Wall clock time and date at job start Mon Mar 30 2020 18:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48499 * 109.47336 * 90.00026 * 3 2 1 5 5 H 1.48495 * 109.47296 * 210.00643 * 3 2 1 6 6 H 1.48507 * 109.47028 * 330.00506 * 3 2 1 7 7 C 1.39965 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00205 * 21.16460 * 7 2 1 9 9 C 1.41049 * 119.99921 * 201.15836 * 7 2 1 10 10 C 1.40744 * 120.30202 * 26.66813 * 9 7 2 11 11 C 1.36450 * 119.94390 * 179.97438 * 10 9 7 12 12 C 1.38884 * 120.58912 * 359.97438 * 11 10 9 13 13 C 1.38193 * 120.62048 * 0.02562 * 12 11 10 14 14 C 1.38701 * 120.03035 * 359.71720 * 13 12 11 15 15 N 1.38985 * 120.28726 * 180.27876 * 14 13 12 16 16 C 1.34776 * 120.00320 * 19.42186 * 15 14 13 17 17 O 1.21626 * 119.99590 * 5.72700 * 16 15 14 18 18 C 1.47035 * 120.00094 * 185.72287 * 16 15 14 19 19 C 1.31999 * 133.05782 * 179.97438 * 18 16 15 20 20 C 1.49904 * 93.88659 * 179.97438 * 19 18 16 21 21 C 1.49898 * 133.05587 * 359.65764 * 18 16 15 22 22 H 0.96995 * 119.99769 * 174.93741 * 1 2 3 23 23 H 1.08004 * 120.02474 * 359.97438 * 10 9 7 24 24 H 1.08007 * 119.70552 * 179.97438 * 11 10 9 25 25 H 1.07997 * 119.68863 * 179.97438 * 12 11 10 26 26 H 1.08000 * 119.98557 * 179.97438 * 13 12 11 27 27 H 0.96999 * 119.99470 * 199.42314 * 15 14 13 28 28 H 1.08004 * 133.05447 * 359.94403 * 19 18 16 29 29 H 1.08996 * 113.76324 * 114.30582 * 20 19 18 30 30 H 1.08999 * 113.76767 * 245.70453 * 20 19 18 31 31 H 1.09004 * 113.77043 * 294.33001 * 21 18 16 32 32 H 1.08996 * 113.77577 * 65.72677 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0464 1.4000 5 1 3.5400 1.4401 -0.7001 6 1 1.4400 2.6527 -0.7000 7 6 2.0083 -1.2122 -0.0005 8 1 1.5229 -2.1158 -0.3386 9 6 3.3475 -1.2536 0.4403 10 6 3.8196 -0.3056 1.3673 11 6 5.1163 -0.3528 1.7893 12 6 5.9796 -1.3307 1.3125 13 6 5.5413 -2.2732 0.4018 14 6 4.2268 -2.2525 -0.0404 15 7 3.7788 -3.2013 -0.9517 16 6 4.4601 -4.3526 -1.1158 17 8 5.4057 -4.6076 -0.3946 18 6 4.0603 -5.3001 -2.1666 19 6 4.5299 -6.4731 -2.5486 20 6 3.5118 -6.6410 -3.6359 21 6 2.9666 -5.2899 -3.1917 22 1 -0.4849 -0.8367 -0.0741 23 1 3.1559 0.4586 1.7444 24 1 5.4746 0.3769 2.5005 25 1 7.0032 -1.3542 1.6560 26 1 6.2214 -3.0289 0.0375 27 1 2.9757 -3.0350 -1.4697 28 1 5.3488 -7.0873 -2.2039 29 1 3.9367 -6.6385 -4.6397 30 1 2.8208 -7.4669 -3.4671 31 1 1.9645 -5.3390 -2.7655 32 1 3.0736 -4.5052 -3.9406 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335323141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:00 Heat of formation + Delta-G solvation = 17.216227 kcal Electronic energy + Delta-G solvation = -16698.233499 eV Core-core repulsion = 14010.204477 eV Total energy + Delta-G solvation = -2688.029022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60912 -40.01435 -38.73975 -35.71428 -35.58296 -32.13587 -30.74223 -27.85547 -26.74195 -26.08183 -24.03285 -22.71476 -21.60148 -20.17327 -19.39361 -18.23942 -17.80929 -16.86645 -16.57167 -16.22912 -15.80491 -15.68925 -15.09520 -14.72553 -14.46148 -14.08433 -13.92685 -13.49142 -13.05183 -12.69498 -12.48473 -12.39533 -12.27422 -11.97120 -11.70417 -11.47633 -11.24969 -10.94027 -10.50563 -10.23713 -9.67123 -9.31970 -8.82456 -6.51553 0.15013 0.80411 0.89199 1.39717 1.56009 1.78253 2.17506 2.25649 2.35194 2.63576 3.45088 3.49854 3.72405 3.78150 4.29453 4.32091 4.36168 4.46831 4.58933 4.67611 4.84188 4.95074 4.97154 5.04025 5.21900 5.22619 5.41520 5.55594 5.61871 5.69453 5.89672 5.99257 6.02374 6.35162 6.57334 6.63395 6.84012 7.22011 7.97870 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.024075 B = 0.007752 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.745605 B = 3610.898243 C = 4574.752605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.019 3.981 3 Si 1.102 2.898 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.061 3.939 10 C -0.245 4.245 11 C -0.091 4.091 12 C -0.221 4.221 13 C -0.112 4.112 14 C 0.014 3.986 15 N -0.631 5.631 16 C 0.549 3.451 17 O -0.576 6.576 18 C -0.250 4.250 19 C -0.066 4.066 20 C -0.096 4.096 21 C -0.102 4.102 22 H 0.280 0.720 23 H 0.112 0.888 24 H 0.132 0.868 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.412 0.588 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 -7.052 -7.303 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.196 4.196 3 Si 0.924 3.076 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.057 3.943 10 C -0.264 4.264 11 C -0.109 4.109 12 C -0.240 4.240 13 C -0.133 4.133 14 C -0.081 4.081 15 N -0.271 5.271 16 C 0.341 3.659 17 O -0.459 6.459 18 C -0.253 4.253 19 C -0.085 4.085 20 C -0.132 4.132 21 C -0.139 4.139 22 H 0.091 0.909 23 H 0.130 0.870 24 H 0.150 0.850 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.248 0.752 28 H 0.171 0.829 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.708 -5.656 -6.809 10.025 hybrid contribution -0.543 -1.717 0.110 1.805 sum 4.165 -7.373 -6.699 10.797 Atomic orbital electron populations 1.70626 1.08484 1.32793 1.33843 1.28148 0.95630 1.06491 0.89348 0.83229 0.74649 0.70840 0.78919 1.18407 1.19108 1.20668 1.20343 0.97158 0.96916 1.42758 0.92322 1.17718 0.92338 0.92560 0.91676 1.20926 0.97653 1.04135 1.03727 1.20768 0.93192 0.97970 0.99001 1.20782 1.00222 0.98906 1.04107 1.21374 0.93967 0.99309 0.98610 1.18048 0.93441 0.96820 0.99822 1.42880 1.28732 1.16178 1.39264 1.18470 0.82424 0.81056 0.83952 1.90613 1.30781 1.76831 1.47715 1.22858 1.04322 0.98255 0.99865 1.25313 0.96365 0.92865 0.93968 1.21823 0.95690 0.97327 0.98340 1.21797 0.96880 0.99754 0.95477 0.90890 0.87019 0.84988 0.85586 0.85504 0.75179 0.82872 0.86117 0.86449 0.89173 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.09 13.66 21.83 0.30 -43.79 16 2 C 0.02 0.99 5.38 85.26 0.46 1.45 16 3 Si 1.10 47.59 25.01 68.60 1.72 49.31 16 4 H -0.26 -10.38 6.37 99.48 0.63 -9.75 16 5 H -0.27 -11.54 7.10 99.48 0.71 -10.83 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.54 -28.69 8.75 23.38 0.20 -28.49 16 8 H 0.06 3.17 7.21 -2.91 -0.02 3.15 16 9 C 0.06 3.15 5.17 -21.17 -0.11 3.04 16 10 C -0.24 -11.73 7.33 22.46 0.16 -11.57 16 11 C -0.09 -3.87 9.96 22.01 0.22 -3.65 16 12 C -0.22 -9.52 10.04 22.41 0.22 -9.29 16 13 C -0.11 -5.37 8.78 22.37 0.20 -5.17 16 14 C 0.01 0.68 6.53 38.92 0.25 0.93 16 15 N -0.63 -27.63 5.17 -305.58 -1.58 -29.21 16 16 C 0.55 22.60 7.64 86.55 0.66 23.26 16 17 O -0.58 -27.13 13.97 -4.11 -0.06 -27.19 16 18 C -0.25 -7.53 6.84 -20.06 -0.14 -7.66 16 19 C -0.07 -1.49 12.10 23.18 0.28 -1.21 16 20 C -0.10 -1.45 8.22 28.03 0.23 -1.22 16 21 C -0.10 -2.21 8.05 28.02 0.23 -1.99 16 22 H 0.28 14.58 8.73 -92.71 -0.81 13.78 16 23 H 0.11 5.20 4.36 -2.91 -0.01 5.19 16 24 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 25 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 26 H 0.13 6.13 5.40 -2.91 -0.02 6.11 16 27 H 0.41 16.83 7.17 -92.71 -0.66 16.16 16 28 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.43 272.78 3.63 -60.80 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.38 Total: 31.66 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 2.87 Total: -41.58 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.28 Total: -73.00 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.72 Total: 49.31 kcal Total: -64.43 3.63 -60.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335323141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.017 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds