Wall clock time and date at job start Mon Mar 30 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46739 * 2 1 4 4 C 1.42908 * 113.99786 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.54788 * 4.32956 * 4 3 2 6 6 C 1.53079 * 117.51129 * 218.61264 * 4 3 2 7 7 C 1.52993 * 117.49753 * 150.00475 * 4 3 2 8 8 H 1.09004 * 117.49601 * 215.00405 * 7 4 3 9 9 C 1.50694 * 117.50189 * 359.97438 * 7 4 3 10 10 O 1.21283 * 120.00146 * 359.91379 * 9 7 4 11 11 N 1.34777 * 120.00104 * 179.91810 * 9 7 4 12 12 C 1.46504 * 119.99858 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46932 * 179.97438 * 12 11 9 14 14 N 1.46504 * 109.46932 * 180.02562 * 13 12 11 15 15 C 1.36934 * 119.99567 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00537 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99798 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00134 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00229 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46986 * 270.00112 * 19 17 15 21 21 H 1.48496 * 109.47029 * 30.00128 * 19 17 15 22 22 H 1.48499 * 109.47352 * 149.99958 * 19 17 15 23 23 H 1.08996 * 109.46729 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46680 * 299.99398 * 1 2 3 25 25 H 1.08989 * 109.47453 * 59.99592 * 1 2 3 26 26 H 1.09000 * 109.46680 * 240.00602 * 2 1 3 27 27 H 1.08989 * 109.47453 * 120.00408 * 2 1 3 28 28 H 1.09000 * 117.49288 * 145.03464 * 6 4 3 29 29 H 1.09003 * 117.51138 * 359.97438 * 6 4 3 30 30 H 0.97000 * 120.00323 * 359.97438 * 11 9 7 31 31 H 1.08998 * 109.47306 * 59.99432 * 12 11 9 32 32 H 1.09005 * 109.46713 * 299.99331 * 12 11 9 33 33 H 1.08998 * 109.47524 * 59.99644 * 13 12 11 34 34 H 1.08997 * 109.47093 * 299.99545 * 13 12 11 35 35 H 0.97000 * 119.99825 * 359.97438 * 14 13 12 36 36 H 0.97005 * 119.99717 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 -0.0752 6 6 4.0524 2.5735 0.8466 7 6 4.0420 2.6878 -0.6791 8 1 4.9901 2.5550 -1.2003 9 6 3.0956 3.6850 -1.2962 10 8 1.8985 3.4973 -1.2446 11 7 3.5795 4.7855 -1.9055 12 6 2.6594 5.7553 -2.5049 13 6 3.4602 6.9020 -3.1252 14 7 2.5401 7.8721 -3.7241 15 6 3.0317 8.9908 -4.3421 16 1 4.0977 9.1582 -4.3877 17 6 2.1600 9.9097 -4.9101 18 7 0.8609 9.7055 -4.8550 19 14 2.8305 11.4362 -5.7525 20 1 2.9504 12.5360 -4.7619 21 1 4.1677 11.1382 -6.3256 22 1 1.9066 11.8478 -6.8398 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8898 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 5.0072 2.3651 1.3292 29 1 3.3746 3.2200 1.4040 30 1 4.5369 4.9359 -1.9465 31 1 1.9961 6.1504 -1.7355 32 1 2.0678 5.2649 -3.2780 33 1 4.1239 6.5073 -3.8945 34 1 4.0515 7.3922 -2.3519 35 1 1.5827 7.7219 -3.6828 36 1 0.5126 8.9130 -4.4172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124141390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:27 Heat of formation + Delta-G solvation = -69.773297 kcal Electronic energy + Delta-G solvation = -16904.350217 eV Core-core repulsion = 14002.958789 eV Total energy + Delta-G solvation = -2901.391428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05190 -39.06820 -37.52855 -36.08763 -35.64416 -33.11074 -31.67358 -29.48144 -26.04189 -24.68815 -23.76912 -23.19997 -22.99152 -21.11944 -19.50089 -18.83801 -17.22115 -17.09761 -16.69076 -16.41207 -16.35529 -15.98752 -15.61160 -15.24114 -14.89985 -14.65256 -13.95422 -13.58138 -13.32510 -13.14786 -13.03683 -12.93796 -12.60306 -12.54598 -12.11836 -11.88312 -11.86098 -11.44176 -11.37142 -11.01017 -10.86334 -10.17013 -10.05086 -9.21643 -8.45539 -5.41741 1.51423 1.58567 1.70249 1.84244 2.04423 2.60712 2.71773 2.87511 3.36005 3.67376 3.81662 3.87860 3.89655 3.98701 4.07991 4.17273 4.18581 4.39930 4.43271 4.48969 4.49542 4.80880 4.87344 4.91555 4.99148 5.00463 5.03224 5.24297 5.35317 5.53738 6.39592 6.42452 6.56979 7.00263 7.29004 7.89368 8.01038 9.06116 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047962 B = 0.003548 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.659918 B = 7889.129723 C = 8359.302293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.368 6.368 4 C 0.040 3.960 5 H 0.156 0.844 6 C -0.147 4.147 7 C -0.202 4.202 8 H 0.166 0.834 9 C 0.527 3.473 10 O -0.568 6.568 11 N -0.713 5.713 12 C 0.130 3.870 13 C 0.156 3.844 14 N -0.760 5.760 15 C -0.340 4.340 16 H 0.075 0.925 17 C -0.106 4.106 18 N -0.974 5.974 19 Si 1.136 2.864 20 H -0.283 1.283 21 H -0.268 1.268 22 H -0.293 1.293 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.079 0.921 30 H 0.416 0.584 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.360 0.640 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.714 -20.981 11.733 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.287 6.287 4 C -0.019 4.019 5 H 0.173 0.827 6 C -0.185 4.185 7 C -0.223 4.223 8 H 0.184 0.816 9 C 0.315 3.685 10 O -0.446 6.446 11 N -0.366 5.366 12 C 0.005 3.995 13 C 0.029 3.971 14 N -0.405 5.405 15 C -0.471 4.471 16 H 0.093 0.907 17 C -0.296 4.296 18 N -0.622 5.622 19 Si 0.959 3.041 20 H -0.209 1.209 21 H -0.193 1.193 22 H -0.220 1.220 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.170 0.830 29 H 0.098 0.902 30 H 0.253 0.747 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.192 0.808 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.576 -19.558 10.949 24.374 hybrid contribution 0.089 -1.261 0.644 1.419 sum 9.665 -20.819 11.593 25.715 Atomic orbital electron populations 1.21751 0.94139 1.03121 1.01828 1.22725 0.95674 0.82972 1.01221 1.88155 1.19187 1.27542 1.93784 1.23027 0.82760 0.94375 1.01691 0.82706 1.23532 1.04096 1.01198 0.89634 1.22861 1.01733 0.99332 0.98359 0.81635 1.20414 0.88864 0.81668 0.77600 1.90750 1.18070 1.76530 1.59244 1.45734 1.10988 1.22113 1.57813 1.21068 0.92620 0.89347 0.96468 1.20769 0.92346 0.88505 0.95467 1.42476 1.04707 1.24330 1.68998 1.20443 0.94128 1.00452 1.32029 0.90721 1.27428 0.94431 1.06111 1.01671 1.70967 1.13219 1.29789 1.48209 0.82539 0.74531 0.71667 0.75317 1.20931 1.19325 1.21962 0.88514 0.92810 0.94070 0.92465 0.91095 0.83046 0.90187 0.74667 0.93490 0.93337 0.94486 0.94559 0.80816 0.94661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 10.28 71.98 0.74 -2.15 16 2 C 0.05 0.92 6.53 71.98 0.47 1.39 16 3 O -0.37 -9.78 8.48 -127.82 -1.08 -10.87 16 4 C 0.04 0.72 6.41 30.62 0.20 0.92 16 5 H 0.16 1.47 7.93 -2.39 -0.02 1.46 16 6 C -0.15 -2.30 10.19 30.62 0.31 -1.99 16 7 C -0.20 -3.80 6.18 -11.54 -0.07 -3.87 16 8 H 0.17 1.78 8.14 -2.38 -0.02 1.76 16 9 C 0.53 16.06 7.61 87.66 0.67 16.72 16 10 O -0.57 -23.29 14.92 18.12 0.27 -23.02 16 11 N -0.71 -20.34 5.56 -463.05 -2.57 -22.92 16 12 C 0.13 4.82 5.79 86.38 0.50 5.32 16 13 C 0.16 6.32 6.37 86.38 0.55 6.87 16 14 N -0.76 -40.18 5.60 -343.44 -1.92 -42.10 16 15 C -0.34 -19.53 9.99 84.03 0.84 -18.69 16 16 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.11 -6.26 5.50 84.86 0.47 -5.79 16 18 N -0.97 -62.83 13.70 21.65 0.30 -62.53 16 19 Si 1.14 52.26 29.92 68.60 2.05 54.31 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 23 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.42 8.75 8.47 -92.71 -0.79 7.96 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.36 20.06 6.50 -92.71 -0.60 19.46 16 36 H 0.24 15.77 6.77 -92.70 -0.63 15.14 16 Total: -1.00 -80.63 309.56 1.54 -79.09 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.17 Total: 29.29 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.67 Total: -1.26 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -4.20 Total: -127.55 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.81 Total: -33.89 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 2.05 Total: 54.31 kcal Total: -80.63 1.54 -79.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124141390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.320 kcal (2) G-P(sol) polarization free energy of solvation -80.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds