Wall clock time and date at job start Mon Mar 30 2020 18:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99945 * 2 1 4 4 C 1.50698 * 109.46933 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00423 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63144 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 233.55709 * 7 6 4 9 9 C 1.53070 * 109.29524 * 305.57804 * 8 7 6 10 10 N 1.46498 * 109.44278 * 181.23594 * 9 8 7 11 11 C 1.36936 * 119.99742 * 84.79956 * 10 9 8 12 12 H 1.07997 * 120.00304 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99612 * 180.02562 * 11 10 9 14 14 N 1.31611 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47403 * 119.99672 * 15 13 11 18 18 H 1.48496 * 109.47297 * 240.00177 * 15 13 11 19 19 C 1.53039 * 109.65812 * 61.15209 * 9 8 7 20 20 C 1.46928 * 120.62874 * 0.02562 * 6 4 3 21 21 H 1.08996 * 109.47061 * 59.99840 * 1 2 3 22 22 H 1.09005 * 109.47042 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46838 * 299.99440 * 1 2 3 24 24 H 1.09001 * 109.47044 * 59.99949 * 3 2 1 25 25 H 1.08997 * 109.47212 * 300.00458 * 3 2 1 26 26 H 1.09002 * 109.58751 * 353.41659 * 7 6 4 27 27 H 1.08996 * 109.58750 * 113.69843 * 7 6 4 28 28 H 1.08997 * 109.50046 * 65.38734 * 8 7 6 29 29 H 1.09003 * 109.49733 * 185.48713 * 8 7 6 30 30 H 1.09007 * 109.35101 * 301.12962 * 9 8 7 31 31 H 0.97004 * 120.00020 * 264.79513 * 10 9 8 32 32 H 0.97000 * 120.00375 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.49876 * 178.74890 * 19 9 8 34 34 H 1.09005 * 109.52615 * 58.67140 * 19 9 8 35 35 H 1.08998 * 109.58787 * 246.16207 * 20 6 4 36 36 H 1.09007 * 109.58600 * 6.44520 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7423 2.1969 -0.0003 8 6 6.2957 3.0218 1.1660 9 6 5.7603 4.4527 1.0725 10 7 6.3110 5.2522 2.1697 11 6 7.5411 5.8393 2.0386 12 1 8.1055 5.7126 1.1266 13 6 8.0632 6.5963 3.0785 14 7 7.3756 6.7503 4.1901 15 14 9.7416 7.3967 2.9000 16 1 10.3049 7.0728 1.5646 17 1 9.6049 8.8691 3.0362 18 1 10.6495 6.8838 3.9572 19 6 4.2330 4.4382 1.1689 20 6 3.6592 3.6301 0.0014 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 6.0375 1.1543 0.1171 27 1 6.1349 2.5842 -0.9404 28 1 5.9778 2.5774 2.1091 29 1 7.3846 3.0346 1.1181 30 1 6.0598 4.8889 0.1195 31 1 5.8042 5.3656 2.9890 32 1 7.7402 7.2796 4.9166 33 1 3.8559 5.4600 1.1243 34 1 3.9317 3.9801 2.1109 35 1 3.8816 4.1369 -0.9376 36 1 2.5797 3.5329 0.1174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989827991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:06:14 Heat of formation + Delta-G solvation = -67.432737 kcal Electronic energy + Delta-G solvation = -17704.887325 eV Core-core repulsion = 14803.597391 eV Total energy + Delta-G solvation = -2901.289934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12153 -37.99719 -36.99474 -34.52008 -32.12190 -31.12316 -29.60401 -28.50295 -26.12301 -24.76338 -22.82420 -22.65872 -20.39525 -18.95179 -17.50509 -17.10489 -16.52335 -16.38012 -15.58463 -14.86661 -14.74573 -14.45329 -13.86864 -13.62864 -13.53486 -13.22413 -12.88413 -12.55392 -12.27848 -12.06635 -11.63883 -11.51665 -10.95360 -10.93049 -10.83423 -10.45361 -10.24590 -10.01459 -9.94137 -9.73442 -9.57601 -8.93675 -8.52725 -7.00680 -5.80547 -3.09762 2.63276 2.75520 3.40979 3.46907 3.48955 3.79383 4.49585 4.55607 4.81946 4.92604 4.98770 5.08305 5.12934 5.19487 5.33103 5.40807 5.42412 5.54781 5.58940 5.75283 5.86936 5.94894 6.18677 6.24151 6.41258 6.51943 6.53797 6.78387 6.91264 7.02310 7.46239 7.66964 8.22947 8.37732 9.49198 10.06034 10.40618 11.42109 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.054465 B = 0.004495 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.967368 B = 6228.264165 C = 6461.088122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.514 3.486 5 O -0.528 6.528 6 N -0.606 5.606 7 C 0.114 3.886 8 C -0.150 4.150 9 C 0.179 3.821 10 N -0.725 5.725 11 C -0.240 4.240 12 H 0.071 0.929 13 C -0.013 4.013 14 N -0.932 5.932 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.141 4.141 20 C 0.110 3.890 21 H 0.042 0.958 22 H 0.090 0.910 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.176 -7.386 -9.491 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.301 3.699 5 O -0.404 6.404 6 N -0.341 5.341 7 C -0.008 4.008 8 C -0.191 4.191 9 C 0.068 3.932 10 N -0.365 5.365 11 C -0.371 4.371 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.581 5.581 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.180 4.180 20 C -0.014 4.014 21 H 0.061 0.939 22 H 0.108 0.892 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.612 -8.063 -9.542 17.752 hybrid contribution 0.538 0.892 0.359 1.102 sum -12.075 -7.171 -9.183 16.780 Atomic orbital electron populations 1.22829 0.80557 1.03196 1.00105 1.88016 1.19635 1.25493 1.95405 1.22310 0.92148 0.86680 1.02458 1.20162 0.88523 0.84324 0.76901 1.90699 1.74479 1.26261 1.48954 1.48118 1.07381 1.05617 1.73006 1.21708 0.77771 1.02000 0.99365 1.22678 1.01487 0.98009 0.96937 1.20170 0.89940 0.89995 0.93061 1.42436 1.20019 1.58585 1.15459 1.19284 0.94123 1.23813 0.99868 0.91074 1.24749 0.98731 1.01096 0.96338 1.69665 1.38105 1.44718 1.05585 0.86132 0.83956 0.78937 0.77251 1.20522 1.21875 1.21867 1.22206 0.98092 1.00040 0.97634 1.21800 0.97084 0.82599 0.99888 0.93890 0.89190 0.93773 0.90136 0.90359 0.89619 0.91686 0.92247 0.90585 0.93358 0.78288 0.93536 0.90334 0.91686 0.90943 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.75 10.24 -55.14 -0.56 -5.32 16 3 C 0.04 0.49 4.76 36.00 0.17 0.66 16 4 C 0.51 7.74 7.78 -10.98 -0.09 7.66 16 5 O -0.53 -10.20 15.91 -14.35 -0.23 -10.43 16 6 N -0.61 -8.45 2.98 -172.80 -0.51 -8.96 16 7 C 0.11 1.72 6.43 -3.71 -0.02 1.70 16 8 C -0.15 -2.65 5.67 -26.59 -0.15 -2.80 16 9 C 0.18 3.32 2.73 -67.88 -0.19 3.14 16 10 N -0.72 -17.52 5.12 -53.37 -0.27 -17.79 16 11 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 12 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 14 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 15 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 19 C -0.14 -2.06 5.55 -26.64 -0.15 -2.21 16 20 C 0.11 1.25 6.34 -3.74 -0.02 1.23 16 21 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 25 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 26 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 32 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.65 5.93 -51.92 -0.31 0.35 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -33.33 297.73 -6.54 -39.87 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.57 Total: 4.50 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 0.42 Total: 3.63 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.06 Total: -53.80 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.79 Total: -15.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.33 -6.54 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989827991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.559 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds