Wall clock time and date at job start Mon Mar 30 2020 18:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99945 * 2 1 4 4 C 1.50698 * 109.46933 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00423 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99922 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63144 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 233.55709 * 7 6 4 9 9 C 1.53070 * 109.29524 * 305.57804 * 8 7 6 10 10 N 1.46498 * 109.44278 * 181.23594 * 9 8 7 11 11 C 1.36936 * 119.99742 * 84.79956 * 10 9 8 12 12 H 1.07997 * 120.00304 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99612 * 180.02562 * 11 10 9 14 14 N 1.31611 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47403 * 119.99672 * 15 13 11 18 18 H 1.48496 * 109.47297 * 240.00177 * 15 13 11 19 19 C 1.53039 * 109.65812 * 61.15209 * 9 8 7 20 20 C 1.46928 * 120.62874 * 0.02562 * 6 4 3 21 21 H 1.08996 * 109.47061 * 59.99840 * 1 2 3 22 22 H 1.09005 * 109.47042 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46838 * 299.99440 * 1 2 3 24 24 H 1.09001 * 109.47044 * 59.99949 * 3 2 1 25 25 H 1.08997 * 109.47212 * 300.00458 * 3 2 1 26 26 H 1.09002 * 109.58751 * 353.41659 * 7 6 4 27 27 H 1.08996 * 109.58750 * 113.69843 * 7 6 4 28 28 H 1.08997 * 109.50046 * 65.38734 * 8 7 6 29 29 H 1.09003 * 109.49733 * 185.48713 * 8 7 6 30 30 H 1.09007 * 109.35101 * 301.12962 * 9 8 7 31 31 H 0.97004 * 120.00020 * 264.79513 * 10 9 8 32 32 H 0.97000 * 120.00375 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.49876 * 178.74890 * 19 9 8 34 34 H 1.09005 * 109.52615 * 58.67140 * 19 9 8 35 35 H 1.08998 * 109.58787 * 246.16207 * 20 6 4 36 36 H 1.09007 * 109.58600 * 6.44520 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7423 2.1969 -0.0003 8 6 6.2957 3.0218 1.1660 9 6 5.7603 4.4527 1.0725 10 7 6.3110 5.2522 2.1697 11 6 7.5411 5.8393 2.0386 12 1 8.1055 5.7126 1.1266 13 6 8.0632 6.5963 3.0785 14 7 7.3756 6.7503 4.1901 15 14 9.7416 7.3967 2.9000 16 1 10.3049 7.0728 1.5646 17 1 9.6049 8.8691 3.0362 18 1 10.6495 6.8838 3.9572 19 6 4.2330 4.4382 1.1689 20 6 3.6592 3.6301 0.0014 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 6.0375 1.1543 0.1171 27 1 6.1349 2.5842 -0.9404 28 1 5.9778 2.5774 2.1091 29 1 7.3846 3.0346 1.1181 30 1 6.0598 4.8889 0.1195 31 1 5.8042 5.3656 2.9890 32 1 7.7402 7.2796 4.9166 33 1 3.8559 5.4600 1.1243 34 1 3.9317 3.9801 2.1109 35 1 3.8816 4.1369 -0.9376 36 1 2.5797 3.5329 0.1174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989827991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:06:13 Heat of formation + Delta-G solvation = -91.091280 kcal Electronic energy + Delta-G solvation = -17705.913237 eV Core-core repulsion = 14803.597391 eV Total energy + Delta-G solvation = -2902.315846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26320 -39.06362 -38.13379 -36.16151 -33.87288 -32.34718 -31.18251 -29.52743 -26.97711 -26.31975 -24.25559 -24.04741 -21.73910 -20.20231 -19.08653 -18.48545 -17.47671 -17.26052 -16.80716 -16.49385 -15.79938 -15.53092 -15.39253 -15.36783 -14.87054 -14.48709 -13.97901 -13.83270 -13.38429 -13.12649 -13.09900 -12.87121 -12.63363 -12.31999 -12.17659 -12.11177 -11.93754 -11.69005 -11.41094 -10.91137 -10.76070 -10.73865 -9.71213 -9.00616 -7.93906 -5.22086 1.47868 1.48829 1.52434 1.58244 1.76047 2.56662 2.97735 3.39610 3.55968 3.82931 3.86803 4.14272 4.16238 4.17996 4.26763 4.37852 4.42096 4.54072 4.60699 4.62985 4.77840 4.83400 4.87489 4.89710 4.98006 5.11949 5.31624 5.49236 5.54424 5.58923 6.07464 6.28701 6.40328 7.11665 7.34910 8.11208 8.33389 9.29809 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.054465 B = 0.004495 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.967368 B = 6228.264165 C = 6461.088122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.047 3.953 4 C 0.506 3.494 5 O -0.582 6.582 6 N -0.605 5.605 7 C 0.122 3.878 8 C -0.138 4.138 9 C 0.171 3.829 10 N -0.738 5.738 11 C -0.236 4.236 12 H 0.077 0.923 13 C -0.077 4.077 14 N -0.970 5.970 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.293 1.293 18 H -0.298 1.298 19 C -0.132 4.132 20 C 0.114 3.886 21 H 0.063 0.937 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.372 0.628 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 -6.917 -11.270 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C -0.032 4.032 4 C 0.295 3.705 5 O -0.461 6.461 6 N -0.339 5.339 7 C -0.001 4.001 8 C -0.179 4.179 9 C 0.063 3.937 10 N -0.377 5.377 11 C -0.367 4.367 12 H 0.095 0.905 13 C -0.269 4.269 14 N -0.621 5.621 15 Si 0.798 3.202 16 H -0.189 1.189 17 H -0.220 1.220 18 H -0.225 1.225 19 C -0.171 4.171 20 C -0.008 4.008 21 H 0.081 0.919 22 H 0.112 0.888 23 H 0.076 0.924 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.203 0.797 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.185 -7.592 -11.374 19.703 hybrid contribution 0.976 0.694 0.880 1.486 sum -13.209 -6.898 -10.495 18.226 Atomic orbital electron populations 1.23045 0.78197 1.04173 1.01738 1.87964 1.22252 1.26748 1.95791 1.22423 0.88764 0.86770 1.05220 1.21020 0.90452 0.83511 0.75490 1.90673 1.75760 1.28278 1.51420 1.48207 1.06684 1.06701 1.72287 1.21501 0.79202 1.00613 0.98832 1.22464 1.00379 0.97883 0.97193 1.20456 0.92746 0.89196 0.91298 1.42671 1.19369 1.59194 1.16464 1.19665 0.94982 1.22495 0.99606 0.90512 1.25518 1.02260 1.02690 0.96400 1.69812 1.39769 1.46190 1.06379 0.85135 0.79939 0.77602 0.77483 1.18947 1.22045 1.22539 1.22098 0.94882 1.01227 0.98924 1.22002 0.99026 0.80588 0.99203 0.91863 0.88758 0.92403 0.87743 0.86684 0.91038 0.89712 0.94376 0.92454 0.92978 0.79681 0.94150 0.89587 0.92643 0.88665 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.68 10.24 -129.94 -1.33 -11.01 16 3 C 0.05 0.88 4.76 71.24 0.34 1.22 16 4 C 0.51 14.31 7.78 87.66 0.68 14.99 16 5 O -0.58 -22.45 15.91 16.03 0.25 -22.19 16 6 N -0.60 -15.44 2.98 -819.01 -2.44 -17.88 16 7 C 0.12 3.57 6.43 86.36 0.56 4.13 16 8 C -0.14 -4.89 5.67 30.68 0.17 -4.72 16 9 C 0.17 6.22 2.73 45.03 0.12 6.34 16 10 N -0.74 -35.82 5.12 -322.76 -1.65 -37.47 16 11 C -0.24 -12.72 9.93 84.04 0.83 -11.89 16 12 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 13 C -0.08 -4.34 5.50 84.87 0.47 -3.87 16 14 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 15 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 19 C -0.13 -3.59 5.55 30.65 0.17 -3.42 16 20 C 0.11 2.13 6.34 86.34 0.55 2.68 16 21 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.10 1.45 7.69 -2.39 -0.02 1.44 16 25 H 0.12 1.31 7.94 -2.39 -0.02 1.29 16 26 H 0.07 2.33 7.00 -2.39 -0.02 2.32 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 31 H 0.37 19.56 7.80 -92.71 -0.72 18.83 16 32 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.12 1.33 5.93 -2.38 -0.01 1.32 16 Total: -1.00 -74.37 297.73 2.63 -71.75 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.34 Total: 20.63 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.14 Total: 7.04 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -3.81 Total: -113.90 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.08 Total: -33.20 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -74.37 2.63 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989827991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.343 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds