Wall clock time and date at job start Mon Mar 30 2020 18:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.50700 * 109.46892 * 240.00343 * 2 1 3 5 5 H 1.08001 * 119.99442 * 239.99994 * 4 2 1 6 6 C 1.37877 * 120.00170 * 59.99527 * 4 2 1 7 7 N 1.31512 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46751 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46768 * 120.00138 * 8 6 4 11 11 H 1.48491 * 109.47137 * 240.00402 * 8 6 4 12 12 C 1.50694 * 109.47089 * 120.00168 * 2 1 3 13 13 O 1.21281 * 120.00198 * 103.31188 * 12 2 1 14 14 N 1.34779 * 120.00031 * 283.30515 * 12 2 1 15 15 C 1.47150 * 120.98272 * 174.56380 * 14 12 2 16 16 C 1.53296 * 108.38311 * 129.49195 * 15 14 12 17 17 O 1.42956 * 109.26723 * 52.27752 * 16 15 14 18 18 C 1.42959 * 114.16843 * 297.50264 * 17 16 15 19 19 H 1.08997 * 109.51459 * 302.54699 * 18 17 16 20 20 C 1.52996 * 109.50978 * 182.44768 * 18 17 16 21 21 N 1.46898 * 109.47496 * 65.10156 * 20 18 17 22 22 C 1.47151 * 120.98392 * 354.59359 * 14 12 2 23 23 H 1.09000 * 109.47267 * 53.29534 * 1 2 3 24 24 H 1.08997 * 109.46957 * 173.29956 * 1 2 3 25 25 H 1.09003 * 109.46807 * 293.30027 * 1 2 3 26 26 H 0.96995 * 119.99716 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.68266 * 249.21653 * 15 14 12 28 28 H 1.09001 * 109.68302 * 9.72974 * 15 14 12 29 29 H 1.09003 * 109.51217 * 172.23151 * 16 15 14 30 30 H 1.08997 * 109.50849 * 292.32424 * 16 15 14 31 31 H 1.09009 * 109.47307 * 305.09824 * 20 18 17 32 32 H 1.09003 * 109.47045 * 185.10373 * 20 18 17 33 33 H 1.00898 * 111.00173 * 180.02562 * 21 20 18 34 34 H 1.00901 * 110.99594 * 303.95404 * 21 20 18 35 35 H 1.08994 * 109.68682 * 110.78278 * 22 14 12 36 36 H 1.09002 * 109.70983 * 350.24762 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0081 9 1 3.1474 -2.2862 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 6 2.0324 -0.7104 1.2304 13 8 2.4625 -1.8411 1.1447 14 7 2.0037 -0.0892 2.4261 15 6 2.3768 -0.8011 3.6587 16 6 3.4032 0.0490 4.4162 17 8 2.8909 1.3736 4.5786 18 6 2.6623 2.0675 3.3497 19 1 3.5900 2.1129 2.7793 20 6 2.1755 3.4871 3.6474 21 7 3.2416 4.2389 4.3228 22 6 1.5979 1.3208 2.5377 23 1 -0.3634 0.6142 -0.8239 24 1 -0.3633 -1.0206 -0.1199 25 1 -0.3633 0.4065 0.9439 26 1 0.7094 1.1618 -3.4844 27 1 1.4929 -0.9488 4.2792 28 1 2.8138 -1.7673 3.4067 29 1 3.5895 -0.3920 5.3955 30 1 4.3342 0.0854 3.8505 31 1 1.2977 3.4425 4.2923 32 1 1.9152 3.9852 2.7135 33 1 2.9442 5.1804 4.5307 34 1 3.5455 3.7631 5.1591 35 1 0.6356 1.3869 3.0453 36 1 1.5194 1.7606 1.5434 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121932257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:21 Heat of formation + Delta-G solvation = -105.706236 kcal Electronic energy + Delta-G solvation = -18368.466054 eV Core-core repulsion = 15465.516456 eV Total energy + Delta-G solvation = -2902.949598 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36366 -39.48174 -35.97107 -35.84796 -35.42988 -32.76745 -31.74106 -29.09935 -27.27139 -25.93882 -25.13684 -23.19004 -22.04731 -20.15194 -18.53491 -17.89266 -17.73331 -17.18232 -16.83678 -16.29862 -16.20486 -15.99269 -15.37587 -15.08664 -14.60993 -14.59846 -14.20348 -13.68765 -13.41321 -13.09719 -12.97701 -12.75299 -12.65536 -12.59433 -12.28322 -12.21330 -12.05209 -11.72985 -11.16553 -11.05076 -10.63139 -10.31227 -9.61562 -9.50108 -8.18148 -6.27896 1.38294 1.40388 1.53327 1.80085 1.99000 2.43436 2.68406 3.11842 3.44364 3.82642 3.89433 4.00487 4.05202 4.24823 4.29370 4.35493 4.51345 4.60295 4.65589 4.71733 4.78719 4.88589 4.90427 4.98371 5.01432 5.41309 5.52985 5.70026 5.88475 6.06808 6.12932 6.23036 6.47389 6.65434 6.78521 7.33065 7.42654 8.88555 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.006626 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.378597 B = 4224.741976 C = 4709.704333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.029 3.971 3 H 0.045 0.955 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.522 3.478 13 O -0.586 6.586 14 N -0.624 5.624 15 C 0.070 3.930 16 C 0.059 3.941 17 O -0.379 6.379 18 C 0.083 3.917 19 H 0.051 0.949 20 C 0.078 3.922 21 N -0.856 5.856 22 C 0.080 3.920 23 H 0.074 0.926 24 H 0.018 0.982 25 H 0.046 0.954 26 H 0.266 0.734 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.354 0.646 34 H 0.349 0.651 35 H 0.090 0.910 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 6.494 14.787 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.008 3.992 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.197 1.197 12 C 0.314 3.686 13 O -0.465 6.465 14 N -0.359 5.359 15 C -0.052 4.052 16 C -0.018 4.018 17 O -0.298 6.298 18 C 0.024 3.976 19 H 0.069 0.931 20 C -0.054 4.054 21 N -0.388 5.388 22 C -0.043 4.043 23 H 0.093 0.907 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.109 0.891 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.941 5.977 14.115 15.357 hybrid contribution -0.310 -0.731 -0.535 0.958 sum 0.631 5.246 13.580 14.571 Atomic orbital electron populations 1.21504 0.94958 0.99888 1.00757 1.18805 0.95182 0.95992 0.89248 0.93779 1.21265 1.31966 1.12557 0.91200 0.93786 1.25568 0.95093 0.95708 1.01315 1.69944 1.37015 1.23375 1.24391 0.85549 0.78394 0.78588 0.79398 1.20607 1.19886 1.19716 1.21729 0.75630 0.86097 0.85184 1.90492 1.48200 1.21566 1.86287 1.48317 1.68220 1.12827 1.06505 1.22382 1.00161 0.97167 0.85522 1.22985 0.94303 0.82269 1.02260 1.87839 1.85358 1.27226 1.29360 1.22509 0.97066 0.92340 0.85668 0.93060 1.21679 0.93113 0.90015 1.00571 1.58625 1.40259 1.06967 1.32933 1.22529 0.98801 0.80266 1.02701 0.90743 0.96250 0.93516 0.92458 0.89562 0.90026 0.84495 0.93846 0.93113 0.88743 0.83152 0.83794 0.89142 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.30 8.71 71.98 0.63 -4.67 16 2 C 0.03 1.46 1.80 -12.29 -0.02 1.44 16 3 H 0.04 2.27 6.48 -2.39 -0.02 2.25 16 4 C -0.53 -31.12 8.35 25.60 0.21 -30.91 16 5 H 0.04 2.77 6.88 -2.91 -0.02 2.75 16 6 C 0.02 1.28 5.30 84.66 0.45 1.72 16 7 N -0.91 -50.57 11.40 21.45 0.24 -50.33 16 8 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 C 0.52 24.87 6.88 87.65 0.60 25.47 16 13 O -0.59 -32.09 15.09 -3.03 -0.05 -32.13 16 14 N -0.62 -22.74 3.02 -817.36 -2.47 -25.21 16 15 C 0.07 2.07 6.65 86.35 0.57 2.65 16 16 C 0.06 1.41 6.98 72.08 0.50 1.91 16 17 O -0.38 -9.33 9.91 -148.98 -1.48 -10.81 16 18 C 0.08 2.15 3.02 30.69 0.09 2.24 16 19 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 20 C 0.08 1.56 6.49 86.30 0.56 2.12 16 21 N -0.86 -15.82 9.62 -186.71 -1.80 -17.61 16 22 C 0.08 2.37 4.95 86.35 0.43 2.80 16 23 H 0.07 3.73 6.28 -2.39 -0.01 3.72 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 1.81 7.29 -2.39 -0.02 1.79 16 26 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.08 2.70 7.06 -2.39 -0.02 2.69 16 29 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.35 4.86 9.08 -89.70 -0.81 4.04 16 34 H 0.35 6.22 8.56 -89.69 -0.77 5.45 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 3.07 5.56 -2.39 -0.01 3.06 16 Total: -1.00 -68.44 289.66 0.03 -68.42 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.49 Total: 15.86 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.03 Total: 4.78 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -4.02 Total: -93.15 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.52 Total: -42.94 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.44 0.03 -68.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121932257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.289 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds