Wall clock time and date at job start Mon Mar 30 2020 18:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00557 * 2 1 4 4 C 1.50696 * 109.47299 * 180.02562 * 3 2 1 5 5 O 1.21272 * 120.00395 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99494 * 180.02562 * 4 3 2 7 7 C 1.47017 * 125.65425 * 0.02562 * 6 4 3 8 8 C 1.54327 * 107.27426 * 178.89978 * 7 6 4 9 9 C 1.55154 * 102.93986 * 337.80177 * 8 7 6 10 10 H 1.08999 * 111.01209 * 277.43185 * 9 8 7 11 11 N 1.46503 * 111.00123 * 153.61342 * 9 8 7 12 12 C 1.46492 * 120.00137 * 303.18430 * 11 9 8 13 13 C 1.36937 * 119.99545 * 123.18577 * 11 9 8 14 14 H 1.07996 * 120.00542 * 23.39807 * 13 11 9 15 15 C 1.38817 * 119.99873 * 203.39775 * 13 11 9 16 16 N 1.31620 * 119.99649 * 14.27494 * 15 13 11 17 17 Si 1.86796 * 120.00238 * 194.27244 * 15 13 11 18 18 H 1.48501 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47155 * 120.00090 * 17 15 13 20 20 H 1.48496 * 109.47225 * 240.00116 * 17 15 13 21 21 C 1.47428 * 125.64610 * 179.97438 * 6 4 3 22 22 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46775 * 299.99606 * 1 2 3 24 24 H 1.08992 * 109.47215 * 59.99605 * 1 2 3 25 25 H 1.09000 * 109.46873 * 60.00003 * 3 2 1 26 26 H 1.08999 * 109.47087 * 300.00472 * 3 2 1 27 27 H 1.09004 * 109.88028 * 59.47786 * 7 6 4 28 28 H 1.09008 * 110.00984 * 298.38785 * 7 6 4 29 29 H 1.09001 * 110.71604 * 219.44291 * 8 7 6 30 30 H 1.08998 * 110.87424 * 96.24244 * 8 7 6 31 31 H 1.09003 * 109.47502 * 95.17664 * 12 11 9 32 32 H 1.09007 * 109.47373 * 215.17624 * 12 11 9 33 33 H 1.08998 * 109.47737 * 335.17816 * 12 11 9 34 34 H 0.96999 * 119.99991 * 180.02562 * 16 15 13 35 35 H 1.09005 * 110.36339 * 85.33222 * 21 6 4 36 36 H 1.09000 * 110.36729 * 323.01585 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 8 4.0342 0.0914 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 3.7781 3.6797 0.0014 8 6 5.0089 4.6104 0.0296 9 6 6.1204 3.6989 0.6135 10 1 6.0682 3.6672 1.7018 11 7 7.4457 4.1348 0.1665 12 6 7.7401 4.2333 -1.2652 13 6 8.4092 4.4503 1.0870 14 1 8.3572 4.0410 2.0851 15 6 9.4528 5.2961 0.7373 16 7 9.3778 6.0134 -0.3637 17 14 10.9636 5.4164 1.8292 18 1 10.8021 4.5156 2.9987 19 1 12.1662 5.0142 1.0563 20 1 11.1234 6.8153 2.3008 21 6 5.7505 2.3254 -0.0002 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6888 1.8463 0.8900 26 1 1.6887 1.8463 -0.8899 27 1 3.1633 3.8512 0.8850 28 1 3.1928 3.8664 -0.8991 29 1 4.8303 5.4662 0.6806 30 1 5.2693 4.9404 -0.9761 31 1 7.5798 5.2584 -1.5995 32 1 8.7779 3.9513 -1.4430 33 1 7.0818 3.5636 -1.8185 34 1 10.1071 6.6042 -0.6084 35 1 6.1314 2.2501 -1.0188 36 1 6.1457 1.5165 0.6142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970916473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:48 Heat of formation + Delta-G solvation = -45.662939 kcal Electronic energy + Delta-G solvation = -17800.375358 eV Core-core repulsion = 14900.029434 eV Total energy + Delta-G solvation = -2900.345925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86781 -38.02978 -36.94695 -34.82345 -31.75993 -29.97447 -29.21673 -27.60238 -26.11666 -25.83745 -23.36822 -22.30422 -19.39704 -19.20230 -17.26761 -17.10830 -16.46478 -16.32149 -15.64091 -15.22529 -14.56872 -14.13817 -13.70452 -13.42007 -13.32097 -12.77192 -12.53004 -12.46811 -12.19841 -11.88556 -11.62816 -11.36222 -10.99243 -10.80941 -10.53322 -10.49091 -10.25043 -9.98018 -9.91950 -9.87327 -9.58679 -8.62103 -8.37495 -6.82978 -5.79049 -3.26630 2.75457 2.81476 3.35540 3.43525 3.45628 3.91341 4.44850 4.59885 4.93134 4.97575 4.99405 5.11007 5.14448 5.26056 5.34403 5.42653 5.48502 5.55820 5.73233 5.87493 5.98860 6.26909 6.35733 6.47827 6.59683 6.75604 6.83166 6.87381 7.30102 7.66004 7.72836 7.76395 8.31208 8.35457 9.15978 9.78387 10.27028 11.25442 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.056045 B = 0.004672 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.479388 B = 5992.288428 C = 6143.111095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.049 3.951 4 C 0.525 3.475 5 O -0.527 6.527 6 N -0.613 5.613 7 C 0.099 3.901 8 C -0.151 4.151 9 C 0.173 3.827 10 H 0.079 0.921 11 N -0.585 5.585 12 C 0.157 3.843 13 C -0.261 4.261 14 H 0.070 0.930 15 C 0.006 3.994 16 N -0.904 5.904 17 Si 0.906 3.094 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.087 3.913 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.003 0.997 34 H 0.253 0.747 35 H 0.070 0.930 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.904 -3.824 -0.272 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.031 4.031 4 C 0.312 3.688 5 O -0.403 6.403 6 N -0.349 5.349 7 C -0.024 4.024 8 C -0.192 4.192 9 C 0.062 3.938 10 H 0.097 0.903 11 N -0.305 5.305 12 C 0.013 3.987 13 C -0.390 4.390 14 H 0.088 0.912 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.735 3.265 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.217 1.217 21 C -0.037 4.037 22 H 0.108 0.892 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.394 -4.534 -0.353 16.051 hybrid contribution 0.519 0.584 0.422 0.889 sum -14.874 -3.950 0.069 15.390 Atomic orbital electron populations 1.22821 0.80630 1.03154 1.00039 1.88016 1.19565 1.25544 1.95403 1.22220 0.91961 0.86543 1.02399 1.19799 0.88098 0.83536 0.77398 1.90717 1.74530 1.25910 1.49159 1.48416 1.08258 1.05530 1.72721 1.22112 0.98091 0.81496 1.00695 1.23234 0.94479 0.98252 1.03200 1.21419 0.85564 0.89504 0.97278 0.90301 1.43814 1.07020 1.76818 1.02849 1.20828 0.97599 0.97777 0.82499 1.19263 1.02223 1.22926 0.94638 0.91179 1.25024 1.00063 0.96440 0.97807 1.70078 1.31924 1.27360 1.25424 0.86171 0.83031 0.77359 0.79893 1.20213 1.21531 1.21703 1.23005 0.77360 1.01264 1.02101 0.89203 0.93873 0.93901 0.90368 0.90436 0.91824 0.92021 0.90431 0.90451 0.94751 0.94008 0.97824 0.93705 0.91181 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.99 10.24 -55.14 -0.56 -5.56 16 3 C 0.05 0.58 5.61 36.00 0.20 0.79 16 4 C 0.52 8.70 7.93 -10.99 -0.09 8.61 16 5 O -0.53 -11.12 16.75 -14.34 -0.24 -11.36 16 6 N -0.61 -9.76 3.33 -170.52 -0.57 -10.32 16 7 C 0.10 1.28 6.49 -3.06 -0.02 1.26 16 8 C -0.15 -2.44 6.53 -24.90 -0.16 -2.60 16 9 C 0.17 3.38 3.54 -65.78 -0.23 3.15 16 10 H 0.08 1.56 7.95 -51.93 -0.41 1.14 16 11 N -0.58 -14.08 2.96 -171.03 -0.51 -14.59 16 12 C 0.16 3.72 7.74 59.84 0.46 4.19 16 13 C -0.26 -6.98 9.60 -15.06 -0.14 -7.12 16 14 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 15 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 16 N -0.90 -25.62 10.81 55.49 0.60 -25.02 16 17 Si 0.91 21.46 29.58 -169.99 -5.03 16.43 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.09 1.61 6.45 -2.53 -0.02 1.59 16 22 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.33 7.21 -51.93 -0.37 0.96 16 31 H 0.03 0.87 7.32 -51.93 -0.38 0.49 16 32 H 0.04 1.07 7.40 -51.92 -0.38 0.69 16 33 H 0.00 0.07 6.16 -51.93 -0.32 -0.25 16 34 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.07 1.36 6.14 -51.93 -0.32 1.04 16 36 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -32.31 296.47 -6.35 -38.66 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -5.54 Total: -4.00 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 1.03 Total: 11.29 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.47 Total: -49.92 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.80 Total: -16.92 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.31 -6.35 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970916473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.005 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds