Wall clock time and date at job start Mon Mar 30 2020 18:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47385 * 179.97438 * 3 2 1 5 5 C 1.50691 * 115.55166 * 294.85386 * 4 3 2 6 6 O 1.21284 * 119.99928 * 99.24708 * 5 4 3 7 7 N 1.34780 * 120.00053 * 278.96958 * 5 4 3 8 8 C 1.46499 * 119.99874 * 175.26576 * 7 5 4 9 9 C 1.53006 * 109.46751 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.46751 * 179.97438 * 9 8 7 11 11 C 1.36946 * 119.99932 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99727 * 0.02562 * 11 10 9 13 13 C 1.38812 * 119.99772 * 179.97438 * 11 10 9 14 14 N 1.31613 * 120.00162 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99491 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47053 * 60.00120 * 15 13 11 17 17 H 1.48504 * 109.47253 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47076 * 299.99949 * 15 13 11 19 19 C 1.53002 * 117.51573 * 80.55386 * 4 3 2 20 20 C 1.52994 * 60.00228 * 107.48005 * 19 4 3 21 21 H 1.08996 * 109.47092 * 59.99512 * 1 2 3 22 22 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46876 * 300.00138 * 1 2 3 24 24 H 1.09000 * 109.47064 * 59.99619 * 3 2 1 25 25 H 1.09004 * 109.46982 * 300.00276 * 3 2 1 26 26 H 0.96994 * 120.00063 * 355.26311 * 7 5 4 27 27 H 1.09004 * 109.47002 * 299.99639 * 8 7 5 28 28 H 1.09001 * 109.47567 * 60.00079 * 8 7 5 29 29 H 1.09004 * 109.46707 * 299.99371 * 9 8 7 30 30 H 1.08998 * 109.47589 * 60.00011 * 9 8 7 31 31 H 0.97000 * 120.00552 * 359.97438 * 10 9 8 32 32 H 0.97000 * 119.99867 * 180.02562 * 14 13 11 33 33 H 1.08998 * 117.49958 * 214.97176 * 19 4 3 34 34 H 1.09004 * 117.49878 * 359.97438 * 19 4 3 35 35 H 1.09004 * 117.50309 * 252.50912 * 20 19 4 36 36 H 1.09007 * 117.51748 * 107.47808 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1378 0.5638 1.2346 6 8 4.4603 -0.6053 1.2296 7 7 4.3233 1.3093 2.3421 8 6 4.8115 0.6832 3.5732 9 6 4.9325 1.7424 4.6707 10 7 5.4201 1.1161 5.9021 11 6 5.6085 1.8735 7.0273 12 1 5.3971 2.9325 7.0071 13 6 6.0700 1.2800 8.1942 14 7 6.3271 -0.0105 8.2190 15 14 6.3262 2.3131 9.7293 16 1 5.0380 2.9348 10.1282 17 1 6.8214 1.4488 10.8307 18 1 7.3236 3.3771 9.4491 19 6 4.2231 0.9065 -1.3376 20 6 4.3320 2.2905 -0.6946 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 4.1335 2.2603 2.3239 27 1 4.1111 -0.0896 3.8903 28 1 5.7884 0.2354 3.3906 29 1 5.6326 2.5154 4.3539 30 1 3.9554 2.1897 4.8533 31 1 5.6096 0.1650 5.9204 32 1 6.6492 -0.4253 9.0345 33 1 5.1111 0.2746 -1.3254 34 1 3.5888 0.8091 -2.2187 35 1 3.7695 3.1040 -1.1527 36 1 5.2916 2.5694 -0.2591 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131311417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:09:00 Heat of formation + Delta-G solvation = -72.512096 kcal Electronic energy + Delta-G solvation = -17128.765596 eV Core-core repulsion = 14227.255404 eV Total energy + Delta-G solvation = -2901.510192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23339 -38.94463 -37.50261 -37.04976 -35.49366 -33.13295 -29.78055 -29.09777 -26.67607 -25.85220 -24.06607 -23.37102 -22.91402 -20.63239 -19.31644 -18.27540 -17.24567 -17.09548 -16.95219 -16.52763 -16.38806 -16.15908 -15.47667 -15.11993 -15.03914 -14.83878 -14.38413 -13.36757 -13.29740 -13.08433 -13.05021 -12.64105 -12.57386 -12.49813 -12.32992 -12.13383 -11.88662 -11.65281 -11.27238 -10.98606 -10.87045 -10.57061 -10.18736 -9.08188 -7.97124 -5.29279 1.48280 1.52396 1.53950 1.58560 2.00988 2.39543 2.57854 3.08130 3.36952 3.60689 3.69347 3.92112 3.98107 4.03608 4.16313 4.18929 4.36359 4.48771 4.52461 4.54875 4.63619 4.73230 4.81100 4.85384 4.96642 5.01387 5.10139 5.18750 5.35216 5.47862 6.22673 6.23010 6.52567 7.20935 7.29195 8.00420 8.23921 9.26479 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.003965 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.757294 B = 7060.152883 C = 7278.189963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.105 3.895 4 C -0.179 4.179 5 C 0.546 3.454 6 O -0.584 6.584 7 N -0.707 5.707 8 C 0.127 3.873 9 C 0.151 3.849 10 N -0.748 5.748 11 C -0.252 4.252 12 H 0.084 0.916 13 C -0.076 4.076 14 N -0.972 5.972 15 Si 0.981 3.019 16 H -0.274 1.274 17 H -0.297 1.297 18 H -0.274 1.274 19 C -0.145 4.145 20 C -0.121 4.121 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.417 0.583 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.373 0.627 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.370 8.737 -21.048 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.028 3.972 4 C -0.182 4.182 5 C 0.333 3.667 6 O -0.463 6.463 7 N -0.359 5.359 8 C 0.003 3.997 9 C 0.025 3.975 10 N -0.392 5.392 11 C -0.383 4.383 12 H 0.102 0.898 13 C -0.268 4.268 14 N -0.622 5.622 15 Si 0.809 3.191 16 H -0.200 1.200 17 H -0.223 1.223 18 H -0.200 1.200 19 C -0.183 4.183 20 C -0.158 4.158 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.254 0.746 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.205 0.795 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.050 7.906 -20.931 24.528 hybrid contribution 0.113 0.031 1.258 1.263 sum -9.937 7.937 -19.674 23.426 Atomic orbital electron populations 1.22911 0.79346 1.03547 1.01177 1.87974 1.21503 1.28889 1.95635 1.22028 0.87680 0.84750 1.02697 1.21338 0.95189 1.09154 0.92538 1.20123 0.76761 0.85588 0.84213 1.90676 1.52148 1.19129 1.84383 1.45703 1.67039 1.13134 1.10022 1.21152 0.98627 0.95951 0.84016 1.20831 0.97705 0.93957 0.85047 1.42439 1.79950 1.08698 1.08068 1.19636 1.36296 0.92906 0.89449 0.89793 1.25694 1.02459 0.97118 1.01551 1.69838 1.52831 1.11169 1.28343 0.85107 0.78207 0.77362 0.78417 1.20023 1.22301 1.20014 1.23037 1.01951 0.99431 0.93835 1.23326 1.00843 0.92061 0.99595 0.91775 0.89523 0.93538 0.91811 0.88790 0.74574 0.93336 0.93050 0.94241 0.94400 0.79547 0.93873 0.89942 0.85794 0.83940 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.31 10.63 -148.98 -1.58 -11.89 16 3 C 0.10 1.86 5.76 71.98 0.41 2.27 16 4 C -0.18 -3.75 2.13 -52.93 -0.11 -3.86 16 5 C 0.55 17.07 6.91 87.65 0.61 17.68 16 6 O -0.58 -24.63 17.01 -3.04 -0.05 -24.69 16 7 N -0.71 -20.06 5.55 -463.05 -2.57 -22.63 16 8 C 0.13 4.65 5.79 86.38 0.50 5.15 16 9 C 0.15 5.92 6.37 86.38 0.55 6.47 16 10 N -0.75 -38.88 5.60 -343.43 -1.92 -40.80 16 11 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 12 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 13 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 14 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 15 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 C -0.15 -2.62 9.88 30.59 0.30 -2.31 16 20 C -0.12 -1.53 9.92 30.59 0.30 -1.22 16 21 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 26 H 0.42 8.68 8.48 -92.71 -0.79 7.90 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.37 21.05 7.67 -92.71 -0.71 20.34 16 32 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.12 1.70 8.14 -2.38 -0.02 1.69 16 35 H 0.14 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -76.83 314.10 0.88 -75.95 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.42 Total: 27.80 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.12 Total: 8.72 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -4.21 Total: -123.76 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.64 Total: -36.58 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -76.83 0.88 -75.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131311417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.441 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds