Wall clock time and date at job start Mon Mar 30 2020 18:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00065 * 2 1 4 4 C 1.52998 * 109.46861 * 293.95034 * 3 2 1 5 5 H 1.09004 * 109.47139 * 60.00240 * 4 3 2 6 6 O 1.42897 * 109.47508 * 299.99926 * 4 3 2 7 7 C 1.50699 * 109.46700 * 179.97438 * 4 3 2 8 8 H 1.07999 * 120.00803 * 0.02562 * 7 4 3 9 9 C 1.37881 * 119.99889 * 180.02562 * 7 4 3 10 10 N 1.31520 * 120.00186 * 180.02562 * 9 7 4 11 11 Si 1.86798 * 120.00030 * 0.02562 * 9 7 4 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 C 1.46900 * 110.99754 * 123.95007 * 2 1 3 16 16 H 1.08994 * 112.85198 * 286.38262 * 15 2 1 17 17 C 1.53788 * 113.61105 * 57.57951 * 15 2 1 18 18 C 1.53782 * 87.08093 * 139.97923 * 17 15 2 19 19 H 1.09003 * 113.61512 * 89.11179 * 18 17 15 20 20 C 1.50695 * 113.61761 * 219.93443 * 18 17 15 21 21 N 1.34767 * 120.00485 * 179.97438 * 20 18 17 22 22 O 1.21294 * 119.99593 * 359.97438 * 20 18 17 23 23 C 1.53787 * 113.61457 * 155.18258 * 15 2 1 24 24 H 1.09003 * 109.46596 * 60.00031 * 1 2 3 25 25 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46979 * 300.00306 * 1 2 3 27 27 H 1.09004 * 109.47048 * 173.95218 * 3 2 1 28 28 H 1.08997 * 109.46845 * 53.95382 * 3 2 1 29 29 H 0.96698 * 113.99935 * 300.00528 * 6 4 3 30 30 H 0.96998 * 120.00124 * 180.02562 * 10 9 7 31 31 H 1.08996 * 113.60964 * 254.52224 * 17 15 2 32 32 H 1.08994 * 113.61619 * 25.34875 * 17 15 2 33 33 H 0.97006 * 120.00136 * 0.02562 * 21 20 18 34 34 H 0.97010 * 120.00464 * 179.97438 * 21 20 18 35 35 H 1.09006 * 113.60884 * 334.57367 * 23 15 2 36 36 H 1.09001 * 113.61370 * 105.46691 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0574 -1.3183 5 1 0.5473 2.0844 -1.4266 6 8 2.2010 1.3286 -2.4076 7 6 2.1711 3.4645 -1.3180 8 1 2.7191 3.8326 -0.4633 9 6 1.9651 4.2820 -2.4090 10 7 2.4364 5.5099 -2.4090 11 14 1.0166 3.6457 -3.8871 12 1 -0.4291 3.9354 -3.7098 13 1 1.2161 2.1792 -4.0094 14 1 1.5086 4.3164 -5.1173 15 6 1.9954 -0.7659 1.1377 16 1 1.8826 -0.2440 2.0878 17 6 1.5108 -2.2250 1.1749 18 6 2.9358 -2.6046 1.6111 19 1 3.0814 -2.5856 2.6912 20 6 3.4447 -3.8719 0.9742 21 7 4.6804 -4.3237 1.2659 22 8 2.7421 -4.4854 0.1989 23 6 3.4102 -1.3218 0.9043 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.0798 1.3444 0.1083 28 1 1.5611 1.9273 0.8309 29 1 3.1653 1.2640 -2.3762 30 1 2.2911 6.0851 -3.1764 31 1 0.7557 -2.4148 1.9377 32 1 1.2329 -2.6179 0.1970 33 1 5.2423 -3.8332 1.8863 34 1 5.0079 -5.1397 0.8562 35 1 3.6538 -1.4677 -0.1481 36 1 4.1861 -0.7835 1.4486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931265992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:24 Heat of formation + Delta-G solvation = -93.295266 kcal Electronic energy + Delta-G solvation = -17872.108609 eV Core-core repulsion = 14969.697191 eV Total energy + Delta-G solvation = -2902.411418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.29483 -39.41957 -37.92419 -35.50133 -34.50551 -34.38200 -30.57068 -28.20893 -27.29611 -26.18818 -24.69369 -22.05504 -21.27304 -20.23211 -19.37298 -18.32276 -17.71322 -16.82667 -16.69625 -16.51341 -16.16786 -15.77440 -15.48973 -15.15286 -14.77316 -14.53385 -14.18554 -13.57520 -13.35033 -12.96955 -12.83041 -12.66376 -12.49214 -12.42509 -12.14898 -12.00978 -11.55787 -11.18490 -11.00156 -10.83483 -10.77728 -10.60509 -10.06960 -9.10551 -8.34777 -6.48354 1.39247 1.45320 1.65819 1.76754 2.45001 2.64726 3.03989 3.16196 3.52252 3.65776 3.79142 4.02377 4.15352 4.25570 4.35289 4.46790 4.56063 4.65756 4.72809 4.84147 4.92719 5.00422 5.04308 5.07531 5.20288 5.42168 5.47923 5.53888 5.95433 6.09496 6.18701 6.37547 6.53051 6.64495 7.25064 7.40750 7.41604 8.79352 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.005210 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.286637 B = 5372.722616 C = 5394.418592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.533 5.533 3 C 0.056 3.944 4 C 0.207 3.793 5 H 0.045 0.955 6 O -0.574 6.574 7 C -0.564 4.564 8 H 0.039 0.961 9 C 0.031 3.969 10 N -0.939 5.939 11 Si 0.935 3.065 12 H -0.286 1.286 13 H -0.208 1.208 14 H -0.297 1.297 15 C 0.047 3.953 16 H 0.077 0.923 17 C -0.107 4.107 18 C -0.125 4.125 19 H 0.149 0.851 20 C 0.525 3.475 21 N -0.836 5.836 22 O -0.596 6.596 23 C -0.102 4.102 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.364 0.636 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.419 0.581 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -17.741 11.279 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.257 5.257 3 C -0.072 4.072 4 C 0.148 3.852 5 H 0.063 0.937 6 O -0.380 6.380 7 C -0.602 4.602 8 H 0.058 0.942 9 C -0.168 4.168 10 N -0.579 5.579 11 Si 0.759 3.241 12 H -0.213 1.213 13 H -0.130 1.130 14 H -0.224 1.224 15 C -0.061 4.061 16 H 0.095 0.905 17 C -0.145 4.145 18 C -0.146 4.146 19 H 0.167 0.833 20 C 0.310 3.690 21 N -0.399 5.399 22 O -0.476 6.476 23 C -0.141 4.141 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.211 0.789 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.250 0.750 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.272 -18.145 10.152 20.915 hybrid contribution 0.328 0.940 0.254 1.027 sum 2.599 -17.205 10.405 20.274 Atomic orbital electron populations 1.22328 0.87696 1.02024 1.00163 1.62170 1.07950 1.13539 1.42048 1.22463 0.99793 0.87538 0.97430 1.19528 0.93788 0.87532 0.84302 0.93713 1.86605 1.24842 1.77441 1.49111 1.21869 1.36837 0.98402 1.03123 0.94249 1.25783 0.95227 0.94210 1.01607 1.70075 1.47035 1.08660 1.32117 0.86045 0.77611 0.82592 0.77832 1.21263 1.13041 1.22399 1.23232 0.96890 0.93511 0.92500 0.90547 1.22839 0.95662 0.93727 1.02259 1.22662 0.98054 0.91254 1.02644 0.83315 1.20776 0.81846 0.86055 0.80281 1.43734 1.16293 1.30235 1.49665 1.90729 1.58538 1.60361 1.38017 1.22877 0.96619 0.93698 1.00860 0.92934 0.90400 0.95391 0.91006 0.95630 0.78892 0.92486 0.89785 0.90750 0.75009 0.76423 0.90880 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.14 127.69 1.17 1.97 16 2 N -0.53 -17.34 4.59 -893.91 -4.10 -21.43 16 3 C 0.06 2.12 4.53 86.30 0.39 2.51 16 4 C 0.21 9.55 2.18 29.85 0.07 9.62 16 5 H 0.05 2.16 5.98 -2.39 -0.01 2.14 16 6 O -0.57 -25.99 10.01 -148.98 -1.49 -27.48 16 7 C -0.56 -31.55 9.34 25.60 0.24 -31.31 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C 0.03 1.83 5.47 84.65 0.46 2.29 16 10 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 11 Si 0.93 45.99 26.99 68.60 1.85 47.84 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.21 -9.97 5.31 99.48 0.53 -9.44 16 14 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 15 C 0.05 1.15 3.18 45.45 0.14 1.30 16 16 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 17 C -0.11 -2.42 5.89 31.12 0.18 -2.24 16 18 C -0.12 -2.16 4.14 -10.96 -0.05 -2.21 16 19 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 20 C 0.52 11.10 7.64 87.66 0.67 11.77 16 21 N -0.84 -9.97 8.87 -173.54 -1.54 -11.51 16 22 O -0.60 -19.03 16.74 -3.07 -0.05 -19.08 16 23 C -0.10 -2.14 7.15 31.18 0.22 -1.91 16 24 H 0.05 1.82 6.47 -2.39 -0.02 1.81 16 25 H 0.08 2.12 7.00 -2.39 -0.02 2.11 16 26 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 2.65 7.85 -2.39 -0.02 2.63 16 28 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 29 H 0.36 14.78 9.04 -74.06 -0.67 14.11 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.19 7.27 -2.39 -0.02 2.17 16 33 H 0.42 2.10 8.83 -92.70 -0.82 1.29 16 34 H 0.40 4.29 8.93 -92.70 -0.83 3.46 16 35 H 0.07 1.92 8.10 -2.38 -0.02 1.90 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -74.74 293.93 -2.92 -77.66 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -1.39 Total: 20.35 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 3.50 Total: -8.22 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -5.34 Total: -91.06 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.54 Total: -46.56 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.85 Total: 47.84 kcal Total: -74.74 -2.92 -77.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931265992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.636 kcal (2) G-P(sol) polarization free energy of solvation -74.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds