Wall clock time and date at job start Mon Mar 30 2020 18:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00173 * 2 1 4 4 H 1.08995 * 112.85042 * 21.69333 * 3 2 1 5 5 C 1.53773 * 113.61270 * 250.49434 * 3 2 1 6 6 C 1.53781 * 87.08428 * 270.88249 * 5 3 2 7 7 C 1.53783 * 87.08077 * 334.56983 * 6 5 3 8 8 H 1.09007 * 113.61378 * 270.88249 * 7 6 5 9 9 N 1.46895 * 113.61775 * 139.97512 * 7 6 5 10 10 C 1.46908 * 110.99514 * 65.35680 * 9 7 6 11 11 C 1.46904 * 111.00094 * 189.30458 * 9 7 6 12 12 C 1.50700 * 109.46642 * 170.00438 * 11 9 7 13 13 O 1.21295 * 120.00646 * 359.97438 * 12 11 9 14 14 N 1.34786 * 119.99594 * 180.02562 * 12 11 9 15 15 C 1.37095 * 119.99921 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99862 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99887 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00234 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46975 * 89.99773 * 19 17 15 21 21 H 1.48494 * 109.47443 * 209.99695 * 19 17 15 22 22 H 1.48496 * 109.47209 * 330.00250 * 19 17 15 23 23 H 1.08996 * 109.46944 * 59.99872 * 1 2 3 24 24 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47121 * 300.00032 * 1 2 3 26 26 H 1.09005 * 113.61628 * 156.33729 * 5 3 2 27 27 H 1.08994 * 113.61807 * 25.42843 * 5 3 2 28 28 H 1.09003 * 113.61499 * 89.11650 * 6 5 3 29 29 H 1.08995 * 113.62336 * 220.02065 * 6 5 3 30 30 H 1.08994 * 109.47182 * 65.83582 * 10 9 7 31 31 H 1.09010 * 109.46779 * 185.83581 * 10 9 7 32 32 H 1.08995 * 109.46863 * 305.82999 * 10 9 7 33 33 H 1.08992 * 109.47251 * 290.00190 * 11 9 7 34 34 H 1.08998 * 109.46505 * 50.00664 * 11 9 7 35 35 H 0.97002 * 119.99545 * 0.02562 * 14 12 11 36 36 H 0.97003 * 120.00309 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3298 2.0717 0.3713 5 6 2.6906 1.6768 -1.3281 6 6 3.9724 1.0480 -0.7567 7 6 3.4077 1.3575 0.6398 8 1 3.6809 2.3448 1.0123 9 7 3.6459 0.2903 1.6207 10 6 5.0815 0.1345 1.8908 11 6 2.9007 0.5400 2.8618 12 6 2.9694 -0.6805 3.7430 13 8 3.5786 -1.6621 3.3734 14 7 2.3528 -0.6818 4.9416 15 6 2.4147 -1.7923 5.7431 16 1 2.9579 -2.6660 5.4143 17 6 1.7796 -1.7934 6.9789 18 7 1.8394 -2.8577 7.7475 19 14 0.8407 -0.2821 7.5480 20 1 -0.5718 -0.3792 7.1001 21 1 0.8856 -0.2003 9.0300 22 1 1.4619 0.9347 6.9660 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 2.7678 2.7514 -1.4937 27 1 2.2886 1.1426 -2.1890 28 1 4.0655 -0.0182 -0.9636 29 1 4.8771 1.6070 -0.9956 30 1 5.4581 1.0315 2.3822 31 1 5.2377 -0.7278 2.5392 32 1 5.6137 -0.0161 0.9516 33 1 3.3392 1.3903 3.3840 34 1 1.8598 0.7577 2.6229 35 1 1.8647 0.1028 5.2367 36 1 1.3957 -2.8587 8.6101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934123240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:04 Heat of formation + Delta-G solvation = -36.603079 kcal Electronic energy + Delta-G solvation = -18107.271452 eV Core-core repulsion = 15207.318392 eV Total energy + Delta-G solvation = -2899.953060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85512 -38.26571 -36.21984 -34.47765 -33.61225 -31.59761 -28.11559 -26.80204 -25.96255 -24.78991 -24.16360 -22.03976 -19.35624 -19.26047 -18.17161 -16.67447 -16.36279 -15.34168 -15.19484 -14.98709 -14.80076 -14.21856 -13.99190 -13.57485 -13.24686 -13.12827 -12.82038 -12.33859 -11.97048 -11.91422 -11.60804 -11.41291 -11.29553 -11.05825 -10.82776 -10.74526 -10.55421 -10.10457 -9.91913 -9.47771 -9.40293 -8.43791 -8.10764 -7.77973 -6.25124 -3.75779 3.05732 3.09896 3.17675 3.68422 3.84265 4.14316 4.18376 4.55768 4.60048 4.79051 4.92960 5.04891 5.27264 5.31863 5.36804 5.43062 5.47183 5.65248 5.70470 5.77427 5.81761 5.87775 5.90422 5.97718 6.04916 6.22425 6.31255 6.62876 7.25299 7.35643 7.55922 7.67123 8.22272 8.68104 9.02701 9.49837 9.93082 10.88386 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.006121 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.954483 B = 4573.146512 C = 4934.654374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C 0.075 3.925 4 H 0.066 0.934 5 C -0.163 4.163 6 C -0.118 4.118 7 C 0.050 3.950 8 H 0.068 0.932 9 N -0.492 5.492 10 C 0.022 3.978 11 C 0.048 3.952 12 C 0.459 3.541 13 O -0.555 6.555 14 N -0.596 5.596 15 C -0.301 4.301 16 H 0.119 0.881 17 C 0.040 3.960 18 N -0.885 5.885 19 Si 0.878 3.122 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.271 1.271 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.011 0.989 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.369 0.631 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 13.351 -14.377 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C 0.016 3.984 4 H 0.084 0.916 5 C -0.201 4.201 6 C -0.156 4.156 7 C -0.059 4.059 8 H 0.085 0.915 9 N -0.216 5.216 10 C -0.126 4.126 11 C -0.084 4.084 12 C 0.244 3.756 13 O -0.436 6.436 14 N -0.236 5.236 15 C -0.430 4.430 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.525 5.525 19 Si 0.705 3.295 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.196 1.196 23 H 0.053 0.947 24 H 0.105 0.895 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.201 0.799 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.874 11.941 -14.620 18.897 hybrid contribution -0.796 2.225 1.061 2.590 sum -1.670 14.166 -13.559 19.680 Atomic orbital electron populations 1.22810 0.81778 1.02905 0.99246 1.88109 1.18537 1.24695 1.94203 1.23125 0.93774 0.85899 0.95635 0.91647 1.23335 0.98024 1.00628 0.98139 1.22866 0.96382 1.02280 0.94032 1.23525 0.95811 0.93593 0.92945 0.91462 1.61735 1.08945 1.41595 1.09281 1.22530 0.87036 1.01463 1.01581 1.21825 0.99416 0.96331 0.90837 1.19647 0.84057 0.89456 0.82426 1.90520 1.44760 1.35362 1.73005 1.42217 1.48858 1.15650 1.16837 1.19429 1.32051 0.93998 0.97487 0.86294 1.25013 0.97936 0.97192 0.96079 1.69623 1.43655 1.27964 1.11265 0.86690 0.80802 0.82731 0.79263 1.19690 1.20263 1.19611 0.94679 0.89475 0.94234 0.89750 0.90560 0.88601 0.91885 0.97035 0.88577 0.92114 0.93916 0.89772 0.79878 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.86 101.05 1.10 1.45 16 2 O -0.34 -5.15 10.19 -35.23 -0.36 -5.51 16 3 C 0.08 0.93 3.60 -25.92 -0.09 0.84 16 4 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 5 C -0.16 -1.65 7.91 -25.92 -0.21 -1.85 16 6 C -0.12 -1.38 6.77 -25.92 -0.18 -1.56 16 7 C 0.05 0.67 3.12 -66.90 -0.21 0.46 16 8 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 9 N -0.49 -8.51 4.01 -235.34 -0.94 -9.46 16 10 C 0.02 0.36 9.11 60.07 0.55 0.91 16 11 C 0.05 0.86 5.39 -4.97 -0.03 0.83 16 12 C 0.46 10.88 7.52 -10.98 -0.08 10.79 16 13 O -0.56 -15.33 13.88 5.54 0.08 -15.26 16 14 N -0.60 -14.65 5.09 -10.96 -0.06 -14.71 16 15 C -0.30 -8.69 10.16 -14.94 -0.15 -8.84 16 16 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 17 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 18 N -0.88 -26.26 13.96 55.50 0.77 -25.48 16 19 Si 0.88 19.74 27.74 -169.99 -4.71 15.02 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 23 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.01 0.17 8.13 -51.93 -0.42 -0.25 16 31 H 0.10 1.96 5.92 -51.92 -0.31 1.65 16 32 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 33 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.08 1.40 7.53 -51.93 -0.39 1.01 16 35 H 0.37 8.00 5.76 -40.82 -0.24 7.77 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -33.30 297.03 -5.65 -38.95 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.50 Total: 7.91 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 0.60 Total: 4.06 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.23 Total: -49.65 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.28 Total: -20.76 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.30 -5.65 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934123240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.346 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds