Wall clock time and date at job start Mon Mar 30 2020 18:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00065 * 2 1 4 4 C 1.52998 * 109.46861 * 293.95034 * 3 2 1 5 5 H 1.09004 * 109.47139 * 60.00240 * 4 3 2 6 6 O 1.42897 * 109.47508 * 299.99926 * 4 3 2 7 7 C 1.50699 * 109.46700 * 179.97438 * 4 3 2 8 8 H 1.07999 * 120.00803 * 0.02562 * 7 4 3 9 9 C 1.37881 * 119.99889 * 180.02562 * 7 4 3 10 10 N 1.31520 * 120.00186 * 180.02562 * 9 7 4 11 11 Si 1.86798 * 120.00030 * 0.02562 * 9 7 4 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 C 1.46900 * 110.99754 * 123.95007 * 2 1 3 16 16 H 1.08994 * 112.85198 * 286.38262 * 15 2 1 17 17 C 1.53788 * 113.61105 * 57.57951 * 15 2 1 18 18 C 1.53782 * 87.08093 * 139.97923 * 17 15 2 19 19 H 1.09003 * 113.61512 * 89.11179 * 18 17 15 20 20 C 1.50695 * 113.61761 * 219.93443 * 18 17 15 21 21 N 1.34767 * 120.00485 * 179.97438 * 20 18 17 22 22 O 1.21294 * 119.99593 * 359.97438 * 20 18 17 23 23 C 1.53787 * 113.61457 * 155.18258 * 15 2 1 24 24 H 1.09003 * 109.46596 * 60.00031 * 1 2 3 25 25 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46979 * 300.00306 * 1 2 3 27 27 H 1.09004 * 109.47048 * 173.95218 * 3 2 1 28 28 H 1.08997 * 109.46845 * 53.95382 * 3 2 1 29 29 H 0.96698 * 113.99935 * 300.00528 * 6 4 3 30 30 H 0.96998 * 120.00124 * 180.02562 * 10 9 7 31 31 H 1.08996 * 113.60964 * 254.52224 * 17 15 2 32 32 H 1.08994 * 113.61619 * 25.34875 * 17 15 2 33 33 H 0.97006 * 120.00136 * 0.02562 * 21 20 18 34 34 H 0.97010 * 120.00464 * 179.97438 * 21 20 18 35 35 H 1.09006 * 113.60884 * 334.57367 * 23 15 2 36 36 H 1.09001 * 113.61370 * 105.46691 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0574 -1.3183 5 1 0.5473 2.0844 -1.4266 6 8 2.2010 1.3286 -2.4076 7 6 2.1711 3.4645 -1.3180 8 1 2.7191 3.8326 -0.4633 9 6 1.9651 4.2820 -2.4090 10 7 2.4364 5.5099 -2.4090 11 14 1.0166 3.6457 -3.8871 12 1 -0.4291 3.9354 -3.7098 13 1 1.2161 2.1792 -4.0094 14 1 1.5086 4.3164 -5.1173 15 6 1.9954 -0.7659 1.1377 16 1 1.8826 -0.2440 2.0878 17 6 1.5108 -2.2250 1.1749 18 6 2.9358 -2.6046 1.6111 19 1 3.0814 -2.5856 2.6912 20 6 3.4447 -3.8719 0.9742 21 7 4.6804 -4.3237 1.2659 22 8 2.7421 -4.4854 0.1989 23 6 3.4102 -1.3218 0.9043 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.0798 1.3444 0.1083 28 1 1.5611 1.9273 0.8309 29 1 3.1653 1.2640 -2.3762 30 1 2.2911 6.0851 -3.1764 31 1 0.7557 -2.4148 1.9377 32 1 1.2329 -2.6179 0.1970 33 1 5.2423 -3.8332 1.8863 34 1 5.0079 -5.1397 0.8562 35 1 3.6538 -1.4677 -0.1481 36 1 4.1861 -0.7835 1.4486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931265992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:26 Heat of formation + Delta-G solvation = -63.105624 kcal Electronic energy + Delta-G solvation = -17870.799487 eV Core-core repulsion = 14969.697191 eV Total energy + Delta-G solvation = -2901.102296 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33777 -38.24709 -36.33079 -34.10800 -33.66642 -32.19178 -28.79037 -26.97434 -25.96580 -25.00627 -23.24615 -20.61691 -19.95290 -19.27403 -17.68214 -17.15432 -16.83950 -15.60985 -15.22757 -14.85943 -14.72718 -14.33584 -14.09161 -13.80356 -13.24256 -13.08189 -12.60044 -12.31934 -11.78022 -11.50480 -11.46661 -11.27105 -10.98074 -10.84141 -10.81969 -10.38362 -10.13419 -9.93845 -9.83927 -9.74510 -8.97267 -8.58612 -8.18807 -7.76405 -6.10485 -4.21448 2.53857 3.40788 3.42306 3.52034 3.80792 4.34686 4.47689 4.57595 4.58292 4.77599 4.90356 5.07132 5.25394 5.44277 5.66180 5.75390 5.79870 5.85565 5.95409 6.02967 6.05985 6.15978 6.28414 6.35570 6.49201 6.63133 6.66029 7.18148 7.31250 7.44253 7.63354 7.74342 8.15965 8.32350 8.86357 9.16397 9.55218 11.00188 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.005210 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.286637 B = 5372.722616 C = 5394.418592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.521 5.521 3 C 0.040 3.960 4 C 0.201 3.799 5 H 0.052 0.948 6 O -0.570 6.570 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.084 3.916 10 N -0.895 5.895 11 Si 0.870 3.130 12 H -0.288 1.288 13 H -0.215 1.215 14 H -0.296 1.296 15 C 0.054 3.946 16 H 0.062 0.938 17 C -0.106 4.106 18 C -0.143 4.143 19 H 0.110 0.890 20 C 0.530 3.470 21 N -0.858 5.858 22 O -0.541 6.541 23 C -0.105 4.105 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.353 0.647 30 H 0.264 0.736 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.401 0.599 34 H 0.398 0.602 35 H 0.097 0.903 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -16.100 10.105 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.087 4.087 4 C 0.143 3.857 5 H 0.070 0.930 6 O -0.374 6.374 7 C -0.603 4.603 8 H 0.088 0.912 9 C -0.120 4.120 10 N -0.532 5.532 11 Si 0.696 3.304 12 H -0.215 1.215 13 H -0.137 1.137 14 H -0.223 1.223 15 C -0.055 4.055 16 H 0.080 0.920 17 C -0.144 4.144 18 C -0.164 4.164 19 H 0.128 0.872 20 C 0.315 3.685 21 N -0.421 5.421 22 O -0.417 6.417 23 C -0.144 4.144 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.199 0.801 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.115 0.885 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.885 -16.489 8.936 18.849 hybrid contribution 0.361 0.453 0.543 0.794 sum 2.246 -16.036 9.479 18.763 Atomic orbital electron populations 1.22337 0.88043 1.01127 1.00748 1.62245 1.07427 1.15181 1.39610 1.22829 0.99567 0.86218 1.00109 1.19711 0.94499 0.89378 0.82108 0.93007 1.86668 1.23777 1.77904 1.49091 1.21533 1.38016 0.96243 1.04530 0.91178 1.24979 0.94198 0.94101 0.98759 1.69962 1.44980 1.07255 1.31040 0.87040 0.79015 0.83111 0.81194 1.21510 1.13680 1.22306 1.23048 0.95754 0.93529 0.93206 0.92044 1.22921 0.93645 0.94691 1.03127 1.22676 1.00170 0.92779 1.00826 0.87215 1.20517 0.81174 0.85911 0.80902 1.43906 1.17526 1.30301 1.50384 1.90743 1.56801 1.58639 1.35531 1.22941 0.96938 0.92784 1.01697 0.90852 0.92035 0.96346 0.91358 0.95127 0.80136 0.92633 0.91501 0.87753 0.77112 0.77164 0.88460 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.14 60.07 0.55 0.96 16 2 N -0.52 -8.84 4.59 -233.90 -1.07 -9.92 16 3 C 0.04 0.78 4.53 -3.82 -0.02 0.77 16 4 C 0.20 4.70 2.18 -27.88 -0.06 4.64 16 5 H 0.05 1.26 5.98 -51.93 -0.31 0.95 16 6 O -0.57 -13.23 10.01 -35.23 -0.35 -13.59 16 7 C -0.57 -15.68 9.34 -34.44 -0.32 -16.00 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 10 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 11 Si 0.87 22.11 26.99 -169.99 -4.59 17.52 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.21 -5.38 5.31 56.52 0.30 -5.08 16 14 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 15 C 0.05 0.72 3.18 -66.89 -0.21 0.51 16 16 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.11 -1.31 5.89 -25.91 -0.15 -1.47 16 18 C -0.14 -1.46 4.14 -90.87 -0.38 -1.84 16 19 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 20 C 0.53 6.15 7.64 -10.99 -0.08 6.07 16 21 N -0.86 -6.31 8.87 31.22 0.28 -6.03 16 22 O -0.54 -8.79 16.74 5.54 0.09 -8.70 16 23 C -0.11 -1.24 7.15 -25.82 -0.18 -1.42 16 24 H 0.07 1.30 6.47 -51.93 -0.34 0.96 16 25 H 0.06 0.88 7.00 -51.93 -0.36 0.52 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 28 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.35 7.37 9.04 45.56 0.41 7.79 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.57 7.27 -51.93 -0.38 1.19 16 33 H 0.40 1.75 8.83 -40.82 -0.36 1.39 16 34 H 0.40 2.58 8.93 -40.82 -0.36 2.21 16 35 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 293.93 15.07 4.43 4.43 Total: -1.00 -34.22 293.93 -6.12 -40.34 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.72 Total: 8.06 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.96 Total: -5.46 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.02 Total: -42.59 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.26 Total: -22.29 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.59 Total: 17.52 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.22 -6.12 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931265992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.769 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds