Wall clock time and date at job start Mon Mar 30 2020 18:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39907 * 119.97298 * 56.20032 * 3 2 1 5 5 C 1.36505 * 120.02915 * 180.02562 * 4 3 2 6 6 C 1.40162 * 119.97393 * 359.97438 * 5 4 3 7 7 C 1.46894 * 120.03650 * 180.02562 * 6 5 4 8 8 N 1.30498 * 120.00661 * 180.02562 * 7 6 5 9 9 N 1.40093 * 120.00468 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00211 * 179.97438 * 9 8 7 11 11 O 1.21903 * 119.99852 * 0.02562 * 10 9 8 12 12 C 1.41064 * 119.99889 * 180.02562 * 10 9 8 13 13 H 1.07996 * 120.00352 * 0.02562 * 12 10 9 14 14 C 1.40227 * 119.99638 * 180.02562 * 12 10 9 15 15 N 1.30594 * 120.00125 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00061 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47213 * 59.99498 * 16 14 12 18 18 H 1.48502 * 109.47529 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47003 * 299.99925 * 16 14 12 20 20 C 1.40174 * 119.93614 * 359.97438 * 6 5 4 21 21 C 1.36501 * 119.96840 * 0.04423 * 20 6 5 22 22 H 1.07998 * 119.98663 * 0.02562 * 4 3 2 23 23 H 1.08001 * 120.01529 * 179.72975 * 5 4 3 24 24 H 1.08005 * 119.99578 * 0.02562 * 7 6 5 25 25 H 0.97008 * 119.99633 * 0.02562 * 9 8 7 26 26 H 0.96993 * 119.99810 * 180.02562 * 15 14 12 27 27 H 1.07995 * 120.01140 * 180.02562 * 20 6 5 28 28 H 1.07995 * 119.98220 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 -0.6733 -1.0071 5 6 4.6324 -0.6738 -1.0079 6 6 5.3335 0.0015 0.0004 7 6 6.8024 0.0023 0.0006 8 7 7.4547 0.6308 0.9400 9 7 8.8556 0.6311 0.9404 10 6 9.5291 1.2807 1.9103 11 8 8.9193 1.8677 2.7876 12 6 10.9398 1.2813 1.9103 13 1 11.4801 0.7617 1.1329 14 6 11.6405 1.9568 2.9199 15 7 10.9872 2.5856 3.8596 16 14 13.5085 1.9583 2.9196 17 1 14.0028 2.5776 1.6636 18 1 14.0031 2.7373 4.0831 19 1 14.0046 0.5616 3.0114 20 6 4.6316 0.6772 1.0083 21 6 3.2666 0.6758 1.0069 22 1 2.7269 -1.1932 -1.7843 23 1 5.1719 -1.1978 -1.7830 24 1 7.3427 -0.5174 -0.7769 25 1 9.3409 0.1643 0.2420 26 1 11.4719 3.0531 4.5577 27 1 5.1706 1.1983 1.7856 28 1 2.7256 1.1960 1.7835 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000573909.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:00 Heat of formation + Delta-G solvation = 55.636894 kcal Electronic energy + Delta-G solvation = -15161.893506 eV Core-core repulsion = 12371.990186 eV Total energy + Delta-G solvation = -2789.903320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.075 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.49831 -37.74786 -36.57904 -35.28540 -32.82359 -32.10306 -31.30878 -29.70936 -26.77846 -24.56596 -22.69271 -21.10950 -19.85262 -18.96113 -17.76890 -16.46657 -15.81471 -15.44361 -14.80383 -14.52953 -14.12790 -14.10558 -13.58272 -13.43532 -13.12305 -12.85282 -12.70634 -12.52721 -11.80202 -11.48504 -11.40001 -11.10366 -10.96286 -10.74012 -10.47494 -9.69846 -9.21520 -9.15904 -8.92979 -7.88894 -7.46669 -6.48358 -5.04029 0.46828 1.38142 2.38244 2.58252 3.01282 3.05899 3.08716 3.19012 3.54599 3.83697 3.95550 4.00361 4.36229 4.76083 4.80233 4.94263 5.27845 5.45264 5.63085 5.64895 5.77577 5.91966 6.15159 6.28101 6.41289 6.66883 6.78943 7.12933 7.39849 7.69620 7.88670 8.48659 8.67781 9.15266 10.30250 10.52000 Molecular weight = 243.07amu Principal moments of inertia in cm(-1) A = 0.070730 B = 0.003646 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.778552 B = 7678.715399 C = 8064.651861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.263 3.737 3 C -0.048 4.048 4 C -0.068 4.068 5 C -0.114 4.114 6 C 0.021 3.979 7 C 0.000 4.000 8 N -0.174 5.174 9 N -0.582 5.582 10 C 0.555 3.445 11 O -0.550 6.550 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.744 5.744 16 Si 0.918 3.082 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.099 4.099 21 C -0.065 4.065 22 H 0.131 0.869 23 H 0.135 0.865 24 H 0.112 0.888 25 H 0.371 0.629 26 H 0.276 0.724 27 H 0.147 0.853 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -6.054 -9.042 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.052 4.052 3 C -0.053 4.053 4 C -0.088 4.088 5 C -0.135 4.135 6 C 0.017 3.983 7 C -0.208 4.208 8 N 0.015 4.985 9 N -0.328 5.328 10 C 0.364 3.636 11 O -0.429 6.429 12 C -0.572 4.572 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.370 5.370 16 Si 0.742 3.258 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.119 4.119 21 C -0.086 4.086 22 H 0.148 0.852 23 H 0.153 0.847 24 H 0.129 0.871 25 H 0.207 0.793 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.667 -4.915 -7.340 12.375 hybrid contribution 1.874 -0.761 -1.140 2.321 sum -6.793 -5.677 -8.479 12.258 Atomic orbital electron populations 1.81231 1.12225 1.09129 1.08344 1.25822 0.92751 0.93281 0.93348 1.16135 0.84017 1.05411 0.99759 1.20709 0.94103 0.97269 0.96764 1.20878 0.93451 1.00345 0.98793 1.18810 0.90993 0.94626 0.93830 1.23931 0.93003 1.04735 0.99100 1.74708 0.95666 1.09594 1.18526 1.48220 0.98205 1.55440 1.30970 1.16939 0.87646 0.79130 0.79910 1.90713 1.69332 1.46132 1.36762 1.19796 0.89783 1.35141 1.12467 0.90997 1.25774 1.00759 0.93117 0.93981 1.69981 1.37433 1.21110 1.08526 0.86246 0.81600 0.79271 0.78673 1.18946 1.20186 1.18941 1.21286 0.93257 0.98499 0.98875 1.20882 0.94342 0.96722 0.96609 0.85159 0.84717 0.87106 0.79287 0.91280 0.83528 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.98 18.54 41.84 0.78 -5.20 15 2 C 0.26 3.07 15.32 -22.47 -0.34 2.73 15 3 C -0.05 -0.50 5.75 -106.72 -0.61 -1.12 15 4 C -0.07 -0.60 9.69 -39.58 -0.38 -0.98 15 5 C -0.11 -1.07 9.74 -39.49 -0.38 -1.45 15 6 C 0.02 0.26 5.88 -104.95 -0.62 -0.36 15 7 C 0.00 0.00 10.75 -14.62 -0.16 -0.16 15 8 N -0.17 -3.54 10.17 32.14 0.33 -3.21 15 9 N -0.58 -12.94 6.26 28.99 0.18 -12.76 15 10 C 0.55 15.36 7.67 -15.19 -0.12 15.25 15 11 O -0.55 -17.60 15.20 5.01 0.08 -17.53 15 12 C -0.54 -14.16 9.28 -37.76 -0.35 -14.51 15 13 H 0.07 1.68 7.85 -52.49 -0.41 1.27 15 14 C 0.09 2.29 5.50 -17.33 -0.10 2.19 15 15 N -0.74 -21.04 11.72 55.56 0.65 -20.39 15 16 Si 0.92 18.61 29.56 -169.99 -5.02 13.58 15 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 18 H -0.28 -5.49 7.11 56.52 0.40 -5.08 15 19 H -0.26 -5.21 7.11 56.52 0.40 -4.80 15 20 C -0.10 -1.30 9.52 -39.48 -0.38 -1.68 15 21 C -0.07 -0.72 9.69 -39.58 -0.38 -1.10 15 22 H 0.13 0.85 8.06 -52.49 -0.42 0.43 15 23 H 0.13 0.91 8.06 -52.49 -0.42 0.48 15 24 H 0.11 1.32 8.03 -52.48 -0.42 0.90 15 25 H 0.37 6.80 8.61 -182.59 -1.57 5.23 15 26 H 0.28 7.01 8.29 -40.82 -0.34 6.67 15 27 H 0.15 2.24 7.54 -52.49 -0.40 1.84 15 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 15 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -33.69 276.04 -5.88 -39.57 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.20 Total: 2.95 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -3.82 Total: -1.18 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 1.93 Total: -41.56 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.08 Total: -17.53 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.69 -5.88 -39.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000573909.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.203 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds