Wall clock time and date at job start Mon Mar 30 2020 18:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.50700 * 109.46892 * 240.00343 * 2 1 3 5 5 H 1.08001 * 119.99442 * 239.99994 * 4 2 1 6 6 C 1.37877 * 120.00170 * 59.99527 * 4 2 1 7 7 N 1.31512 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46751 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46768 * 120.00138 * 8 6 4 11 11 H 1.48491 * 109.47137 * 240.00402 * 8 6 4 12 12 C 1.50694 * 109.47089 * 120.00168 * 2 1 3 13 13 O 1.21281 * 120.00198 * 103.31188 * 12 2 1 14 14 N 1.34779 * 120.00031 * 283.30515 * 12 2 1 15 15 C 1.47150 * 120.98272 * 174.56380 * 14 12 2 16 16 C 1.53296 * 108.38311 * 129.49195 * 15 14 12 17 17 O 1.42956 * 109.26723 * 52.27752 * 16 15 14 18 18 C 1.42959 * 114.16843 * 297.50264 * 17 16 15 19 19 H 1.08997 * 109.51459 * 302.54699 * 18 17 16 20 20 C 1.52996 * 109.50978 * 182.44768 * 18 17 16 21 21 N 1.46898 * 109.47496 * 65.10156 * 20 18 17 22 22 C 1.47151 * 120.98392 * 354.59359 * 14 12 2 23 23 H 1.09000 * 109.47267 * 53.29534 * 1 2 3 24 24 H 1.08997 * 109.46957 * 173.29956 * 1 2 3 25 25 H 1.09003 * 109.46807 * 293.30027 * 1 2 3 26 26 H 0.96995 * 119.99716 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.68266 * 249.21653 * 15 14 12 28 28 H 1.09001 * 109.68302 * 9.72974 * 15 14 12 29 29 H 1.09003 * 109.51217 * 172.23151 * 16 15 14 30 30 H 1.08997 * 109.50849 * 292.32424 * 16 15 14 31 31 H 1.09009 * 109.47307 * 305.09824 * 20 18 17 32 32 H 1.09003 * 109.47045 * 185.10373 * 20 18 17 33 33 H 1.00898 * 111.00173 * 180.02562 * 21 20 18 34 34 H 1.00901 * 110.99594 * 303.95404 * 21 20 18 35 35 H 1.08994 * 109.68682 * 110.78278 * 22 14 12 36 36 H 1.09002 * 109.70983 * 350.24762 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0081 9 1 3.1474 -2.2862 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 6 2.0324 -0.7104 1.2304 13 8 2.4625 -1.8411 1.1447 14 7 2.0037 -0.0892 2.4261 15 6 2.3768 -0.8011 3.6587 16 6 3.4032 0.0490 4.4162 17 8 2.8909 1.3736 4.5786 18 6 2.6623 2.0675 3.3497 19 1 3.5900 2.1129 2.7793 20 6 2.1755 3.4871 3.6474 21 7 3.2416 4.2389 4.3228 22 6 1.5979 1.3208 2.5377 23 1 -0.3634 0.6142 -0.8239 24 1 -0.3633 -1.0206 -0.1199 25 1 -0.3633 0.4065 0.9439 26 1 0.7094 1.1618 -3.4844 27 1 1.4929 -0.9488 4.2792 28 1 2.8138 -1.7673 3.4067 29 1 3.5895 -0.3920 5.3955 30 1 4.3342 0.0854 3.8505 31 1 1.2977 3.4425 4.2923 32 1 1.9152 3.9852 2.7135 33 1 2.9442 5.1804 4.5307 34 1 3.5455 3.7631 5.1591 35 1 0.6356 1.3869 3.0453 36 1 1.5194 1.7606 1.5434 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121932257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:21 Heat of formation + Delta-G solvation = -81.453624 kcal Electronic energy + Delta-G solvation = -18367.414382 eV Core-core repulsion = 15465.516456 eV Total energy + Delta-G solvation = -2901.897925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91545 -37.97333 -34.79748 -34.21745 -33.74852 -31.17122 -30.22106 -27.78304 -25.18748 -24.76939 -23.59828 -21.75387 -20.78552 -18.54131 -16.73606 -16.57484 -16.11366 -15.89254 -15.45179 -14.97342 -14.61659 -14.51047 -14.13438 -13.78081 -13.18930 -12.84858 -12.54912 -12.48508 -11.90491 -11.49696 -11.43868 -11.25237 -10.99895 -10.74242 -10.67963 -10.53083 -10.28765 -10.00615 -9.89020 -8.97356 -8.79118 -8.63194 -8.35240 -8.06004 -6.05786 -4.08245 3.31341 3.38406 3.41558 3.49979 3.62363 3.76037 4.41484 4.46561 4.96685 5.02084 5.13691 5.19704 5.27675 5.33782 5.46818 5.55902 5.63401 5.75834 5.82690 5.94755 6.09928 6.19204 6.62628 6.79208 6.89388 6.99630 7.01125 7.18276 7.35710 7.41516 7.71657 7.93404 8.04017 8.33554 8.99055 9.14381 9.56968 11.02423 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.006626 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.378597 B = 4224.741976 C = 4709.704333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.501 4.501 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.525 3.475 13 O -0.543 6.543 14 N -0.630 5.630 15 C 0.075 3.925 16 C 0.053 3.947 17 O -0.384 6.384 18 C 0.076 3.924 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.849 5.849 22 C 0.084 3.916 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.012 0.988 26 H 0.261 0.739 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.340 0.660 34 H 0.347 0.653 35 H 0.067 0.933 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 5.452 13.533 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 H 0.067 0.933 4 C -0.540 4.540 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.419 6.419 14 N -0.367 5.367 15 C -0.049 4.049 16 C -0.024 4.024 17 O -0.303 6.303 18 C 0.018 3.982 19 H 0.091 0.909 20 C -0.059 4.059 21 N -0.379 5.379 22 C -0.040 4.040 23 H 0.109 0.891 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.311 4.875 12.817 13.775 hybrid contribution -0.424 -0.447 -0.208 0.650 sum 0.887 4.429 12.609 13.394 Atomic orbital electron populations 1.21705 0.96085 1.01145 0.99656 1.18893 0.94297 0.96591 0.89181 0.93333 1.21151 1.31175 1.12640 0.89010 0.90984 1.24938 0.95050 0.95041 0.99097 1.69884 1.37097 1.23035 1.23501 0.86399 0.78656 0.79779 0.82452 1.19581 1.20987 1.21011 1.22091 0.75582 0.86658 0.83996 1.90522 1.46072 1.19917 1.85382 1.48384 1.69753 1.11629 1.06900 1.22119 0.98525 0.97558 0.86653 1.22913 0.95890 0.82764 1.00850 1.87814 1.85545 1.27184 1.29780 1.22590 0.98675 0.91003 0.85982 0.90925 1.21739 0.92562 0.91705 0.99868 1.58668 1.40364 1.06135 1.32684 1.22324 0.97007 0.82055 1.02618 0.89096 0.94611 0.96902 0.92973 0.91745 0.88497 0.88262 0.92723 0.94566 0.89128 0.84764 0.84059 0.91468 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.71 37.16 0.32 -2.67 16 2 C 0.03 0.78 1.80 -92.92 -0.17 0.61 16 3 H 0.05 1.22 6.48 -51.93 -0.34 0.89 16 4 C -0.50 -14.27 8.35 -34.44 -0.29 -14.56 16 5 H 0.07 2.18 6.88 -52.49 -0.36 1.81 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -24.96 11.40 55.43 0.63 -24.32 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 12.29 6.88 -10.99 -0.08 12.21 16 13 O -0.54 -14.40 15.09 5.56 0.08 -14.32 16 14 N -0.63 -11.70 3.02 -172.28 -0.52 -12.22 16 15 C 0.07 1.16 6.65 -3.53 -0.02 1.14 16 16 C 0.05 0.70 6.98 37.31 0.26 0.96 16 17 O -0.38 -5.27 9.91 -35.23 -0.35 -5.61 16 18 C 0.08 1.06 3.02 -26.58 -0.08 0.98 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.07 0.82 6.49 -3.83 -0.02 0.80 16 21 N -0.85 -8.85 9.62 -10.37 -0.10 -8.95 16 22 C 0.08 1.31 4.95 -3.53 -0.02 1.30 16 23 H 0.09 2.28 6.28 -51.93 -0.33 1.95 16 24 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.01 0.24 7.29 -51.93 -0.38 -0.13 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.62 7.06 -51.93 -0.37 1.25 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.34 2.77 9.08 -39.29 -0.36 2.41 16 34 H 0.35 3.53 8.56 -39.29 -0.34 3.19 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.78 5.56 -51.93 -0.29 1.50 16 LS Contribution 289.66 15.07 4.37 4.37 Total: -1.00 -31.53 289.66 -6.36 -37.90 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.27 Total: 4.06 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.19 Total: 2.32 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.01 Total: -45.49 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.27 Total: -19.93 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.53 -6.36 -37.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121932257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.556 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds