Wall clock time and date at job start Mon Mar 30 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48499 * 109.47336 * 90.00026 * 3 2 1 5 5 H 1.48495 * 109.47296 * 210.00643 * 3 2 1 6 6 H 1.48507 * 109.47028 * 330.00506 * 3 2 1 7 7 C 1.39965 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00205 * 21.16460 * 7 2 1 9 9 C 1.41049 * 119.99921 * 201.15836 * 7 2 1 10 10 C 1.40744 * 120.30202 * 26.66813 * 9 7 2 11 11 C 1.36450 * 119.94390 * 179.97438 * 10 9 7 12 12 C 1.38884 * 120.58912 * 359.97438 * 11 10 9 13 13 C 1.38193 * 120.62048 * 0.02562 * 12 11 10 14 14 C 1.38701 * 120.03035 * 359.71720 * 13 12 11 15 15 N 1.38985 * 120.28726 * 180.27876 * 14 13 12 16 16 C 1.34776 * 120.00320 * 19.42186 * 15 14 13 17 17 O 1.21626 * 119.99590 * 5.72700 * 16 15 14 18 18 C 1.47035 * 120.00094 * 185.72287 * 16 15 14 19 19 C 1.31999 * 133.05782 * 179.97438 * 18 16 15 20 20 C 1.49904 * 93.88659 * 179.97438 * 19 18 16 21 21 C 1.49898 * 133.05587 * 359.65764 * 18 16 15 22 22 H 0.96995 * 119.99769 * 174.93741 * 1 2 3 23 23 H 1.08004 * 120.02474 * 359.97438 * 10 9 7 24 24 H 1.08007 * 119.70552 * 179.97438 * 11 10 9 25 25 H 1.07997 * 119.68863 * 179.97438 * 12 11 10 26 26 H 1.08000 * 119.98557 * 179.97438 * 13 12 11 27 27 H 0.96999 * 119.99470 * 199.42314 * 15 14 13 28 28 H 1.08004 * 133.05447 * 359.94403 * 19 18 16 29 29 H 1.08996 * 113.76324 * 114.30582 * 20 19 18 30 30 H 1.08999 * 113.76767 * 245.70453 * 20 19 18 31 31 H 1.09004 * 113.77043 * 294.33001 * 21 18 16 32 32 H 1.08996 * 113.77577 * 65.72677 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0464 1.4000 5 1 3.5400 1.4401 -0.7001 6 1 1.4400 2.6527 -0.7000 7 6 2.0083 -1.2122 -0.0005 8 1 1.5229 -2.1158 -0.3386 9 6 3.3475 -1.2536 0.4403 10 6 3.8196 -0.3056 1.3673 11 6 5.1163 -0.3528 1.7893 12 6 5.9796 -1.3307 1.3125 13 6 5.5413 -2.2732 0.4018 14 6 4.2268 -2.2525 -0.0404 15 7 3.7788 -3.2013 -0.9517 16 6 4.4601 -4.3526 -1.1158 17 8 5.4057 -4.6076 -0.3946 18 6 4.0603 -5.3001 -2.1666 19 6 4.5299 -6.4731 -2.5486 20 6 3.5118 -6.6410 -3.6359 21 6 2.9666 -5.2899 -3.1917 22 1 -0.4849 -0.8367 -0.0741 23 1 3.1559 0.4586 1.7444 24 1 5.4746 0.3769 2.5005 25 1 7.0032 -1.3542 1.6560 26 1 6.2214 -3.0289 0.0375 27 1 2.9757 -3.0350 -1.4697 28 1 5.3488 -7.0873 -2.2039 29 1 3.9367 -6.6385 -4.6397 30 1 2.8208 -7.4669 -3.4671 31 1 1.9645 -5.3390 -2.7655 32 1 3.0736 -4.5052 -3.9406 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335323141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:01 Heat of formation + Delta-G solvation = 34.761696 kcal Electronic energy + Delta-G solvation = -16697.472670 eV Core-core repulsion = 14010.204477 eV Total energy + Delta-G solvation = -2687.268193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15620 -38.66699 -37.09158 -33.93248 -33.75288 -30.25447 -29.03020 -26.63996 -25.38295 -24.59512 -22.40103 -21.09766 -19.90417 -18.30812 -17.88849 -16.76556 -16.43199 -15.59967 -15.10548 -14.49009 -14.22283 -14.06490 -13.40536 -13.20634 -12.76590 -12.54350 -12.19560 -11.78880 -11.68768 -11.59737 -11.08003 -10.89239 -10.78065 -10.51250 -9.88480 -9.70706 -9.47282 -9.18119 -9.11421 -8.79524 -7.76404 -7.39187 -7.00347 -4.56144 1.41920 2.59356 2.71771 3.17912 3.31758 3.51192 3.75917 3.87314 3.97306 4.41554 4.52465 4.61783 4.98008 5.07146 5.39036 5.43928 5.49626 5.73618 5.97864 6.00811 6.11119 6.23112 6.39345 6.67981 6.72944 6.81430 7.02736 7.33920 7.35815 7.50277 7.67427 7.83665 7.91578 8.22644 8.35058 8.47343 8.67986 8.86773 9.92739 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.024075 B = 0.007752 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.745605 B = 3610.898243 C = 4574.752605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.046 3.954 3 Si 1.075 2.925 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.290 1.290 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.086 3.914 10 C -0.234 4.234 11 C -0.087 4.087 12 C -0.230 4.230 13 C -0.092 4.092 14 C 0.022 3.978 15 N -0.625 5.625 16 C 0.551 3.449 17 O -0.539 6.539 18 C -0.193 4.193 19 C -0.099 4.099 20 C -0.115 4.115 21 C -0.105 4.105 22 H 0.286 0.714 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.131 0.869 27 H 0.407 0.593 28 H 0.144 0.856 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -6.464 -6.576 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.174 4.174 3 Si 0.901 3.099 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.218 1.218 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.253 4.253 11 C -0.106 4.106 12 C -0.250 4.250 13 C -0.112 4.112 14 C -0.072 4.072 15 N -0.265 5.265 16 C 0.340 3.660 17 O -0.419 6.419 18 C -0.196 4.196 19 C -0.118 4.118 20 C -0.152 4.152 21 C -0.142 4.142 22 H 0.097 0.903 23 H 0.126 0.874 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.148 0.852 27 H 0.243 0.757 28 H 0.162 0.838 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.681 -5.048 -6.071 8.712 hybrid contribution -0.384 -1.711 -0.115 1.757 sum 3.297 -6.760 -6.186 9.738 Atomic orbital electron populations 1.70568 1.08073 1.33116 1.31653 1.27265 0.95526 1.04478 0.90105 0.83573 0.75520 0.72896 0.77935 1.20204 1.18764 1.21773 1.20373 0.96605 0.97072 1.41184 0.90739 1.17492 0.92234 0.91362 0.90737 1.20703 0.96521 1.04227 1.03874 1.20398 0.94059 0.97378 0.98753 1.20352 0.98776 1.00153 1.05693 1.21183 0.94018 0.98527 0.97456 1.17752 0.93195 0.96604 0.99684 1.42808 1.28269 1.15952 1.39462 1.17682 0.83499 0.81125 0.83658 1.90664 1.29243 1.76077 1.45938 1.22792 1.00709 0.97470 0.98664 1.24757 0.97221 0.94887 0.94960 1.21758 0.96975 0.98154 0.98322 1.21732 0.97930 0.97959 0.96625 0.90282 0.87351 0.88738 0.88592 0.85191 0.75698 0.83798 0.88993 0.89059 0.89243 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.03 13.66 55.55 0.76 -20.27 16 2 C 0.05 1.17 5.38 -17.32 -0.09 1.08 16 3 Si 1.07 23.81 25.01 -169.99 -4.25 19.56 16 4 H -0.28 -5.85 6.37 56.52 0.36 -5.49 16 5 H -0.26 -5.83 7.10 56.52 0.40 -5.43 16 6 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -13.44 8.75 -37.87 -0.33 -13.77 16 8 H 0.07 1.91 7.21 -52.48 -0.38 1.53 16 9 C 0.09 2.19 5.17 -106.64 -0.55 1.64 16 10 C -0.23 -5.70 7.33 -39.28 -0.29 -5.98 16 11 C -0.09 -1.96 9.96 -39.99 -0.40 -2.35 16 12 C -0.23 -5.17 10.04 -39.36 -0.39 -5.57 16 13 C -0.09 -2.19 8.78 -39.43 -0.35 -2.54 16 14 C 0.02 0.53 6.53 -83.21 -0.54 -0.01 16 15 N -0.63 -13.27 5.17 -10.56 -0.05 -13.33 16 16 C 0.55 11.12 7.64 -12.70 -0.10 11.02 16 17 O -0.54 -12.42 13.97 5.25 0.07 -12.35 16 18 C -0.19 -2.98 6.84 -105.44 -0.72 -3.70 16 19 C -0.10 -1.25 12.10 -38.69 -0.47 -1.71 16 20 C -0.12 -1.11 8.22 -30.69 -0.25 -1.36 16 21 C -0.11 -1.24 8.05 -30.70 -0.25 -1.48 16 22 H 0.29 7.18 8.73 -40.82 -0.36 6.82 16 23 H 0.11 2.59 4.36 -52.48 -0.23 2.36 16 24 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 25 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 26 H 0.13 3.11 5.40 -52.49 -0.28 2.82 16 27 H 0.41 7.95 7.17 -40.82 -0.29 7.66 16 28 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 272.78 15.07 4.11 4.11 Total: -1.00 -29.27 272.78 -7.43 -36.70 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -3.34 Total: 10.32 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -4.73 Total: -24.75 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.70 Total: -33.59 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.25 Total: 19.56 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.27 -7.43 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335323141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.463 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds