Wall clock time and date at job start Mon Mar 30 2020 18:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00455 * 2 1 4 4 C 1.50693 * 109.47515 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99666 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99950 * 180.02562 * 4 3 2 7 7 C 1.47425 * 125.65189 * 359.96495 * 6 4 3 8 8 C 1.54906 * 104.83815 * 204.15389 * 7 6 4 9 9 C 1.55157 * 101.57850 * 322.99441 * 8 7 6 10 10 H 1.09003 * 110.72490 * 277.13366 * 9 8 7 11 11 N 1.46505 * 110.71973 * 153.86334 * 9 8 7 12 12 C 1.36933 * 119.99900 * 91.47408 * 11 9 8 13 13 H 1.08001 * 120.00575 * 0.02562 * 12 11 9 14 14 C 1.38820 * 120.00046 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99517 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00093 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47444 * 60.00070 * 16 14 12 18 18 H 1.48503 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47187 * 299.99980 * 16 14 12 20 20 C 1.47027 * 125.64733 * 180.02562 * 6 4 3 21 21 H 1.09002 * 109.88429 * 59.49757 * 20 6 4 22 22 C 1.53005 * 110.00938 * 298.40164 * 20 6 4 23 23 H 1.08995 * 109.46799 * 60.00072 * 1 2 3 24 24 H 1.08996 * 109.47253 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47016 * 300.00263 * 1 2 3 26 26 H 1.09001 * 109.46849 * 59.99398 * 3 2 1 27 27 H 1.08998 * 109.46708 * 300.00205 * 3 2 1 28 28 H 1.09009 * 110.35863 * 85.31658 * 7 6 4 29 29 H 1.09001 * 110.45922 * 323.04922 * 7 6 4 30 30 H 1.08994 * 111.00476 * 204.92106 * 8 7 6 31 31 H 1.09001 * 110.99920 * 81.06228 * 8 7 6 32 32 H 0.97000 * 120.00109 * 271.47584 * 11 9 8 33 33 H 0.97002 * 119.99392 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.47215 * 301.80506 * 22 20 6 35 35 H 1.09001 * 109.46642 * 61.80009 * 22 20 6 36 36 H 1.09002 * 109.46991 * 181.80028 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2765 2.2967 0.0013 7 6 3.7766 3.6836 0.0007 8 6 4.9281 4.5200 -0.6110 9 6 6.1757 3.8075 -0.0254 10 1 6.3875 4.1663 0.9819 11 7 7.3371 3.9947 -0.8986 12 6 8.1828 5.0524 -0.6958 13 1 7.9939 5.7485 0.1080 14 6 9.2829 5.2301 -1.5236 15 7 9.5134 4.3815 -2.5030 16 14 10.4369 6.6726 -1.2465 17 1 11.0231 6.5833 0.1150 18 1 11.5242 6.6379 -2.2574 19 1 9.6805 7.9438 -1.3774 20 6 5.7465 2.3254 0.0014 21 1 6.1274 1.8129 -0.8820 22 6 6.2832 1.6513 1.2657 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.5686 4.0122 1.0190 29 1 2.8802 3.7653 -0.6141 30 1 4.8778 5.5566 -0.2778 31 1 4.9189 4.4602 -1.6994 32 1 7.5070 3.3693 -1.6204 33 1 10.2824 4.5055 -3.0811 34 1 5.8885 2.1609 2.1447 35 1 5.9715 0.6069 1.2808 36 1 7.3718 1.7057 1.2723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985831495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:05:00 Heat of formation + Delta-G solvation = -85.465896 kcal Electronic energy + Delta-G solvation = -17809.636927 eV Core-core repulsion = 14907.565016 eV Total energy + Delta-G solvation = -2902.071911 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28635 -39.20944 -38.06942 -35.91440 -33.48564 -32.33524 -31.14062 -29.29274 -26.85036 -26.73904 -24.78956 -23.67558 -21.67008 -20.22758 -19.14971 -18.30661 -17.59616 -17.28825 -16.92437 -16.36525 -16.06259 -15.48553 -15.32611 -14.89991 -14.64081 -14.42603 -13.79083 -13.60675 -13.38337 -13.15437 -13.04364 -12.88321 -12.63636 -12.52242 -12.31835 -12.20097 -12.09679 -11.71293 -11.54162 -10.92523 -10.77441 -10.74095 -9.69423 -9.02261 -7.93097 -5.23320 1.50208 1.53184 1.55604 1.58998 1.68726 2.58188 3.01348 3.38051 3.53413 3.76146 3.81635 4.03146 4.14882 4.20622 4.26273 4.38092 4.43415 4.51970 4.53842 4.60175 4.66354 4.74410 4.88722 4.93361 5.04937 5.21354 5.25669 5.32153 5.46687 5.55570 6.08564 6.26985 6.54843 7.13181 7.33295 8.05467 8.29191 9.30322 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.053370 B = 0.004739 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.516894 B = 5906.845602 C = 6075.889606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.056 3.944 4 C 0.516 3.484 5 O -0.579 6.579 6 N -0.608 5.608 7 C 0.102 3.898 8 C -0.149 4.149 9 C 0.170 3.830 10 H 0.075 0.925 11 N -0.730 5.730 12 C -0.239 4.239 13 H 0.085 0.915 14 C -0.076 4.076 15 N -0.972 5.972 16 Si 0.974 3.026 17 H -0.278 1.278 18 H -0.301 1.301 19 H -0.274 1.274 20 C 0.131 3.869 21 H 0.041 0.959 22 C -0.144 4.144 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.370 0.630 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.458 -0.358 7.366 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.023 4.023 4 C 0.306 3.694 5 O -0.458 6.458 6 N -0.343 5.343 7 C -0.019 4.019 8 C -0.189 4.189 9 C 0.061 3.939 10 H 0.093 0.907 11 N -0.368 5.368 12 C -0.370 4.370 13 H 0.103 0.897 14 C -0.268 4.268 15 N -0.623 5.623 16 Si 0.803 3.197 17 H -0.204 1.204 18 H -0.228 1.228 19 H -0.200 1.200 20 C 0.026 3.974 21 H 0.059 0.941 22 C -0.202 4.202 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.052 -1.016 7.451 20.482 hybrid contribution 1.080 0.382 -0.609 1.298 sum -17.971 -0.634 6.842 19.240 Atomic orbital electron populations 1.23045 0.78101 1.04182 1.01759 1.87966 1.22330 1.26708 1.95799 1.22298 0.88070 0.86704 1.05250 1.20777 0.90143 0.82642 0.75864 1.90685 1.75780 1.28015 1.51339 1.48561 1.06286 1.07142 1.72328 1.22634 0.97793 0.78521 1.02986 1.23394 0.94941 1.00240 1.00366 1.21452 0.87245 0.90596 0.94645 0.90725 1.42527 1.27534 1.31146 1.35642 1.19618 1.03198 1.02961 1.11267 0.89735 1.25591 1.00955 1.01801 0.98423 1.69837 1.30926 1.39892 1.21616 0.85199 0.78243 0.79359 0.76862 1.20377 1.22775 1.19986 1.21674 0.80074 0.97794 0.97831 0.94082 1.21927 1.00906 1.00318 0.97064 0.92253 0.88752 0.91926 0.86906 0.87588 0.88281 0.87663 0.88927 0.92604 0.79802 0.94128 0.90972 0.93354 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -10.15 10.24 -129.94 -1.33 -11.48 16 3 C 0.06 1.13 5.42 71.23 0.39 1.51 16 4 C 0.52 16.03 7.72 87.66 0.68 16.71 16 5 O -0.58 -24.16 15.55 15.99 0.25 -23.91 16 6 N -0.61 -17.69 3.07 -788.04 -2.42 -20.11 16 7 C 0.10 2.10 6.69 86.85 0.58 2.68 16 8 C -0.15 -4.31 6.77 31.99 0.22 -4.10 16 9 C 0.17 6.29 3.14 46.18 0.14 6.43 16 10 H 0.07 2.67 7.80 -2.39 -0.02 2.65 16 11 N -0.73 -35.68 5.22 -317.31 -1.66 -37.34 16 12 C -0.24 -12.67 9.96 84.04 0.84 -11.84 16 13 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 15 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 16 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.13 4.72 3.20 45.34 0.15 4.86 16 21 H 0.04 1.77 7.72 -2.39 -0.02 1.75 16 22 C -0.14 -4.97 9.11 71.98 0.66 -4.32 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.11 1.54 7.85 -2.39 -0.02 1.52 16 28 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.11 1.47 7.48 -2.39 -0.02 1.46 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.37 20.20 7.56 -92.71 -0.70 19.50 16 33 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.79 6.90 -2.39 -0.02 1.77 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -73.80 301.26 2.87 -70.93 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.36 Total: 24.16 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.36 Total: 9.77 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.79 Total: -116.48 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.08 Total: -35.39 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.80 2.87 -70.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985831495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.537 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds