81 16 13 C -0.55 -30.76 9.28 25.60 0.24 -30.52 16 14 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 17 Si 0.99 42.51 29.54 68.60 2.03 44.53 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 21 C 0.10 2.93 6.67 87.02 0.58 3.51 16 22 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.80 8.12 -2.38 -0.02 0.78 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.40 15.36 7.31 -92.71 -0.68 14.68 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 33 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.68 304.99 1.03 -74.65 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.38 Total: 15.14 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 5.33 Total: 27.04 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -5.13 Total: -116.06 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.58 Total: -45.30 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -75.68 1.03 -74.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922230057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.401 kcal (2) G-P(sol) polarization free energy of solvation -75.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds