Wall clock time and date at job start Mon Mar 30 2020 18:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47385 * 179.97438 * 3 2 1 5 5 C 1.50691 * 115.55166 * 294.85386 * 4 3 2 6 6 O 1.21284 * 119.99928 * 99.24708 * 5 4 3 7 7 N 1.34780 * 120.00053 * 278.96958 * 5 4 3 8 8 C 1.46499 * 119.99874 * 175.26576 * 7 5 4 9 9 C 1.53006 * 109.46751 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.46751 * 179.97438 * 9 8 7 11 11 C 1.36946 * 119.99932 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99727 * 0.02562 * 11 10 9 13 13 C 1.38812 * 119.99772 * 179.97438 * 11 10 9 14 14 N 1.31613 * 120.00162 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99491 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47053 * 60.00120 * 15 13 11 17 17 H 1.48504 * 109.47253 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47076 * 299.99949 * 15 13 11 19 19 C 1.53002 * 117.51573 * 80.55386 * 4 3 2 20 20 C 1.52994 * 60.00228 * 107.48005 * 19 4 3 21 21 H 1.08996 * 109.47092 * 59.99512 * 1 2 3 22 22 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46876 * 300.00138 * 1 2 3 24 24 H 1.09000 * 109.47064 * 59.99619 * 3 2 1 25 25 H 1.09004 * 109.46982 * 300.00276 * 3 2 1 26 26 H 0.96994 * 120.00063 * 355.26311 * 7 5 4 27 27 H 1.09004 * 109.47002 * 299.99639 * 8 7 5 28 28 H 1.09001 * 109.47567 * 60.00079 * 8 7 5 29 29 H 1.09004 * 109.46707 * 299.99371 * 9 8 7 30 30 H 1.08998 * 109.47589 * 60.00011 * 9 8 7 31 31 H 0.97000 * 120.00552 * 359.97438 * 10 9 8 32 32 H 0.97000 * 119.99867 * 180.02562 * 14 13 11 33 33 H 1.08998 * 117.49958 * 214.97176 * 19 4 3 34 34 H 1.09004 * 117.49878 * 359.97438 * 19 4 3 35 35 H 1.09004 * 117.50309 * 252.50912 * 20 19 4 36 36 H 1.09007 * 117.51748 * 107.47808 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1378 0.5638 1.2346 6 8 4.4603 -0.6053 1.2296 7 7 4.3233 1.3093 2.3421 8 6 4.8115 0.6832 3.5732 9 6 4.9325 1.7424 4.6707 10 7 5.4201 1.1161 5.9021 11 6 5.6085 1.8735 7.0273 12 1 5.3971 2.9325 7.0071 13 6 6.0700 1.2800 8.1942 14 7 6.3271 -0.0105 8.2190 15 14 6.3262 2.3131 9.7293 16 1 5.0380 2.9348 10.1282 17 1 6.8214 1.4488 10.8307 18 1 7.3236 3.3771 9.4491 19 6 4.2231 0.9065 -1.3376 20 6 4.3320 2.2905 -0.6946 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 4.1335 2.2603 2.3239 27 1 4.1111 -0.0896 3.8903 28 1 5.7884 0.2354 3.3906 29 1 5.6326 2.5154 4.3539 30 1 3.9554 2.1897 4.8533 31 1 5.6096 0.1650 5.9204 32 1 6.6492 -0.4253 9.0345 33 1 5.1111 0.2746 -1.3254 34 1 3.5888 0.8091 -2.2187 35 1 3.7695 3.1040 -1.1527 36 1 5.2916 2.5694 -0.2591 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131311417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:09:01 Heat of formation + Delta-G solvation = -45.482295 kcal Electronic energy + Delta-G solvation = -17127.593496 eV Core-core repulsion = 14227.255404 eV Total energy + Delta-G solvation = -2900.338091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12295 -37.99767 -36.45935 -35.54171 -33.75972 -31.18097 -28.64786 -27.78996 -25.87545 -24.13571 -22.78451 -22.48193 -21.38192 -19.46271 -17.46755 -17.11309 -16.40293 -16.06477 -15.76491 -15.36935 -14.90057 -14.54978 -14.40795 -13.84081 -13.31665 -13.16822 -12.88258 -12.71104 -12.37427 -11.83852 -11.63978 -11.40426 -11.08999 -10.88755 -10.82443 -10.78241 -10.49497 -10.13504 -9.91258 -9.79795 -9.53677 -8.95672 -8.77553 -6.98471 -5.78396 -3.09261 2.74579 3.04450 3.29704 3.43319 3.47636 3.49104 3.80499 4.40598 4.55529 4.61952 4.67720 4.83022 4.99658 5.11665 5.18105 5.32541 5.33677 5.46873 5.48653 5.51423 5.63811 5.66657 5.80772 5.86854 5.98891 6.17983 6.52929 6.72463 6.78701 6.92316 7.65944 7.69535 8.38587 8.41651 9.50286 10.05350 10.40196 11.44151 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.003965 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.757294 B = 7060.152883 C = 7278.189963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.107 3.893 4 C -0.159 4.159 5 C 0.551 3.449 6 O -0.528 6.528 7 N -0.721 5.721 8 C 0.111 3.889 9 C 0.146 3.854 10 N -0.730 5.730 11 C -0.245 4.245 12 H 0.071 0.929 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.910 3.090 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.285 1.285 19 C -0.136 4.136 20 C -0.156 4.156 21 H 0.040 0.960 22 H 0.087 0.913 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.399 0.601 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.386 0.614 32 H 0.257 0.743 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 5.895 -19.870 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.030 3.970 4 C -0.163 4.163 5 C 0.335 3.665 6 O -0.403 6.403 7 N -0.372 5.372 8 C -0.013 4.013 9 C 0.017 3.983 10 N -0.375 5.375 11 C -0.376 4.376 12 H 0.089 0.911 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.741 3.259 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.174 4.174 20 C -0.193 4.193 21 H 0.058 0.942 22 H 0.106 0.894 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.233 0.767 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.220 0.780 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.036 4.981 -19.713 22.250 hybrid contribution -0.169 0.914 0.977 1.349 sum -9.205 5.895 -18.736 21.692 Atomic orbital electron populations 1.22763 0.80955 1.03027 0.99830 1.88023 1.19509 1.26957 1.95318 1.21837 0.89008 0.85399 1.00776 1.21333 0.94065 1.06459 0.94420 1.19252 0.77957 0.86201 0.83062 1.90707 1.49787 1.16528 1.83298 1.45886 1.67717 1.12279 1.11343 1.21583 0.99918 0.96778 0.82978 1.20749 0.97166 0.93683 0.86666 1.42191 1.79571 1.09162 1.06554 1.19152 1.37607 0.92154 0.88723 0.91097 1.24776 1.01906 0.95938 0.98139 1.69658 1.51150 1.09245 1.27816 0.86225 0.77891 0.79018 0.82758 1.21194 1.21597 1.21189 1.22943 1.02521 0.97998 0.93890 1.23151 1.01356 0.92416 1.02406 0.94176 0.89442 0.93944 0.92360 0.92298 0.76750 0.91370 0.91265 0.95813 0.95860 0.77988 0.93299 0.87793 0.87780 0.87667 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.86 10.63 -35.23 -0.37 -5.23 16 3 C 0.11 1.09 5.76 37.16 0.21 1.30 16 4 C -0.16 -1.82 2.13 -155.66 -0.33 -2.15 16 5 C 0.55 8.64 6.91 -10.99 -0.08 8.56 16 6 O -0.53 -10.71 17.01 5.55 0.09 -10.62 16 7 N -0.72 -10.51 5.55 -60.29 -0.33 -10.84 16 8 C 0.11 2.00 5.79 -4.04 -0.02 1.98 16 9 C 0.15 2.91 6.37 -4.04 -0.03 2.89 16 10 N -0.73 -18.86 5.60 -59.90 -0.34 -19.20 16 11 C -0.25 -6.92 9.99 -15.05 -0.15 -7.07 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 15 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.14 -1.35 9.88 -26.73 -0.26 -1.61 16 20 C -0.16 -1.26 9.92 -26.73 -0.27 -1.52 16 21 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.40 4.59 8.48 -40.82 -0.35 4.24 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.39 10.59 7.67 -40.82 -0.31 10.27 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -34.70 314.10 -6.12 -40.82 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.70 Total: 7.42 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.09 Total: 3.33 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.05 Total: -57.82 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.28 Total: -15.85 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.70 -6.12 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131311417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.662 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds