Wall clock time and date at job start Mon Mar 30 2020 18:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00394 * 2 1 4 4 C 1.50699 * 109.47393 * 179.97438 * 3 2 1 5 5 N 1.30865 * 125.88696 * 179.97438 * 4 3 2 6 6 C 1.33692 * 109.76933 * 180.02562 * 5 4 3 7 7 S 1.76199 * 125.61762 * 179.97438 * 6 5 4 8 8 C 1.81398 * 103.00071 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47199 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46891 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00525 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99840 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99704 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 119.99992 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47485 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47094 * 120.00076 * 14 12 10 17 17 H 1.48503 * 109.47520 * 240.00125 * 14 12 10 18 18 N 1.31248 * 108.76478 * 0.22592 * 6 5 4 19 19 N 1.34349 * 125.88497 * 359.97438 * 4 3 2 20 20 H 0.96999 * 126.75922 * 0.02562 * 19 4 3 21 21 H 1.08998 * 109.47202 * 300.00474 * 1 2 3 22 22 H 1.09005 * 109.46275 * 60.00481 * 1 2 3 23 23 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47269 * 59.99185 * 3 2 1 25 25 H 1.09010 * 109.46984 * 299.99410 * 3 2 1 26 26 H 1.08998 * 109.47085 * 299.99567 * 8 7 6 27 27 H 1.09000 * 109.46946 * 60.00083 * 8 7 6 28 28 H 1.08990 * 109.47017 * 300.00128 * 9 8 7 29 29 H 1.09000 * 109.46988 * 60.00250 * 9 8 7 30 30 H 0.97003 * 119.99697 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.3611 2.1827 0.0003 6 6 5.6121 1.7112 0.0005 7 16 7.0774 2.6897 -0.0004 8 6 8.3983 1.4465 -0.0004 9 6 9.7584 2.1474 -0.0018 10 6 10.8558 1.1145 -0.0012 11 1 10.6080 0.0633 -0.0003 12 6 12.1762 1.5115 -0.0028 13 7 12.4779 2.7916 -0.0044 14 14 13.5364 0.2312 -0.0028 15 1 12.9373 -1.1276 -0.0015 16 1 14.3756 0.4005 -1.2162 17 1 14.3778 0.4028 1.2088 18 7 5.5690 0.3995 -0.0039 19 7 4.2117 0.0390 0.0016 20 1 3.8501 -0.8611 0.0017 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6886 1.8464 0.8899 25 1 1.6888 1.8463 -0.8901 26 1 8.3111 0.8237 0.8899 27 1 8.3104 0.8230 -0.8901 28 1 9.8454 2.7699 -0.8922 29 1 9.8466 2.7712 0.8877 30 1 13.4069 3.0709 -0.0051 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353831655.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:27 Heat of formation + Delta-G solvation = 4.862425 kcal Electronic energy + Delta-G solvation = -14331.022339 eV Core-core repulsion = 11674.361224 eV Total energy + Delta-G solvation = -2656.661115 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.078 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.23034 -38.95307 -35.81226 -33.70398 -33.33465 -32.86354 -29.02283 -27.34757 -26.69454 -24.36892 -23.16192 -22.08679 -19.46730 -18.68730 -17.60170 -17.45360 -17.09707 -16.60801 -16.48978 -16.33307 -15.57037 -15.32359 -14.32410 -13.97713 -13.65313 -13.61509 -13.18031 -12.98318 -12.48364 -12.34327 -12.32635 -11.85126 -11.73685 -11.73176 -11.37179 -11.24435 -11.05202 -10.64709 -10.59676 -8.79746 -8.22993 -6.35484 0.09946 0.32682 1.14627 1.42612 1.42970 1.49017 1.56532 1.82436 2.22055 2.41697 3.10823 3.53362 3.73642 4.17875 4.24270 4.26457 4.32460 4.55382 4.61809 4.64243 4.79891 4.92204 4.94804 5.36831 5.46505 5.73389 5.88947 6.04674 6.11123 6.71865 6.77149 7.33455 8.89069 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.066377 B = 0.003759 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.729684 B = 7447.350412 C = 7838.027746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.149 3.851 4 C 0.299 3.701 5 N -0.540 5.540 6 C 0.205 3.795 7 S -0.004 6.004 8 C -0.072 4.072 9 C 0.044 3.956 10 C -0.541 4.541 11 H 0.064 0.936 12 C 0.005 3.995 13 N -0.928 5.928 14 Si 0.971 3.029 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 N -0.341 5.341 19 N -0.456 5.456 20 H 0.457 0.543 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.630 -5.288 0.017 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.335 6.335 3 C 0.070 3.930 4 C 0.018 3.982 5 N -0.273 5.273 6 C -0.185 4.185 7 S 0.224 5.776 8 C -0.221 4.221 9 C 0.005 3.995 10 C -0.580 4.580 11 H 0.082 0.918 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.795 3.205 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.176 5.176 19 N -0.176 5.176 20 H 0.306 0.694 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.120 0.880 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.785 -4.289 0.012 24.169 hybrid contribution 0.255 -2.057 0.000 2.073 sum -23.530 -6.346 0.012 24.371 Atomic orbital electron populations 1.23041 0.76942 1.04628 1.01972 1.87708 1.23402 1.26343 1.96006 1.20889 0.79782 0.86491 1.05826 1.24743 0.97273 0.81905 0.94278 1.70390 0.97691 1.31668 1.27585 1.26168 0.98541 0.92231 1.01577 1.85653 0.89745 1.10015 1.92143 1.23635 0.94890 0.98742 1.04842 1.18726 0.88558 0.95590 0.96653 1.21492 0.91371 0.93419 1.51747 0.91787 1.25958 1.01489 0.97620 0.94324 1.70097 1.19418 1.16424 1.50823 0.85311 0.78296 0.78986 0.77918 1.18683 1.20182 1.20168 1.78414 0.96439 1.13077 1.29650 1.47692 1.02937 1.10939 1.56058 0.69355 0.92082 0.92078 0.87975 0.86953 0.86944 0.90286 0.90293 0.97309 0.97311 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.42 -5.22 10.22 -148.98 -1.52 -6.74 16 3 C 0.15 2.03 6.56 71.24 0.47 2.50 16 4 C 0.30 7.49 8.03 138.24 1.11 8.60 16 5 N -0.54 -17.93 11.21 -188.59 -2.11 -20.05 16 6 C 0.20 7.76 8.28 180.47 1.49 9.26 16 7 S 0.00 -0.15 22.16 -56.49 -1.25 -1.41 16 8 C -0.07 -3.23 5.50 71.98 0.40 -2.84 16 9 C 0.04 2.36 4.98 29.85 0.15 2.50 16 10 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 11 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 12 C 0.00 0.28 5.46 84.66 0.46 0.74 16 13 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 14 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 18 N -0.34 -12.35 12.36 -58.58 -0.72 -13.07 16 19 N -0.46 -12.20 7.27 -50.73 -0.37 -12.57 16 20 H 0.46 9.18 8.61 -213.10 -1.84 7.35 16 21 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 22 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 23 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -70.93 284.24 1.21 -69.72 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -0.68 Total: 2.19 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 5.56 Total: -8.45 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -2.92 Total: -101.49 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -1.52 Total: -6.74 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.25 Total: -1.41 kcal Total: -70.93 1.21 -69.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353831655.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.586 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds