Wall clock time and date at job start Mon Mar 30 2020 18:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99647 * 2 1 4 4 H 1.09001 * 109.47665 * 330.00388 * 3 2 1 5 5 C 1.53003 * 109.47383 * 90.00078 * 3 2 1 6 6 C 1.50704 * 109.47351 * 209.99960 * 3 2 1 7 7 O 1.21277 * 119.99685 * 350.79221 * 6 3 2 8 8 N 1.34777 * 119.99904 * 170.79069 * 6 3 2 9 9 C 1.47025 * 125.65131 * 354.98152 * 8 6 3 10 10 C 1.54323 * 107.26980 * 181.09528 * 9 8 6 11 11 C 1.55158 * 102.94221 * 22.19432 * 10 9 8 12 12 H 1.09000 * 111.03183 * 82.59143 * 11 10 9 13 13 N 1.46501 * 111.00181 * 206.42197 * 11 10 9 14 14 C 1.36937 * 120.00153 * 267.19773 * 13 11 10 15 15 H 1.08008 * 119.99864 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00264 * 180.02562 * 14 13 11 17 17 N 1.31618 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46909 * 89.99619 * 18 16 14 20 20 H 1.48494 * 109.47086 * 209.99739 * 18 16 14 21 21 H 1.48502 * 109.46727 * 329.99791 * 18 16 14 22 22 C 1.47422 * 125.64326 * 175.02784 * 8 6 3 23 23 H 1.08993 * 109.46872 * 60.00248 * 1 2 3 24 24 H 1.09000 * 109.46642 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47098 * 299.99540 * 1 2 3 26 26 H 1.09002 * 109.46820 * 65.35577 * 5 3 2 27 27 H 1.08997 * 109.47591 * 185.36294 * 5 3 2 28 28 H 1.09007 * 109.46730 * 305.36168 * 5 3 2 29 29 H 1.08994 * 109.88146 * 300.51767 * 9 8 6 30 30 H 1.08998 * 109.87918 * 61.52501 * 9 8 6 31 31 H 1.09000 * 110.71901 * 263.82747 * 10 9 8 32 32 H 1.09000 * 110.71732 * 140.55828 * 10 9 8 33 33 H 0.96994 * 119.99957 * 86.92601 * 13 11 10 34 34 H 0.96999 * 120.00041 * 180.02562 * 17 16 14 35 35 H 1.08998 * 110.37187 * 36.99497 * 22 8 6 36 36 H 1.08999 * 110.36685 * 274.66735 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2641 -0.7104 7 8 3.8258 0.1985 -1.0235 8 7 3.9852 2.4112 -0.9978 9 6 3.4654 3.7677 -0.7714 10 6 4.5355 4.7585 -1.2760 11 6 5.3571 3.9030 -2.2762 12 1 4.8717 3.8679 -3.2516 13 7 6.7286 4.4046 -2.3932 14 6 7.0458 5.3093 -3.3710 15 1 6.2848 5.6534 -4.0558 16 6 8.3454 5.7841 -3.4821 17 7 9.2727 5.3651 -2.6473 18 14 8.7779 7.0187 -4.8156 19 1 8.5833 8.3963 -4.2965 20 1 10.1959 6.8369 -5.2174 21 1 7.8984 6.8043 -5.9927 22 6 5.3304 2.5134 -1.5922 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.9560 1.1332 1.9279 27 1 2.5715 2.8024 1.4440 28 1 1.2732 1.7107 1.9833 29 1 2.5389 3.9074 -1.3281 30 1 3.2854 3.9229 0.2924 31 1 5.1639 5.0995 -0.4532 32 1 4.0700 5.6037 -1.7830 33 1 7.4111 4.0988 -1.7755 34 1 10.1808 5.6972 -2.7248 35 1 5.4804 1.7247 -2.3294 36 1 6.0934 2.4582 -0.8157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967417719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:31 Heat of formation + Delta-G solvation = -62.157227 kcal Electronic energy + Delta-G solvation = -17707.090021 eV Core-core repulsion = 14806.028850 eV Total energy + Delta-G solvation = -2901.061171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.09872 -38.11599 -36.89363 -34.21759 -32.21413 -31.03232 -29.56991 -27.71651 -27.01608 -24.66520 -23.32662 -22.37580 -20.15471 -19.30629 -17.48197 -17.33436 -16.62550 -16.01586 -15.41927 -15.26683 -14.46889 -14.30783 -13.85738 -13.51938 -13.29147 -12.96946 -12.79249 -12.58681 -12.40144 -12.01493 -11.82540 -11.61006 -11.29707 -11.19721 -10.87858 -10.73180 -10.31126 -10.11536 -10.09470 -9.80125 -9.42685 -8.99165 -8.42882 -7.08209 -5.84933 -3.15807 2.71512 2.79913 3.39389 3.44927 3.46741 3.81773 4.45862 4.52448 4.70398 4.81984 4.99954 5.05894 5.11251 5.15066 5.26727 5.40545 5.44135 5.48465 5.55095 5.59878 5.72636 5.89456 5.98158 6.11821 6.22512 6.33432 6.49339 6.57806 6.85332 6.89325 7.62761 7.68328 8.30005 8.32828 9.44079 9.97694 10.32647 11.37210 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.057909 B = 0.004418 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.399390 B = 6335.954378 C = 6432.325560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.074 3.926 4 H 0.083 0.917 5 C -0.171 4.171 6 C 0.527 3.473 7 O -0.525 6.525 8 N -0.612 5.612 9 C 0.096 3.904 10 C -0.156 4.156 11 C 0.172 3.828 12 H 0.067 0.933 13 N -0.714 5.714 14 C -0.247 4.247 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.098 3.902 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.077 0.923 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.357 -3.977 7.096 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.013 3.987 4 H 0.101 0.899 5 C -0.229 4.229 6 C 0.313 3.687 7 O -0.400 6.400 8 N -0.348 5.348 9 C -0.027 4.027 10 C -0.197 4.197 11 C 0.060 3.940 12 H 0.085 0.915 13 N -0.354 5.354 14 C -0.377 4.377 15 H 0.091 0.909 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.025 4.025 23 H 0.061 0.939 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.221 0.779 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.975 -4.696 6.779 18.872 hybrid contribution 0.225 0.961 -0.392 1.062 sum -16.750 -3.735 6.388 18.311 Atomic orbital electron populations 1.22870 0.80831 1.03123 0.99964 1.88052 1.19466 1.25417 1.94951 1.21885 0.93566 0.86445 0.96804 0.89905 1.22256 1.03340 1.02462 0.94831 1.19949 0.86138 0.83023 0.79547 1.90713 1.67779 1.28977 1.52577 1.48376 1.18746 1.05423 1.62275 1.22232 0.98134 0.82079 1.00251 1.23432 0.97066 0.97831 1.01351 1.21296 0.87923 0.89136 0.95671 0.91474 1.42263 1.04134 1.51082 1.37873 1.19228 0.94052 1.16711 1.07755 0.90943 1.24773 0.95936 1.00587 0.99270 1.69661 1.02139 1.47064 1.38855 0.86164 0.77516 0.81039 0.81288 1.21623 1.21694 1.20654 1.22623 0.82339 0.99914 0.97609 0.93877 0.89220 0.93902 0.91135 0.90471 0.91290 0.91951 0.91737 0.90491 0.90623 0.77907 0.93313 0.90442 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.88 9.90 -54.97 -0.54 -5.42 16 3 C 0.07 0.91 2.53 -27.88 -0.07 0.84 16 4 H 0.08 0.81 7.60 -51.93 -0.39 0.41 16 5 C -0.17 -1.68 9.40 37.16 0.35 -1.34 16 6 C 0.53 8.64 7.17 -10.98 -0.08 8.56 16 7 O -0.53 -10.94 16.76 -14.18 -0.24 -11.17 16 8 N -0.61 -9.48 3.33 -170.52 -0.57 -10.04 16 9 C 0.10 1.20 6.17 -3.06 -0.02 1.18 16 10 C -0.16 -2.41 6.65 -24.90 -0.17 -2.58 16 11 C 0.17 3.27 3.71 -65.78 -0.24 3.02 16 12 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 13 N -0.71 -17.18 5.24 -51.35 -0.27 -17.45 16 14 C -0.25 -6.59 9.96 -15.06 -0.15 -6.74 16 15 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 18 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.10 1.76 6.58 -2.53 -0.02 1.74 16 23 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.29 7.78 -51.93 -0.40 -0.12 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.67 5.70 -51.93 -0.30 0.38 16 28 H 0.07 0.53 7.78 -51.93 -0.40 0.13 16 29 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.06 0.67 5.92 -51.93 -0.31 0.36 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.39 9.94 7.76 -40.82 -0.32 9.62 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 36 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -32.52 299.18 -6.26 -38.78 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.45 Total: 5.05 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 0.60 Total: 5.69 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.11 Total: -54.18 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.78 Total: -16.60 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.52 -6.26 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967417719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.381 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds