Wall clock time and date at job start Mon Mar 30 2020 18:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55104 * 4.33482 * 4 3 2 6 6 C 1.53000 * 117.49678 * 218.62266 * 4 3 2 7 7 C 1.53000 * 117.49656 * 150.00076 * 4 3 2 8 8 H 1.09007 * 117.49866 * 359.97438 * 7 4 3 9 9 C 1.50694 * 117.50059 * 214.97916 * 7 4 3 10 10 O 1.21280 * 119.99717 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00611 * 179.97438 * 9 7 4 12 12 C 1.46496 * 120.00349 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47179 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.47281 * 180.02562 * 13 12 11 15 15 C 1.36942 * 119.99935 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99731 * 359.97438 * 15 14 13 17 17 C 1.38803 * 119.99948 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00216 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46850 * 90.00058 * 19 17 15 21 21 H 1.48500 * 109.47229 * 210.00047 * 19 17 15 22 22 H 1.48490 * 109.46873 * 330.00336 * 19 17 15 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.08997 * 117.50438 * 0.02562 * 6 4 3 29 29 H 1.09003 * 117.49498 * 145.02905 * 6 4 3 30 30 H 0.97003 * 119.99468 * 0.02562 * 11 9 7 31 31 H 1.09002 * 109.47298 * 300.00259 * 12 11 9 32 32 H 1.09001 * 109.46928 * 60.00595 * 12 11 9 33 33 H 1.09006 * 109.47226 * 300.00370 * 13 12 11 34 34 H 1.09000 * 109.46919 * 59.99703 * 13 12 11 35 35 H 0.96993 * 119.99942 * 359.97438 * 14 13 12 36 36 H 0.96999 * 120.00532 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9770 0.5198 -0.0734 6 6 4.0510 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4087 -1.1251 9 6 5.3542 2.5039 -1.3967 10 8 5.8842 1.4133 -1.4221 11 7 5.9378 3.5512 -2.0124 12 6 7.2131 3.3727 -2.7107 13 6 7.6536 4.7066 -3.3171 14 7 8.9287 4.5280 -4.0159 15 6 9.5215 5.5922 -4.6415 16 1 9.0488 6.5630 -4.6200 17 6 10.7299 5.4231 -5.3032 18 7 11.3058 4.2399 -5.3298 19 14 11.5383 6.8746 -6.1572 20 1 12.4414 7.5691 -5.2046 21 1 12.3240 6.3898 -7.3203 22 1 10.4922 7.8187 -6.6254 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3725 3.2189 1.4051 29 1 5.0054 2.3649 1.3315 30 1 5.5136 4.4233 -1.9924 31 1 7.9687 3.0277 -2.0048 32 1 7.0929 2.6347 -3.5038 33 1 6.8981 5.0520 -4.0229 34 1 7.7738 5.4443 -2.5237 35 1 9.3530 3.6560 -4.0355 36 1 12.1501 4.1216 -5.7926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124141392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:34 Heat of formation + Delta-G solvation = -73.501254 kcal Electronic energy + Delta-G solvation = -16544.174278 eV Core-core repulsion = 13642.621193 eV Total energy + Delta-G solvation = -2901.553085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14215 -39.24166 -37.38712 -36.08075 -35.50840 -33.15790 -31.72101 -29.67237 -26.21638 -24.58845 -23.80219 -23.14605 -22.96320 -21.15770 -19.33537 -18.79287 -17.42972 -17.15071 -16.67409 -16.53029 -16.49703 -15.80829 -15.39485 -15.16681 -14.98656 -14.68626 -13.74366 -13.64797 -13.36823 -13.11945 -13.06204 -13.03519 -12.68044 -12.53812 -12.17416 -12.09580 -11.91510 -11.86393 -11.62828 -11.06054 -11.00258 -10.22918 -10.18471 -9.08118 -7.97913 -5.29663 1.38485 1.48141 1.50677 1.59112 1.87703 2.51045 2.61987 2.81570 3.36313 3.63177 3.74707 3.94582 4.01360 4.05305 4.17205 4.18647 4.19868 4.33370 4.45961 4.51289 4.56078 4.79074 4.90194 4.98777 5.01979 5.02884 5.11200 5.27660 5.34365 5.47900 6.17289 6.22908 6.48544 7.15961 7.29051 8.00530 8.23601 9.25816 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.071711 B = 0.003035 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.363141 B = 9222.165904 C = 9288.857450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.368 6.368 4 C 0.044 3.956 5 H 0.114 0.886 6 C -0.135 4.135 7 C -0.194 4.194 8 H 0.150 0.850 9 C 0.539 3.461 10 O -0.588 6.588 11 N -0.705 5.705 12 C 0.127 3.873 13 C 0.149 3.851 14 N -0.748 5.748 15 C -0.249 4.249 16 H 0.083 0.917 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.981 3.019 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.266 1.266 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.419 0.581 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.374 0.626 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.538 -3.922 13.117 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.287 6.287 4 C -0.015 4.015 5 H 0.131 0.869 6 C -0.173 4.173 7 C -0.215 4.215 8 H 0.168 0.832 9 C 0.327 3.673 10 O -0.469 6.469 11 N -0.356 5.356 12 C 0.002 3.998 13 C 0.022 3.978 14 N -0.391 5.391 15 C -0.380 4.380 16 H 0.101 0.899 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.809 3.191 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.190 1.190 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.126 0.874 30 H 0.256 0.744 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.205 0.795 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.295 -4.337 13.026 25.338 hybrid contribution 1.017 0.360 -0.784 1.334 sum -20.278 -3.977 12.242 24.019 Atomic orbital electron populations 1.21769 0.92137 1.03623 1.02983 1.22791 0.96660 0.82332 1.01037 1.87783 1.18236 1.28570 1.94083 1.22590 0.82176 0.94208 1.02506 0.86874 1.23526 1.03184 1.00957 0.89595 1.22648 0.95760 1.05496 0.97596 0.83202 1.20138 0.85875 0.83385 0.77885 1.90685 1.66535 1.27137 1.62504 1.45664 1.22940 1.13146 1.53895 1.21177 0.85086 0.97900 0.95628 1.20848 0.87818 0.94280 0.94832 1.42436 1.22644 1.10080 1.63970 1.19656 1.02235 0.90817 1.25289 0.89866 1.25694 0.98936 0.99651 1.02734 1.69839 1.19430 1.23649 1.49257 0.85041 0.78286 0.78381 0.77421 1.21213 1.22283 1.19022 0.92278 0.89057 0.91617 0.93172 0.91924 0.84925 0.87404 0.74417 0.92694 0.92878 0.94473 0.94319 0.79457 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.73 6.53 71.98 0.47 1.20 16 3 O -0.37 -7.33 10.60 -148.98 -1.58 -8.90 16 4 C 0.04 0.90 5.96 30.59 0.18 1.08 16 5 H 0.11 2.56 7.45 -2.39 -0.02 2.54 16 6 C -0.14 -2.24 10.18 30.60 0.31 -1.93 16 7 C -0.19 -3.92 6.14 -11.54 -0.07 -3.99 16 8 H 0.15 2.41 8.14 -2.38 -0.02 2.39 16 9 C 0.54 15.27 7.61 87.66 0.67 15.93 16 10 O -0.59 -21.79 16.26 -3.03 -0.05 -21.84 16 11 N -0.70 -18.79 5.56 -463.07 -2.57 -21.36 16 12 C 0.13 4.40 5.79 86.38 0.50 4.90 16 13 C 0.15 5.72 6.37 86.38 0.55 6.27 16 14 N -0.75 -38.33 5.60 -343.44 -1.92 -40.26 16 15 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 16 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 17 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 18 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 19 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.42 8.27 8.47 -92.71 -0.79 7.48 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.37 20.70 7.67 -92.71 -0.71 19.99 16 36 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -70.90 313.73 0.42 -70.48 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.42 Total: 28.42 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 4.66 Total: 5.53 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -4.21 Total: -121.54 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.63 Total: -30.74 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.90 0.42 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124141392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.026 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds