Wall clock time and date at job start Mon Mar 30 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42910 * 113.99696 * 2 1 4 4 C 1.53783 * 113.61124 * 150.00090 * 3 2 1 5 5 C 1.53785 * 87.07804 * 89.20104 * 4 3 2 6 6 C 1.50706 * 113.61049 * 139.97994 * 5 4 3 7 7 O 1.21274 * 120.00042 * 1.24953 * 6 5 4 8 8 N 1.34777 * 119.99766 * 181.52489 * 6 5 4 9 9 C 1.46496 * 120.00266 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47425 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.47030 * 180.02562 * 10 9 8 12 12 C 1.36934 * 120.00157 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.38815 * 120.00390 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99916 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99958 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47085 * 89.99619 * 16 14 12 18 18 H 1.48497 * 109.46789 * 209.99628 * 16 14 12 19 19 H 1.48500 * 109.46897 * 329.99595 * 16 14 12 20 20 C 1.53781 * 87.17620 * 25.38900 * 5 4 3 21 21 H 1.09003 * 109.47061 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47540 * 299.99583 * 1 2 3 23 23 H 1.08998 * 109.47518 * 59.99701 * 1 2 3 24 24 H 1.08994 * 112.85063 * 18.80958 * 3 2 1 25 25 H 1.08997 * 113.61737 * 334.65170 * 4 3 2 26 26 H 1.09000 * 113.61138 * 203.74311 * 4 3 2 27 27 H 1.09001 * 113.61445 * 270.79294 * 5 4 3 28 28 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 29 29 H 1.09004 * 109.47212 * 300.00463 * 9 8 6 30 30 H 1.09000 * 109.46684 * 60.00307 * 9 8 6 31 31 H 1.09000 * 109.46497 * 300.00014 * 10 9 8 32 32 H 1.08987 * 109.47025 * 60.00130 * 10 9 8 33 33 H 0.96999 * 120.00085 * 359.97438 * 11 10 9 34 34 H 0.97000 * 120.00284 * 180.02562 * 15 14 12 35 35 H 1.08998 * 113.61545 * 89.15547 * 20 5 4 36 36 H 1.08993 * 113.61303 * 220.06004 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.3755 1.3720 0.7045 5 6 4.0061 1.0354 -0.6571 6 6 5.2711 1.8032 -0.9427 7 8 5.7077 2.5801 -0.1202 8 7 5.9141 1.6305 -2.1145 9 6 7.1434 2.3772 -2.3925 10 6 7.6669 1.9997 -3.7798 11 7 8.8965 2.7460 -4.0574 12 6 9.5494 2.5713 -5.2484 13 1 9.1580 1.8829 -5.9828 14 6 10.7149 3.2780 -5.5113 15 7 11.1922 4.1165 -4.6161 16 14 11.6058 3.0390 -7.1357 17 1 11.0869 4.0099 -8.1324 18 1 13.0609 3.2610 -6.9395 19 1 11.3777 1.6561 -7.6265 20 6 2.7534 1.6497 -1.3036 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.3137 2.0789 0.3238 25 1 3.5175 0.5950 1.4556 26 1 3.6304 2.3669 1.0697 27 1 4.1106 -0.0345 -0.8373 28 1 5.5625 1.0123 -2.7742 29 1 6.9338 3.4465 -2.3622 30 1 7.8946 2.1328 -1.6415 31 1 7.8764 0.9304 -3.8103 32 1 6.9156 2.2443 -4.5305 33 1 9.2479 3.3645 -3.3980 34 1 12.0064 4.6106 -4.7999 35 1 2.8378 2.7206 -1.4883 36 1 2.3940 1.0966 -2.1713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130024872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:37 Heat of formation + Delta-G solvation = -77.174132 kcal Electronic energy + Delta-G solvation = -16852.782757 eV Core-core repulsion = 13951.070404 eV Total energy + Delta-G solvation = -2901.712353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43751 -39.55890 -37.37223 -36.47358 -35.48396 -33.15200 -29.86567 -27.86191 -26.76885 -26.61524 -25.25243 -23.11810 -21.97913 -20.41203 -19.33649 -18.60644 -17.22195 -16.98830 -16.75185 -16.53897 -16.15111 -15.96862 -15.49313 -15.18757 -15.02668 -14.67927 -14.35606 -13.46156 -13.25668 -13.06363 -13.05102 -12.88140 -12.66391 -12.52774 -12.30333 -12.09314 -11.87922 -11.67794 -11.42111 -11.00118 -10.79857 -10.44359 -10.14299 -9.08136 -7.97871 -5.29592 1.48051 1.50658 1.59014 1.59178 2.12782 2.57720 2.72612 3.36346 3.44834 3.59881 3.72570 3.86505 4.01611 4.14703 4.20213 4.30683 4.37019 4.57303 4.59061 4.62307 4.76186 4.83826 4.91062 5.00531 5.02474 5.08782 5.11886 5.20199 5.39692 5.48451 6.22942 6.29587 6.55202 7.23757 7.29025 8.00646 8.23855 9.25964 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.063603 B = 0.003312 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.127609 B = 8453.204874 C = 8765.239773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.070 3.930 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.517 3.483 7 O -0.588 6.588 8 N -0.710 5.710 9 C 0.126 3.874 10 C 0.149 3.851 11 N -0.748 5.748 12 C -0.249 4.249 13 H 0.083 0.917 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.981 3.019 17 H -0.285 1.285 18 H -0.296 1.296 19 H -0.265 1.265 20 C -0.134 4.134 21 H 0.097 0.903 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.417 0.583 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.374 0.626 34 H 0.253 0.747 35 H 0.092 0.908 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.473 -9.014 7.458 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C 0.012 3.988 4 C -0.160 4.160 5 C -0.146 4.146 6 C 0.305 3.695 7 O -0.468 6.468 8 N -0.362 5.362 9 C 0.001 3.999 10 C 0.023 3.977 11 N -0.391 5.391 12 C -0.380 4.380 13 H 0.101 0.899 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.809 3.191 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.190 1.190 20 C -0.172 4.172 21 H 0.115 0.885 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.150 0.850 28 H 0.253 0.747 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.205 0.795 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.033 -8.733 7.857 25.856 hybrid contribution 0.836 0.376 -0.740 1.178 sum -22.198 -8.357 7.116 24.763 Atomic orbital electron populations 1.23016 0.79297 1.03908 1.01007 1.87854 1.21526 1.26702 1.94604 1.23024 0.94307 0.85679 0.95761 1.23110 0.93946 1.03328 0.95607 1.22792 0.90292 1.01359 1.00181 1.21209 0.85643 0.82057 0.80625 1.90673 1.68830 1.39399 1.47912 1.45808 1.25813 1.45433 1.19162 1.21148 0.86238 0.95831 0.96662 1.20843 0.88267 0.95415 0.93207 1.42442 1.26867 1.50983 1.18847 1.19661 1.04247 1.19711 0.94423 0.89882 1.25696 0.99624 0.99579 1.02088 1.69839 1.24051 1.31613 1.36708 0.85040 0.77044 0.78210 0.78832 1.21192 1.22270 1.19004 1.23401 0.93121 1.01724 0.98952 0.88491 0.93023 0.92955 0.88651 0.90088 0.88810 0.85024 0.74652 0.92930 0.93089 0.94555 0.94401 0.79484 0.93861 0.88983 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.85 113.37 1.23 1.46 16 2 O -0.39 -6.22 10.63 -148.98 -1.58 -7.80 16 3 C 0.07 1.06 4.38 31.18 0.14 1.20 16 4 C -0.12 -2.35 7.23 31.12 0.23 -2.12 16 5 C -0.13 -2.46 4.08 -11.01 -0.04 -2.51 16 6 C 0.52 14.61 7.35 87.66 0.64 15.26 16 7 O -0.59 -22.04 15.91 -3.01 -0.05 -22.08 16 8 N -0.71 -19.14 5.56 -463.06 -2.57 -21.71 16 9 C 0.13 4.45 5.79 86.38 0.50 4.95 16 10 C 0.15 5.80 6.37 86.38 0.55 6.35 16 11 N -0.75 -38.64 5.60 -343.47 -1.92 -40.56 16 12 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 13 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 14 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 15 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 16 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 C -0.13 -2.08 7.47 31.18 0.23 -1.85 16 21 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.10 1.12 7.87 -2.39 -0.02 1.10 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.09 2.07 7.45 -2.39 -0.02 2.05 16 27 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.42 8.42 8.47 -92.71 -0.79 7.63 16 29 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 34 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -71.63 307.76 0.54 -71.08 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.42 Total: 27.66 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 4.78 Total: 5.65 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -4.21 Total: -122.47 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.63 Total: -29.89 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -71.63 0.54 -71.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130024872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.089 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds