Wall clock time and date at job start Mon Mar 30 2020 18:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47088 * 2 1 4 4 C 1.53000 * 109.47292 * 119.99957 * 2 1 3 5 5 H 1.09009 * 112.77829 * 50.23354 * 4 2 1 6 6 C 1.53493 * 113.46935 * 279.45583 * 4 2 1 7 7 C 1.53752 * 83.25915 * 218.98088 * 6 4 2 8 8 N 1.47061 * 87.88733 * 26.23637 * 7 6 4 9 9 C 1.34776 * 136.05903 * 152.96764 * 8 7 6 10 10 O 1.21288 * 120.00255 * 174.75510 * 9 8 7 11 11 C 1.50702 * 120.00198 * 354.75235 * 9 8 7 12 12 S 1.80992 * 109.47525 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00118 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00060 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00070 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99737 * 359.71858 * 15 13 12 17 17 Si 1.86796 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47301 * 89.99692 * 17 15 13 19 19 H 1.48504 * 109.47136 * 209.99736 * 17 15 13 20 20 H 1.48501 * 109.47243 * 329.99439 * 17 15 13 21 21 H 1.09000 * 109.47135 * 304.96745 * 1 2 3 22 22 H 1.09003 * 109.46714 * 64.96734 * 1 2 3 23 23 H 1.08998 * 109.46654 * 184.96743 * 1 2 3 24 24 H 1.08996 * 109.47252 * 240.00037 * 2 1 3 25 25 H 1.09006 * 109.47329 * 53.75002 * 3 2 1 26 26 H 1.09006 * 109.47534 * 173.74868 * 3 2 1 27 27 H 1.09001 * 109.47282 * 293.74761 * 3 2 1 28 28 H 1.09009 * 114.20372 * 332.73419 * 6 4 2 29 29 H 1.09004 * 114.20970 * 105.36449 * 6 4 2 30 30 H 1.09005 * 113.46628 * 271.50205 * 7 6 4 31 31 H 1.08999 * 113.55374 * 140.98231 * 7 6 4 32 32 H 1.08994 * 109.46892 * 59.99791 * 11 9 8 33 33 H 1.09008 * 109.47041 * 300.00292 * 11 9 8 34 34 H 0.97004 * 119.99479 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5746 -1.6964 1.3932 6 6 2.0258 0.1548 2.5095 7 6 3.3569 -0.5577 2.8001 8 7 3.5069 -0.7518 1.3501 9 6 4.5357 -0.8989 0.4920 10 8 4.3207 -1.1407 -0.6769 11 6 5.9534 -0.7630 0.9848 12 16 7.0983 -1.0119 -0.3947 13 6 8.6350 -0.8028 0.4415 14 1 8.6491 -0.5890 1.5000 15 6 9.8276 -0.9129 -0.2602 16 7 9.8106 -1.1790 -1.5493 17 14 11.4568 -0.6920 0.6265 18 1 11.9243 -2.0055 1.1376 19 1 12.4630 -0.1412 -0.3167 20 1 11.2784 0.2466 1.7634 21 1 -0.3633 0.5890 0.8421 22 1 -0.3633 0.4349 -0.9312 23 1 -0.3632 -1.0238 0.0890 24 1 1.8934 -0.5138 -0.8899 25 1 1.5882 1.9876 0.8288 26 1 3.1243 1.4446 0.1119 27 1 1.7709 1.9230 -0.9406 28 1 2.1205 1.2228 2.3126 29 1 1.2269 -0.0847 3.2114 30 1 3.2387 -1.4898 3.3529 31 1 4.1155 0.0954 3.2314 32 1 6.1436 -1.5107 1.7547 33 1 6.0990 0.2334 1.4022 34 1 10.6440 -1.2563 -2.0395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343234773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:18 Heat of formation + Delta-G solvation = -31.662663 kcal Electronic energy + Delta-G solvation = -15515.048342 eV Core-core repulsion = 12960.343724 eV Total energy + Delta-G solvation = -2554.704618 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.103 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.64088 -38.97096 -35.42119 -34.61680 -31.86545 -29.42251 -28.09130 -27.69406 -26.53236 -23.35181 -21.65620 -20.04117 -19.15338 -17.85909 -17.11919 -16.93329 -16.87137 -16.15789 -15.76864 -15.24628 -14.66995 -14.38401 -14.05292 -13.96325 -13.49526 -13.25966 -13.16833 -13.11998 -12.90640 -12.62773 -12.50448 -12.22878 -11.92235 -11.76801 -11.74763 -11.16813 -11.12836 -10.71392 -10.32359 -9.67262 -8.71594 -8.37315 -6.16767 1.20765 1.41157 1.42326 1.54313 1.60419 2.03845 2.25182 2.96743 3.21723 3.43343 3.70219 3.89349 4.01124 4.06201 4.21462 4.26785 4.41197 4.43760 4.59562 4.66439 4.70609 4.78697 4.86537 5.02377 5.03914 5.11089 5.26533 5.29499 5.38167 5.44762 5.52041 6.16795 6.71712 7.03373 7.16963 8.72249 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.047566 B = 0.005085 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.515078 B = 5505.368675 C = 5812.586536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C -0.137 4.137 4 C 0.127 3.873 5 H 0.101 0.899 6 C -0.131 4.131 7 C 0.092 3.908 8 N -0.651 5.651 9 C 0.556 3.444 10 O -0.568 6.568 11 C -0.118 4.118 12 S -0.151 6.151 13 C -0.548 4.548 14 H 0.081 0.919 15 C 0.014 3.986 16 N -0.912 5.912 17 Si 1.001 2.999 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.258 1.258 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.022 0.978 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 4.017 12.929 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.025 3.975 5 H 0.119 0.881 6 C -0.168 4.168 7 C -0.030 4.030 8 N -0.388 5.388 9 C 0.345 3.655 10 O -0.447 6.447 11 C -0.269 4.269 12 S 0.076 5.924 13 C -0.696 4.696 14 H 0.099 0.901 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.822 3.178 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.182 1.182 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.007 3.606 10.916 21.364 hybrid contribution 1.611 0.066 0.984 1.889 sum -16.396 3.671 11.900 20.589 Atomic orbital electron populations 1.21692 0.91816 1.02637 1.02841 1.21233 0.97816 0.96332 0.97216 1.21807 0.99535 0.95886 1.02220 1.23094 0.78420 0.99692 0.96289 0.88125 1.23630 0.97518 1.00052 0.95578 1.23349 0.98228 1.01334 0.80082 1.49911 1.06547 1.71824 1.10505 1.19581 0.85535 0.75414 0.84931 1.90668 1.85329 1.49545 1.19110 1.23261 0.94400 1.05762 1.03469 1.85566 0.99505 1.93629 1.13672 1.23189 0.91919 1.56636 0.97833 0.90067 1.26163 1.03483 0.93692 0.95723 1.70192 1.29161 1.46383 1.09084 0.84918 0.75767 0.79035 0.78036 1.19169 1.20102 1.18150 0.90103 0.92715 0.91985 0.94265 0.89501 0.95831 0.93383 0.87954 0.85498 0.87636 0.89730 0.88078 0.88130 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.17 71.98 0.66 -1.41 16 2 C -0.11 -2.53 2.75 -10.79 -0.03 -2.56 16 3 C -0.14 -3.28 8.18 71.98 0.59 -2.69 16 4 C 0.13 2.68 3.81 41.79 0.16 2.84 16 5 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 6 C -0.13 -1.64 7.68 31.01 0.24 -1.40 16 7 C 0.09 1.58 8.43 83.26 0.70 2.28 16 8 N -0.65 -18.71 2.99 -833.27 -2.49 -21.20 16 9 C 0.56 22.86 7.49 87.66 0.66 23.52 16 10 O -0.57 -28.61 15.61 -3.05 -0.05 -28.66 16 11 C -0.12 -5.11 5.99 71.24 0.43 -4.68 16 12 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 13 C -0.55 -32.26 9.50 67.96 0.65 -31.62 16 14 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 15 C 0.01 0.82 5.49 84.86 0.47 1.29 16 16 N -0.91 -57.12 13.22 21.65 0.29 -56.84 16 17 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.04 1.30 7.39 -2.39 -0.02 1.28 16 25 H 0.09 1.46 6.49 -2.38 -0.02 1.44 16 26 H 0.02 0.71 7.18 -2.38 -0.02 0.69 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.31 5.71 -2.38 -0.01 1.30 16 29 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 33 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -79.55 296.06 4.19 -75.36 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.07 Total: 9.45 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.51 Total: -14.43 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.21 Total: -78.04 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -79.55 4.19 -75.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343234773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.695 kcal (2) G-P(sol) polarization free energy of solvation -79.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds