Wall clock time and date at job start Mon Mar 30 2020 18:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55104 * 4.33482 * 4 3 2 6 6 C 1.53000 * 117.49678 * 218.62266 * 4 3 2 7 7 C 1.53000 * 117.49656 * 150.00076 * 4 3 2 8 8 H 1.09007 * 117.49866 * 359.97438 * 7 4 3 9 9 C 1.50694 * 117.50059 * 214.97916 * 7 4 3 10 10 O 1.21280 * 119.99717 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00611 * 179.97438 * 9 7 4 12 12 C 1.46496 * 120.00349 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47179 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.47281 * 180.02562 * 13 12 11 15 15 C 1.36942 * 119.99935 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99731 * 359.97438 * 15 14 13 17 17 C 1.38803 * 119.99948 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00216 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46850 * 90.00058 * 19 17 15 21 21 H 1.48500 * 109.47229 * 210.00047 * 19 17 15 22 22 H 1.48490 * 109.46873 * 330.00336 * 19 17 15 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.08997 * 117.50438 * 0.02562 * 6 4 3 29 29 H 1.09003 * 117.49498 * 145.02905 * 6 4 3 30 30 H 0.97003 * 119.99468 * 0.02562 * 11 9 7 31 31 H 1.09002 * 109.47298 * 300.00259 * 12 11 9 32 32 H 1.09001 * 109.46928 * 60.00595 * 12 11 9 33 33 H 1.09006 * 109.47226 * 300.00370 * 13 12 11 34 34 H 1.09000 * 109.46919 * 59.99703 * 13 12 11 35 35 H 0.96993 * 119.99942 * 359.97438 * 14 13 12 36 36 H 0.96999 * 120.00532 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9770 0.5198 -0.0734 6 6 4.0510 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4087 -1.1251 9 6 5.3542 2.5039 -1.3967 10 8 5.8842 1.4133 -1.4221 11 7 5.9378 3.5512 -2.0124 12 6 7.2131 3.3727 -2.7107 13 6 7.6536 4.7066 -3.3171 14 7 8.9287 4.5280 -4.0159 15 6 9.5215 5.5922 -4.6415 16 1 9.0488 6.5630 -4.6200 17 6 10.7299 5.4231 -5.3032 18 7 11.3058 4.2399 -5.3298 19 14 11.5383 6.8746 -6.1572 20 1 12.4414 7.5691 -5.2046 21 1 12.3240 6.3898 -7.3203 22 1 10.4922 7.8187 -6.6254 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3725 3.2189 1.4051 29 1 5.0054 2.3649 1.3315 30 1 5.5136 4.4233 -1.9924 31 1 7.9687 3.0277 -2.0048 32 1 7.0929 2.6347 -3.5038 33 1 6.8981 5.0520 -4.0229 34 1 7.7738 5.4443 -2.5237 35 1 9.3530 3.6560 -4.0355 36 1 12.1501 4.1216 -5.7926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124141392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:34 Heat of formation + Delta-G solvation = -48.832571 kcal Electronic energy + Delta-G solvation = -16543.104564 eV Core-core repulsion = 13642.621193 eV Total energy + Delta-G solvation = -2900.483370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03509 -38.34526 -35.87458 -35.11824 -33.82914 -31.29013 -31.04236 -27.98976 -24.65915 -23.20609 -23.02781 -22.30119 -21.43971 -19.99909 -17.88298 -17.31545 -16.42120 -15.89601 -15.83178 -15.34243 -14.84539 -14.51186 -14.04777 -13.77195 -13.18787 -13.09750 -12.94518 -12.83226 -12.62923 -12.37219 -11.55021 -11.43807 -11.26348 -11.11474 -10.84285 -10.81111 -10.74910 -10.12999 -9.92867 -9.75130 -9.40721 -8.99638 -8.83733 -7.00180 -5.80162 -3.11058 2.49035 2.89309 3.42115 3.44349 3.48310 3.49686 3.70883 4.52214 4.56220 4.61848 4.74085 4.76978 4.91645 4.99090 5.07730 5.21949 5.42712 5.49534 5.52810 5.53329 5.57295 5.74281 5.76998 5.78365 5.95613 6.14234 6.47887 6.69737 6.73550 6.91554 7.60815 7.65392 8.29690 8.37576 9.48672 10.03323 10.38101 11.42446 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.071711 B = 0.003035 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.363141 B = 9222.165904 C = 9288.857450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.052 3.948 5 H 0.125 0.875 6 C -0.155 4.155 7 C -0.192 4.192 8 H 0.129 0.871 9 C 0.541 3.459 10 O -0.545 6.545 11 N -0.716 5.716 12 C 0.110 3.890 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.401 0.599 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.386 0.614 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.918 -5.328 12.368 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.276 6.276 4 C -0.007 4.007 5 H 0.143 0.857 6 C -0.193 4.193 7 C -0.214 4.214 8 H 0.147 0.853 9 C 0.327 3.673 10 O -0.423 6.423 11 N -0.367 5.367 12 C -0.013 4.013 13 C 0.016 3.984 14 N -0.375 5.375 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.235 0.765 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.220 0.780 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.608 -5.793 12.251 23.835 hybrid contribution 0.601 0.841 -0.602 1.197 sum -19.007 -4.952 11.649 22.836 Atomic orbital electron populations 1.21758 0.93534 1.02429 1.03166 1.22576 0.95505 0.83212 1.00675 1.87802 1.18630 1.27172 1.93998 1.22607 0.81882 0.94447 1.01770 0.85730 1.23440 1.03054 1.01957 0.90821 1.22683 0.97547 1.04490 0.96648 0.85278 1.19517 0.85061 0.84238 0.78525 1.90700 1.65142 1.25445 1.60992 1.45848 1.24190 1.12123 1.54541 1.21605 0.83812 0.99588 0.96330 1.20758 0.89919 0.92947 0.94731 1.42194 1.20812 1.11072 1.63422 1.19195 1.02228 0.89893 1.26177 0.91010 1.24788 0.97912 0.96941 1.01246 1.69670 1.19068 1.21391 1.47791 0.86138 0.79254 0.81511 0.78949 1.21613 1.21678 1.20696 0.91763 0.90893 0.91831 0.92812 0.92927 0.87142 0.87395 0.76453 0.91242 0.91228 0.95752 0.95741 0.78005 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.47 6.53 37.16 0.24 0.71 16 3 O -0.36 -3.83 10.60 -35.23 -0.37 -4.20 16 4 C 0.05 0.56 5.96 -26.73 -0.16 0.40 16 5 H 0.13 1.41 7.45 -51.93 -0.39 1.02 16 6 C -0.15 -1.47 10.18 -26.73 -0.27 -1.74 16 7 C -0.19 -2.13 6.14 -91.77 -0.56 -2.69 16 8 H 0.13 1.23 8.14 -51.92 -0.42 0.80 16 9 C 0.54 7.89 7.61 -10.99 -0.08 7.80 16 10 O -0.54 -10.01 16.26 5.56 0.09 -9.92 16 11 N -0.72 -10.02 5.56 -60.30 -0.33 -10.36 16 12 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 13 C 0.14 2.86 6.37 -4.04 -0.03 2.83 16 14 N -0.73 -18.71 5.60 -59.91 -0.34 -19.05 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.40 4.45 8.47 -40.82 -0.35 4.10 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.39 10.47 7.67 -40.82 -0.31 10.15 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -33.18 313.73 -6.94 -40.11 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.66 Total: 7.88 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.75 Total: 1.15 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.05 Total: -57.11 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.28 Total: -14.12 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.18 -6.94 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124141392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.719 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds