Wall clock time and date at job start Mon Mar 30 2020 18:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00173 * 2 1 4 4 H 1.08995 * 112.85042 * 21.69333 * 3 2 1 5 5 C 1.53773 * 113.61270 * 250.49434 * 3 2 1 6 6 C 1.53781 * 87.08428 * 270.88249 * 5 3 2 7 7 C 1.53783 * 87.08077 * 334.56983 * 6 5 3 8 8 H 1.09007 * 113.61378 * 270.88249 * 7 6 5 9 9 N 1.46895 * 113.61775 * 139.97512 * 7 6 5 10 10 C 1.46908 * 110.99514 * 65.35680 * 9 7 6 11 11 C 1.46904 * 111.00094 * 189.30458 * 9 7 6 12 12 C 1.50700 * 109.46642 * 170.00438 * 11 9 7 13 13 O 1.21295 * 120.00646 * 359.97438 * 12 11 9 14 14 N 1.34786 * 119.99594 * 180.02562 * 12 11 9 15 15 C 1.37095 * 119.99921 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99862 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99887 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00234 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46975 * 89.99773 * 19 17 15 21 21 H 1.48494 * 109.47443 * 209.99695 * 19 17 15 22 22 H 1.48496 * 109.47209 * 330.00250 * 19 17 15 23 23 H 1.08996 * 109.46944 * 59.99872 * 1 2 3 24 24 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47121 * 300.00032 * 1 2 3 26 26 H 1.09005 * 113.61628 * 156.33729 * 5 3 2 27 27 H 1.08994 * 113.61807 * 25.42843 * 5 3 2 28 28 H 1.09003 * 113.61499 * 89.11650 * 6 5 3 29 29 H 1.08995 * 113.62336 * 220.02065 * 6 5 3 30 30 H 1.08994 * 109.47182 * 65.83582 * 10 9 7 31 31 H 1.09010 * 109.46779 * 185.83581 * 10 9 7 32 32 H 1.08995 * 109.46863 * 305.82999 * 10 9 7 33 33 H 1.08992 * 109.47251 * 290.00190 * 11 9 7 34 34 H 1.08998 * 109.46505 * 50.00664 * 11 9 7 35 35 H 0.97002 * 119.99545 * 0.02562 * 14 12 11 36 36 H 0.97003 * 120.00309 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3298 2.0717 0.3713 5 6 2.6906 1.6768 -1.3281 6 6 3.9724 1.0480 -0.7567 7 6 3.4077 1.3575 0.6398 8 1 3.6809 2.3448 1.0123 9 7 3.6459 0.2903 1.6207 10 6 5.0815 0.1345 1.8908 11 6 2.9007 0.5400 2.8618 12 6 2.9694 -0.6805 3.7430 13 8 3.5786 -1.6621 3.3734 14 7 2.3528 -0.6818 4.9416 15 6 2.4147 -1.7923 5.7431 16 1 2.9579 -2.6660 5.4143 17 6 1.7796 -1.7934 6.9789 18 7 1.8394 -2.8577 7.7475 19 14 0.8407 -0.2821 7.5480 20 1 -0.5718 -0.3792 7.1001 21 1 0.8856 -0.2003 9.0300 22 1 1.4619 0.9347 6.9660 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 2.7678 2.7514 -1.4937 27 1 2.2886 1.1426 -2.1890 28 1 4.0655 -0.0182 -0.9636 29 1 4.8771 1.6070 -0.9956 30 1 5.4581 1.0315 2.3822 31 1 5.2377 -0.7278 2.5392 32 1 5.6137 -0.0161 0.9516 33 1 3.3392 1.3903 3.3840 34 1 1.8598 0.7577 2.6229 35 1 1.8647 0.1028 5.2367 36 1 1.3957 -2.8587 8.6101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934123240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:02 Heat of formation + Delta-G solvation = -63.041059 kcal Electronic energy + Delta-G solvation = -18108.417889 eV Core-core repulsion = 15207.318392 eV Total energy + Delta-G solvation = -2901.099497 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.97444 -39.98994 -37.38970 -36.08647 -35.24282 -33.73485 -29.65711 -27.78347 -27.17955 -26.23425 -25.42575 -23.29781 -21.24484 -20.30070 -20.15548 -17.97803 -17.51695 -16.85504 -16.56680 -16.53116 -16.02129 -15.63042 -15.39862 -14.92177 -14.70514 -14.50594 -14.31386 -14.07294 -13.49450 -13.14447 -12.85267 -12.59959 -12.57072 -12.46318 -12.39843 -12.00966 -11.86872 -11.63021 -11.46703 -10.99365 -10.45136 -10.23717 -10.19369 -9.07585 -8.40044 -6.00423 1.29268 1.35236 1.43908 1.98475 2.23421 2.59936 2.95721 3.15651 3.29657 3.68560 3.76285 3.92788 4.12189 4.18700 4.34780 4.41059 4.44780 4.56828 4.59777 4.61923 4.66335 4.73823 4.89859 4.96007 5.09659 5.19470 5.30970 5.43907 5.54936 5.92997 6.07434 6.24222 6.56635 6.62852 6.90664 7.41768 8.00479 8.77964 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.006121 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.954483 B = 4573.146512 C = 4934.654374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.065 3.935 4 H 0.088 0.912 5 C -0.146 4.146 6 C -0.119 4.119 7 C 0.044 3.956 8 H 0.095 0.905 9 N -0.519 5.519 10 C 0.028 3.972 11 C 0.062 3.938 12 C 0.454 3.546 13 O -0.604 6.604 14 N -0.594 5.594 15 C -0.326 4.326 16 H 0.054 0.946 17 C -0.015 4.015 18 N -0.936 5.936 19 Si 0.964 3.036 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.233 1.233 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.388 0.612 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 17.714 -15.251 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.296 6.296 3 C 0.006 3.994 4 H 0.106 0.894 5 C -0.184 4.184 6 C -0.157 4.157 7 C -0.064 4.064 8 H 0.112 0.888 9 N -0.244 5.244 10 C -0.120 4.120 11 C -0.069 4.069 12 C 0.242 3.758 13 O -0.487 6.487 14 N -0.237 5.237 15 C -0.455 4.455 16 H 0.072 0.928 17 C -0.214 4.214 18 N -0.577 5.577 19 Si 0.784 3.216 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.156 1.156 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.133 0.867 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.223 0.777 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.168 16.327 -15.525 22.634 hybrid contribution -0.313 0.741 1.256 1.492 sum -2.481 17.068 -14.268 22.384 Atomic orbital electron populations 1.22905 0.80541 1.02910 1.00673 1.88056 1.20170 1.26864 1.94528 1.23365 0.93702 0.85361 0.96956 0.89412 1.23301 0.95942 1.02233 0.96887 1.22826 0.98315 1.01041 0.93525 1.23795 0.97088 0.93415 0.92118 0.88784 1.61643 1.08736 1.44478 1.09495 1.22358 0.87680 1.00319 1.01611 1.21698 1.01231 0.93549 0.90470 1.20880 0.81927 0.90711 0.82269 1.90510 1.46308 1.37922 1.73983 1.42036 1.49657 1.15060 1.16899 1.18994 1.33171 0.94073 0.99291 0.92816 1.26097 0.98405 1.01648 0.95217 1.69809 1.44756 1.31164 1.11990 0.85375 0.79277 0.78238 0.78694 1.18094 1.19887 1.15600 0.92277 0.90358 0.93657 0.86656 0.90751 0.91527 0.89858 0.95072 0.93191 0.90582 0.90846 0.87631 0.77675 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.86 113.37 1.23 1.80 16 2 O -0.38 -10.92 10.19 -148.98 -1.52 -12.44 16 3 C 0.06 1.39 3.60 31.12 0.11 1.50 16 4 H 0.09 1.46 7.89 -2.39 -0.02 1.45 16 5 C -0.15 -2.40 7.91 31.12 0.25 -2.15 16 6 C -0.12 -2.48 6.77 31.12 0.21 -2.27 16 7 C 0.04 1.02 3.12 45.44 0.14 1.16 16 8 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 9 N -0.52 -17.18 4.01 -898.49 -3.61 -20.79 16 10 C 0.03 0.93 9.11 127.69 1.16 2.09 16 11 C 0.06 2.10 5.39 85.56 0.46 2.56 16 12 C 0.45 21.79 7.52 87.66 0.66 22.44 16 13 O -0.60 -35.15 13.88 -3.08 -0.04 -35.19 16 14 N -0.59 -29.24 5.09 -306.97 -1.56 -30.80 16 15 C -0.33 -19.66 10.16 84.04 0.85 -18.81 16 16 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 17 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 18 N -0.94 -57.49 13.96 21.66 0.30 -57.19 16 19 Si 0.96 39.53 27.74 68.60 1.90 41.44 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 0.88 8.13 -2.39 -0.02 0.86 16 31 H 0.05 2.11 5.92 -2.38 -0.01 2.10 16 32 H 0.08 2.20 7.31 -2.39 -0.02 2.18 16 33 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 34 H 0.11 3.16 7.53 -2.39 -0.02 3.14 16 35 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 36 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -78.89 297.03 1.50 -77.39 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.47 Total: 29.65 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.55 Total: 7.93 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.87 Total: -108.79 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.56 Total: -47.63 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.44 kcal Total: -78.89 1.50 -77.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934123240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.354 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds