Wall clock time and date at job start Mon Mar 30 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46739 * 2 1 4 4 C 1.42908 * 113.99786 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.54788 * 4.32956 * 4 3 2 6 6 C 1.53079 * 117.51129 * 218.61264 * 4 3 2 7 7 C 1.52993 * 117.49753 * 150.00475 * 4 3 2 8 8 H 1.09004 * 117.49601 * 215.00405 * 7 4 3 9 9 C 1.50694 * 117.50189 * 359.97438 * 7 4 3 10 10 O 1.21283 * 120.00146 * 359.91379 * 9 7 4 11 11 N 1.34777 * 120.00104 * 179.91810 * 9 7 4 12 12 C 1.46504 * 119.99858 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46932 * 179.97438 * 12 11 9 14 14 N 1.46504 * 109.46932 * 180.02562 * 13 12 11 15 15 C 1.36934 * 119.99567 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00537 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99798 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00134 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00229 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46986 * 270.00112 * 19 17 15 21 21 H 1.48496 * 109.47029 * 30.00128 * 19 17 15 22 22 H 1.48499 * 109.47352 * 149.99958 * 19 17 15 23 23 H 1.08996 * 109.46729 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46680 * 299.99398 * 1 2 3 25 25 H 1.08989 * 109.47453 * 59.99592 * 1 2 3 26 26 H 1.09000 * 109.46680 * 240.00602 * 2 1 3 27 27 H 1.08989 * 109.47453 * 120.00408 * 2 1 3 28 28 H 1.09000 * 117.49288 * 145.03464 * 6 4 3 29 29 H 1.09003 * 117.51138 * 359.97438 * 6 4 3 30 30 H 0.97000 * 120.00323 * 359.97438 * 11 9 7 31 31 H 1.08998 * 109.47306 * 59.99432 * 12 11 9 32 32 H 1.09005 * 109.46713 * 299.99331 * 12 11 9 33 33 H 1.08998 * 109.47524 * 59.99644 * 13 12 11 34 34 H 1.08997 * 109.47093 * 299.99545 * 13 12 11 35 35 H 0.97000 * 119.99825 * 359.97438 * 14 13 12 36 36 H 0.97005 * 119.99717 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 -0.0752 6 6 4.0524 2.5735 0.8466 7 6 4.0420 2.6878 -0.6791 8 1 4.9901 2.5550 -1.2003 9 6 3.0956 3.6850 -1.2962 10 8 1.8985 3.4973 -1.2446 11 7 3.5795 4.7855 -1.9055 12 6 2.6594 5.7553 -2.5049 13 6 3.4602 6.9020 -3.1252 14 7 2.5401 7.8721 -3.7241 15 6 3.0317 8.9908 -4.3421 16 1 4.0977 9.1582 -4.3877 17 6 2.1600 9.9097 -4.9101 18 7 0.8609 9.7055 -4.8550 19 14 2.8305 11.4362 -5.7525 20 1 2.9504 12.5360 -4.7619 21 1 4.1677 11.1382 -6.3256 22 1 1.9066 11.8478 -6.8398 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8898 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 5.0072 2.3651 1.3292 29 1 3.3746 3.2200 1.4040 30 1 4.5369 4.9359 -1.9465 31 1 1.9961 6.1504 -1.7355 32 1 2.0678 5.2649 -3.2780 33 1 4.1239 6.5073 -3.8945 34 1 4.0515 7.3922 -2.3519 35 1 1.5827 7.7219 -3.6828 36 1 0.5126 8.9130 -4.4172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124141390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:27 Heat of formation + Delta-G solvation = -43.171962 kcal Electronic energy + Delta-G solvation = -16903.196697 eV Core-core repulsion = 14002.958789 eV Total energy + Delta-G solvation = -2900.237908 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94265 -38.08798 -35.85399 -35.13260 -33.94396 -31.20441 -30.84970 -27.73870 -24.46324 -23.04543 -22.95940 -22.32727 -21.53483 -19.95491 -17.86887 -17.38153 -16.01383 -15.96047 -15.67117 -15.24918 -14.81233 -14.51447 -14.00321 -13.67546 -13.53347 -13.10757 -12.84359 -12.67969 -12.54487 -12.29280 -11.48843 -11.34418 -11.18639 -11.06998 -10.70970 -10.64679 -10.59791 -10.02404 -9.66636 -9.28240 -9.16801 -8.94925 -8.76830 -7.04803 -6.11731 -3.12835 2.62669 3.22030 3.35091 3.51809 3.57073 3.70488 3.71194 4.51160 4.58409 4.68876 4.73004 4.90371 4.97089 5.09865 5.17251 5.17380 5.40723 5.52064 5.54703 5.57357 5.75200 5.76231 5.76960 5.82549 6.01981 6.08010 6.49596 6.66270 6.75268 7.11797 7.71462 7.78295 8.47166 8.74428 9.19932 10.06293 10.20189 11.36820 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047962 B = 0.003548 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.659918 B = 7889.129723 C = 8359.302293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.050 3.950 5 H 0.117 0.883 6 C -0.161 4.161 7 C -0.195 4.195 8 H 0.127 0.873 9 C 0.535 3.465 10 O -0.516 6.516 11 N -0.725 5.725 12 C 0.112 3.888 13 C 0.151 3.849 14 N -0.741 5.741 15 C -0.336 4.336 16 H 0.066 0.934 17 C -0.044 4.044 18 N -0.942 5.942 19 Si 1.086 2.914 20 H -0.295 1.295 21 H -0.294 1.294 22 H -0.287 1.287 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.398 0.602 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.369 0.631 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 -19.888 11.183 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.241 6.241 4 C -0.010 4.010 5 H 0.134 0.866 6 C -0.199 4.199 7 C -0.217 4.217 8 H 0.145 0.855 9 C 0.320 3.680 10 O -0.390 6.390 11 N -0.377 5.377 12 C -0.011 4.011 13 C 0.022 3.978 14 N -0.388 5.388 15 C -0.467 4.467 16 H 0.084 0.916 17 C -0.242 4.242 18 N -0.587 5.587 19 Si 0.916 3.084 20 H -0.222 1.222 21 H -0.221 1.221 22 H -0.213 1.213 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.232 0.768 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.202 0.798 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.622 -18.425 10.369 22.155 hybrid contribution 0.972 -1.522 0.758 1.959 sum 7.594 -19.947 11.127 24.070 Atomic orbital electron populations 1.21709 0.93549 1.01876 1.03629 1.22542 0.95978 0.83983 0.99614 1.88200 1.16962 1.25389 1.93534 1.22542 0.83707 0.92876 1.01837 0.86591 1.23434 1.02964 1.02485 0.91015 1.22775 1.01385 1.00293 0.97214 0.85505 1.19463 0.88640 0.81375 0.78528 1.90767 1.15453 1.75401 1.57388 1.45883 1.10565 1.22893 1.58352 1.21528 0.92643 0.89423 0.97548 1.20689 0.92948 0.88902 0.95222 1.42213 1.04294 1.23656 1.68610 1.20034 0.93653 0.99964 1.33012 0.91592 1.25849 0.94786 1.02838 1.00730 1.70842 1.11790 1.29715 1.46338 0.83162 0.74127 0.74861 0.76229 1.22232 1.22119 1.21300 0.91291 0.91864 0.91471 0.93465 0.93577 0.87166 0.87585 0.76826 0.91591 0.91575 0.95739 0.95724 0.79750 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.06 0.54 6.53 37.16 0.24 0.79 16 3 O -0.32 -4.37 8.48 -57.36 -0.49 -4.86 16 4 C 0.05 0.51 6.41 -26.69 -0.17 0.34 16 5 H 0.12 0.80 7.93 -51.93 -0.41 0.39 16 6 C -0.16 -1.48 10.19 -26.69 -0.27 -1.76 16 7 C -0.20 -2.09 6.18 -91.78 -0.57 -2.66 16 8 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.54 8.28 7.61 -10.99 -0.08 8.20 16 10 O -0.52 -10.23 14.92 -16.58 -0.25 -10.48 16 11 N -0.72 -10.66 5.56 -60.29 -0.33 -11.00 16 12 C 0.11 2.05 5.79 -4.04 -0.02 2.03 16 13 C 0.15 3.10 6.37 -4.04 -0.03 3.07 16 14 N -0.74 -19.43 5.60 -59.91 -0.34 -19.76 16 15 C -0.34 -9.72 9.99 -15.06 -0.15 -9.87 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 18 N -0.94 -29.81 13.70 55.49 0.76 -29.05 16 19 Si 1.09 26.25 29.92 -169.99 -5.09 21.17 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.75 8.14 -51.94 -0.42 0.33 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.36 8.14 -51.94 -0.42 -0.07 16 28 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.40 4.63 8.47 -40.82 -0.35 4.29 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.37 9.94 6.50 -40.82 -0.27 9.67 16 36 H 0.26 8.03 6.77 -40.82 -0.28 7.75 16 LS Contribution 309.56 15.07 4.66 4.66 Total: -1.00 -36.10 309.56 -7.41 -43.50 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.58 Total: 8.13 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.76 Total: -2.32 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.09 Total: -59.81 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.73 Total: -15.34 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.09 Total: 21.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.10 -7.41 -43.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124141390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.333 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds