Wall clock time and date at job start Mon Mar 30 2020 18:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99647 * 2 1 4 4 H 1.09001 * 109.47665 * 330.00388 * 3 2 1 5 5 C 1.53003 * 109.47383 * 90.00078 * 3 2 1 6 6 C 1.50704 * 109.47351 * 209.99960 * 3 2 1 7 7 O 1.21277 * 119.99685 * 350.79221 * 6 3 2 8 8 N 1.34777 * 119.99904 * 170.79069 * 6 3 2 9 9 C 1.47025 * 125.65131 * 354.98152 * 8 6 3 10 10 C 1.54323 * 107.26980 * 181.09528 * 9 8 6 11 11 C 1.55158 * 102.94221 * 22.19432 * 10 9 8 12 12 H 1.09000 * 111.03183 * 82.59143 * 11 10 9 13 13 N 1.46501 * 111.00181 * 206.42197 * 11 10 9 14 14 C 1.36937 * 120.00153 * 267.19773 * 13 11 10 15 15 H 1.08008 * 119.99864 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00264 * 180.02562 * 14 13 11 17 17 N 1.31618 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46909 * 89.99619 * 18 16 14 20 20 H 1.48494 * 109.47086 * 209.99739 * 18 16 14 21 21 H 1.48502 * 109.46727 * 329.99791 * 18 16 14 22 22 C 1.47422 * 125.64326 * 175.02784 * 8 6 3 23 23 H 1.08993 * 109.46872 * 60.00248 * 1 2 3 24 24 H 1.09000 * 109.46642 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47098 * 299.99540 * 1 2 3 26 26 H 1.09002 * 109.46820 * 65.35577 * 5 3 2 27 27 H 1.08997 * 109.47591 * 185.36294 * 5 3 2 28 28 H 1.09007 * 109.46730 * 305.36168 * 5 3 2 29 29 H 1.08994 * 109.88146 * 300.51767 * 9 8 6 30 30 H 1.08998 * 109.87918 * 61.52501 * 9 8 6 31 31 H 1.09000 * 110.71901 * 263.82747 * 10 9 8 32 32 H 1.09000 * 110.71732 * 140.55828 * 10 9 8 33 33 H 0.96994 * 119.99957 * 86.92601 * 13 11 10 34 34 H 0.96999 * 120.00041 * 180.02562 * 17 16 14 35 35 H 1.08998 * 110.37187 * 36.99497 * 22 8 6 36 36 H 1.08999 * 110.36685 * 274.66735 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2641 -0.7104 7 8 3.8258 0.1985 -1.0235 8 7 3.9852 2.4112 -0.9978 9 6 3.4654 3.7677 -0.7714 10 6 4.5355 4.7585 -1.2760 11 6 5.3571 3.9030 -2.2762 12 1 4.8717 3.8679 -3.2516 13 7 6.7286 4.4046 -2.3932 14 6 7.0458 5.3093 -3.3710 15 1 6.2848 5.6534 -4.0558 16 6 8.3454 5.7841 -3.4821 17 7 9.2727 5.3651 -2.6473 18 14 8.7779 7.0187 -4.8156 19 1 8.5833 8.3963 -4.2965 20 1 10.1959 6.8369 -5.2174 21 1 7.8984 6.8043 -5.9927 22 6 5.3304 2.5134 -1.5922 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.9560 1.1332 1.9279 27 1 2.5715 2.8024 1.4440 28 1 1.2732 1.7107 1.9833 29 1 2.5389 3.9074 -1.3281 30 1 3.2854 3.9229 0.2924 31 1 5.1639 5.0995 -0.4532 32 1 4.0700 5.6037 -1.7830 33 1 7.4111 4.0988 -1.7755 34 1 10.1808 5.6972 -2.7248 35 1 5.4804 1.7247 -2.3294 36 1 6.0934 2.4582 -0.8157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967417719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:29 Heat of formation + Delta-G solvation = -85.351443 kcal Electronic energy + Delta-G solvation = -17708.095797 eV Core-core repulsion = 14806.028850 eV Total energy + Delta-G solvation = -2902.066947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.32394 -39.22643 -38.17047 -35.97906 -33.64859 -32.38340 -30.97568 -29.22408 -27.69948 -26.08411 -24.95385 -23.49373 -21.66738 -20.48109 -19.32978 -18.50795 -17.72017 -17.32489 -16.60036 -16.33389 -16.07705 -15.72801 -15.16845 -14.78603 -14.69341 -14.35247 -13.88638 -13.76286 -13.38220 -13.23590 -13.06783 -12.95813 -12.75503 -12.62757 -12.34804 -12.16305 -12.07761 -11.75706 -11.57950 -11.06129 -10.94219 -10.55388 -9.71883 -9.05345 -7.95231 -5.25655 1.48227 1.49742 1.51449 1.59533 1.66530 2.56804 2.93083 3.34488 3.45296 3.70005 3.87653 3.92126 3.97314 4.07617 4.24519 4.31568 4.47289 4.50566 4.56450 4.57472 4.75117 4.79353 4.84303 4.87013 4.98721 5.16537 5.21459 5.27409 5.42435 5.53714 6.08127 6.25455 6.48252 7.05516 7.32284 8.03465 8.27538 9.28128 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.057909 B = 0.004418 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.399390 B = 6335.954378 C = 6432.325560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.399 6.399 3 C 0.080 3.920 4 H 0.117 0.883 5 C -0.166 4.166 6 C 0.518 3.482 7 O -0.582 6.582 8 N -0.609 5.609 9 C 0.100 3.900 10 C -0.144 4.144 11 C 0.165 3.835 12 H 0.064 0.936 13 N -0.729 5.729 14 C -0.242 4.242 15 H 0.082 0.918 16 C -0.073 4.073 17 N -0.970 5.970 18 Si 0.974 3.026 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.269 1.269 22 C 0.105 3.895 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.374 0.626 34 H 0.251 0.749 35 H 0.055 0.945 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.316 -2.652 7.537 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.318 6.318 3 C 0.020 3.980 4 H 0.135 0.865 5 C -0.223 4.223 6 C 0.307 3.693 7 O -0.462 6.462 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.185 4.185 11 C 0.055 3.945 12 H 0.082 0.918 13 N -0.368 5.368 14 C -0.374 4.374 15 H 0.100 0.900 16 C -0.265 4.265 17 N -0.620 5.620 18 Si 0.803 3.197 19 H -0.211 1.211 20 H -0.226 1.226 21 H -0.193 1.193 22 C -0.019 4.019 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.206 0.794 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.024 -3.347 7.227 21.550 hybrid contribution 1.058 0.474 -0.525 1.273 sum -18.966 -2.873 6.702 20.319 Atomic orbital electron populations 1.23119 0.78381 1.04257 1.01660 1.88012 1.22196 1.26402 1.95205 1.21968 0.91259 0.86967 0.97840 0.86509 1.22258 1.04321 1.02609 0.93133 1.20956 0.87472 0.82086 0.78771 1.90681 1.69512 1.31051 1.54945 1.48430 1.17572 1.06837 1.61544 1.22432 0.97889 0.79014 1.02803 1.23220 0.97132 0.98316 0.99793 1.21454 0.86064 0.90256 0.96709 0.91762 1.42415 1.05984 1.51103 1.37309 1.19634 0.94154 1.15971 1.07632 0.90025 1.25576 0.96131 1.03079 1.01755 1.69822 1.02183 1.48996 1.40992 0.85131 0.76665 0.78815 0.79071 1.21124 1.22638 1.19343 1.22302 0.84082 0.98641 0.96886 0.92732 0.88599 0.91506 0.93257 0.88938 0.88497 0.88526 0.88466 0.91583 0.89286 0.79372 0.93990 0.92642 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.40 -10.03 9.90 -130.11 -1.29 -11.32 16 3 C 0.08 1.73 2.53 29.85 0.08 1.81 16 4 H 0.12 1.70 7.60 -2.39 -0.02 1.68 16 5 C -0.17 -2.67 9.40 71.98 0.68 -2.00 16 6 C 0.52 16.47 7.17 87.66 0.63 17.10 16 7 O -0.58 -24.85 16.76 15.85 0.27 -24.59 16 8 N -0.61 -17.95 3.33 -811.81 -2.70 -20.65 16 9 C 0.10 2.11 6.17 86.73 0.54 2.65 16 10 C -0.14 -4.12 6.65 31.78 0.21 -3.91 16 11 C 0.17 6.21 3.71 46.38 0.17 6.38 16 12 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 13 N -0.73 -35.55 5.24 -316.37 -1.66 -37.21 16 14 C -0.24 -12.94 9.96 84.03 0.84 -12.11 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 17 N -0.97 -58.51 13.06 21.65 0.28 -58.23 16 18 Si 0.97 44.96 29.55 68.60 2.03 46.99 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.11 3.82 6.58 86.86 0.57 4.40 16 23 H 0.05 0.64 8.08 -2.39 -0.02 0.62 16 24 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 0.62 7.78 -2.39 -0.02 0.60 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.18 5.70 -2.39 -0.01 1.16 16 28 H 0.10 1.05 7.78 -2.38 -0.02 1.03 16 29 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 30 H 0.10 1.52 5.92 -2.39 -0.01 1.50 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.37 19.87 7.76 -92.71 -0.72 19.15 16 34 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.05 2.23 7.99 -2.39 -0.02 2.21 16 36 H 0.06 2.23 8.00 -2.39 -0.02 2.21 16 Total: -1.00 -73.26 299.18 2.68 -70.58 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.35 Total: 22.20 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.40 Total: 12.24 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.08 Total: -116.09 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.02 Total: -35.91 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -73.26 2.68 -70.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967417719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.775 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds