Wall clock time and date at job start Mon Mar 30 2020 18:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00586 * 2 1 4 4 N 1.34782 * 119.99869 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99795 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.53011 * 109.51044 * 60.10614 * 6 5 4 8 8 C 1.53290 * 109.51589 * 180.25438 * 6 5 4 9 9 N 1.47232 * 108.40967 * 172.23172 * 8 6 5 10 10 C 1.36937 * 121.03256 * 129.46000 * 9 8 6 11 11 H 1.07999 * 119.99830 * 333.77469 * 10 9 8 12 12 C 1.38814 * 119.99671 * 153.77042 * 10 9 8 13 13 N 1.31617 * 119.99660 * 160.02496 * 12 10 9 14 14 Si 1.86793 * 120.00266 * 340.02129 * 12 10 9 15 15 H 1.48503 * 109.46760 * 91.88567 * 14 12 10 16 16 H 1.48497 * 109.47347 * 211.88792 * 14 12 10 17 17 H 1.48498 * 109.47201 * 331.89168 * 14 12 10 18 18 C 1.47155 * 117.98347 * 309.49012 * 9 8 6 19 19 C 1.53294 * 108.41729 * 50.51829 * 18 9 8 20 20 O 1.42960 * 109.51742 * 300.00673 * 6 5 4 21 21 H 1.09005 * 109.47207 * 240.00518 * 1 2 3 22 22 H 1.09006 * 109.46967 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47471 * 120.00458 * 1 2 3 24 24 H 0.96992 * 120.00110 * 0.02562 * 4 2 1 25 25 H 1.09004 * 109.47116 * 60.00866 * 5 4 2 26 26 H 1.08996 * 109.47601 * 300.00641 * 5 4 2 27 27 H 1.09001 * 109.46460 * 299.89523 * 7 6 5 28 28 H 1.08998 * 109.46862 * 59.89749 * 7 6 5 29 29 H 1.08998 * 109.46926 * 179.89857 * 7 6 5 30 30 H 1.09001 * 109.68378 * 291.95518 * 8 6 5 31 31 H 1.09000 * 109.68200 * 52.50646 * 8 6 5 32 32 H 0.97002 * 120.00062 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.68049 * 290.77118 * 18 9 8 34 34 H 1.09003 * 109.67731 * 170.25941 * 18 9 8 35 35 H 1.08998 * 109.51349 * 67.59796 * 19 18 9 36 36 H 1.08996 * 109.51070 * 187.70400 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1558 -2.6097 0.0001 7 6 3.6480 -3.3314 -1.2499 8 6 5.6887 -2.6109 0.0059 9 7 6.1519 -3.9957 0.1947 10 6 7.0851 -4.5481 -0.6413 11 1 7.1872 -4.1835 -1.6527 12 6 7.9000 -5.5767 -0.1887 13 7 8.5037 -6.3662 -1.0516 14 14 8.1398 -5.8404 1.6449 15 1 7.1302 -6.8095 2.1418 16 1 9.5030 -6.3742 1.8941 17 1 7.9768 -4.5473 2.3565 18 6 5.5810 -4.7688 1.3091 19 6 4.0533 -4.6626 1.2397 20 8 3.6801 -3.2844 1.1673 21 1 -0.3634 -0.5138 0.8901 22 1 -0.3633 1.0277 0.0005 23 1 -0.3634 -0.5139 -0.8899 24 1 1.6959 -2.0072 0.0005 25 1 4.0095 -0.6529 0.8896 26 1 4.0089 -0.6539 -0.8904 27 1 2.5580 -3.3333 -1.2506 28 1 4.0110 -2.8165 -2.1394 29 1 4.0131 -4.3584 -1.2501 30 1 6.0598 -2.2263 -0.9441 31 1 6.0532 -1.9875 0.8224 32 1 9.0735 -7.0847 -0.7354 33 1 5.9346 -4.3627 2.2568 34 1 5.8807 -5.8132 1.2227 35 1 3.6919 -5.1846 0.3537 36 1 3.6162 -5.1125 2.1311 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107663631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:07:42 Heat of formation + Delta-G solvation = -54.998705 kcal Electronic energy + Delta-G solvation = -18445.054921 eV Core-core repulsion = 15544.304167 eV Total energy + Delta-G solvation = -2900.750754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90581 -38.90502 -35.20575 -34.45237 -32.29633 -31.48058 -29.85924 -28.41194 -26.54467 -25.56436 -23.19149 -21.67179 -20.47346 -19.06634 -17.23148 -16.79268 -16.34597 -15.74114 -15.52282 -15.14171 -14.52027 -14.11286 -14.03892 -13.86884 -13.26992 -13.05586 -12.73091 -12.46911 -12.38068 -12.08549 -11.85103 -11.62824 -11.47642 -11.03388 -10.84640 -10.40517 -10.32165 -9.92882 -9.69082 -9.56689 -9.43507 -8.99347 -8.61536 -7.06344 -6.02783 -3.40071 2.66339 3.24288 3.28099 3.43683 3.46502 4.00645 4.45035 4.71837 4.80034 5.08081 5.17555 5.19939 5.23967 5.26959 5.35696 5.65930 5.71639 5.75446 5.80714 5.87128 5.95754 6.05440 6.20196 6.21002 6.43020 6.45644 6.49946 6.54303 6.70826 7.55525 7.59098 7.80477 8.22396 8.25249 8.80552 9.61468 9.97471 11.12813 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.048575 B = 0.005995 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.289179 B = 4669.634215 C = 4795.348219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.506 3.494 3 O -0.555 6.555 4 N -0.719 5.719 5 C 0.137 3.863 6 C 0.087 3.913 7 C -0.167 4.167 8 C 0.131 3.869 9 N -0.604 5.604 10 C -0.261 4.261 11 H 0.089 0.911 12 C 0.025 3.975 13 N -0.907 5.907 14 Si 0.884 3.116 15 H -0.288 1.288 16 H -0.302 1.302 17 H -0.271 1.271 18 C 0.089 3.911 19 C 0.046 3.954 20 O -0.380 6.380 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.404 0.596 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.827 6.099 2.496 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.293 3.707 3 O -0.433 6.433 4 N -0.371 5.371 5 C 0.012 3.988 6 C 0.045 3.955 7 C -0.224 4.224 8 C 0.004 3.996 9 N -0.328 5.328 10 C -0.389 4.389 11 H 0.106 0.894 12 C -0.175 4.175 13 N -0.550 5.550 14 Si 0.714 3.286 15 H -0.216 1.216 16 H -0.230 1.230 17 H -0.196 1.196 18 C -0.037 4.037 19 C -0.032 4.032 20 O -0.299 6.299 21 H 0.105 0.895 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.239 0.761 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.342 6.800 2.582 16.082 hybrid contribution 0.239 -0.949 0.896 1.327 sum -14.104 5.851 3.478 15.660 Atomic orbital electron populations 1.21902 0.92019 1.05233 1.04158 1.20779 0.90546 0.83552 0.75843 1.90714 1.70937 1.31521 1.50137 1.45993 1.07588 1.08769 1.74767 1.21340 0.79560 0.95064 1.02792 1.22233 0.96345 0.90713 0.86167 1.22257 0.99667 1.03221 0.97270 1.21480 0.90119 0.87416 1.00612 1.44319 1.46872 1.08160 1.33467 1.18898 1.10608 1.15998 0.93357 0.89388 1.25235 0.97305 0.97619 0.97299 1.69818 1.33700 1.17948 1.33496 0.86973 0.76105 0.77979 0.87497 1.21625 1.23042 1.19575 1.22028 0.92363 0.97707 0.91590 1.23088 0.96667 0.82308 1.01164 1.87837 1.76083 1.23596 1.42423 0.89499 0.89185 0.89550 0.76094 0.90887 0.90108 0.93342 0.91769 0.90229 0.90806 0.94833 0.92651 0.94832 0.90100 0.92568 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.32 36.00 0.37 -1.01 16 2 C 0.51 6.47 7.94 -10.99 -0.09 6.38 16 3 O -0.55 -9.56 17.09 5.56 0.09 -9.46 16 4 N -0.72 -8.84 5.15 -60.30 -0.31 -9.15 16 5 C 0.14 1.96 4.82 -4.04 -0.02 1.95 16 6 C 0.09 1.38 0.76 -90.47 -0.07 1.31 16 7 C -0.17 -2.49 7.92 37.16 0.29 -2.20 16 8 C 0.13 2.51 5.41 -3.49 -0.02 2.49 16 9 N -0.60 -13.83 2.36 -171.76 -0.41 -14.24 16 10 C -0.26 -7.03 10.10 -15.06 -0.15 -7.18 16 11 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 12 C 0.02 0.69 5.26 -17.43 -0.09 0.60 16 13 N -0.91 -27.15 13.97 55.49 0.78 -26.38 16 14 Si 0.88 21.97 24.28 -169.99 -4.13 17.84 16 15 H -0.29 -6.83 6.58 56.52 0.37 -6.46 16 16 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 17 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 18 C 0.09 1.88 4.38 -3.53 -0.02 1.86 16 19 C 0.05 0.78 6.60 37.31 0.25 1.02 16 20 O -0.38 -6.37 9.97 -35.23 -0.35 -6.72 16 21 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.40 4.24 7.20 -40.82 -0.29 3.95 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.60 6.87 -51.93 -0.36 0.24 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.40 6.12 -51.93 -0.32 1.08 16 30 H 0.07 1.38 7.96 -51.93 -0.41 0.97 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.03 0.73 6.86 -51.93 -0.36 0.37 16 34 H 0.08 1.84 4.60 -51.93 -0.24 1.60 16 35 H 0.06 0.94 6.25 -51.93 -0.32 0.62 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -32.19 283.91 -4.89 -37.08 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.30 Total: 1.52 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 0.46 Total: 5.23 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.06 Total: -49.77 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.26 Total: -16.18 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.13 Total: 17.84 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.19 -4.89 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107663631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.921 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds