Wall clock time and date at job start Mon Mar 30 2020 18:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.88696 * 2 1 4 4 C 1.33692 * 109.76933 * 180.02562 * 3 2 1 5 5 S 1.76199 * 125.61762 * 179.97438 * 4 3 2 6 6 C 1.81398 * 103.00071 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47199 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.46842 * 179.97438 * 7 6 5 9 9 C 1.42899 * 113.99716 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47194 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00119 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00348 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00116 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47056 * 89.99803 * 14 12 10 16 16 H 1.48499 * 109.47043 * 210.00229 * 14 12 10 17 17 H 1.48502 * 109.46925 * 330.00139 * 14 12 10 18 18 N 1.31248 * 108.76478 * 0.22592 * 4 3 2 19 19 N 1.34349 * 125.88497 * 180.02562 * 2 1 3 20 20 H 0.96999 * 126.75922 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.47179 * 89.97411 * 1 2 3 22 22 H 1.08998 * 109.47400 * 209.97771 * 1 2 3 23 23 H 1.09000 * 109.47240 * 329.98370 * 1 2 3 24 24 H 1.08998 * 109.47085 * 299.99567 * 6 5 4 25 25 H 1.09000 * 109.46946 * 60.00083 * 6 5 4 26 26 H 1.08990 * 109.47017 * 300.00128 * 7 6 5 27 27 H 1.09000 * 109.46988 * 60.00250 * 7 6 5 28 28 H 1.08996 * 109.47319 * 299.99867 * 9 8 7 29 29 H 1.09003 * 109.47304 * 60.00625 * 9 8 7 30 30 H 0.96990 * 120.00067 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6453 -0.0027 7 6 7.6574 1.4514 -0.0042 8 8 8.7720 0.5572 -0.0046 9 6 10.0422 1.2118 -0.0066 10 6 11.1397 0.1790 -0.0075 11 1 10.8919 -0.8722 -0.0071 12 6 12.4600 0.5760 -0.0089 13 7 13.4178 -0.3253 -0.0102 14 14 12.8887 2.3942 -0.0103 15 1 13.0034 2.8768 1.3893 16 1 14.1818 2.5973 -0.7116 17 1 11.8215 3.1538 -0.7099 18 7 3.6191 -0.6220 -0.0058 19 7 2.2945 -1.0885 -0.0005 20 1 2.0051 -2.0143 -0.0012 21 1 -0.3634 0.0005 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3634 0.8898 0.5141 24 1 6.3195 0.0170 0.8872 25 1 6.3181 0.0173 -0.8928 26 1 7.6945 2.0793 -0.8942 27 1 7.6964 2.0796 0.8857 28 1 10.1289 1.8342 -0.8972 29 1 10.1309 1.8357 0.8828 30 1 14.3466 -0.0460 -0.0115 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395378927.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:49 Heat of formation + Delta-G solvation = 32.079381 kcal Electronic energy + Delta-G solvation = -14219.222588 eV Core-core repulsion = 11563.741689 eV Total energy + Delta-G solvation = -2655.480899 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.078 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.29003 -37.10646 -33.24836 -32.82409 -32.65653 -31.14347 -28.52013 -27.70277 -23.61051 -22.62341 -21.88426 -21.21421 -18.38785 -16.91634 -16.65582 -16.14693 -15.85343 -15.56468 -14.64946 -14.54454 -13.67316 -13.58506 -13.38482 -13.24619 -12.92055 -12.48079 -12.17584 -11.52894 -11.23640 -10.89409 -10.82141 -10.70621 -10.68930 -10.21557 -10.01595 -9.88029 -9.22946 -8.93040 -8.53021 -7.80713 -6.13462 -4.13350 0.98112 1.22901 1.98055 2.47501 2.61593 3.24725 3.31783 3.33081 3.90066 4.34166 4.41205 4.62518 4.91294 4.99003 5.08643 5.17821 5.26864 5.39900 5.59079 5.64554 5.92081 5.95082 6.03632 6.55084 6.71447 6.95033 7.55002 7.63438 7.92085 8.60589 8.97115 9.44901 10.99420 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.073140 B = 0.003560 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.734952 B = 7862.741863 C = 8214.425692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.289 3.711 3 N -0.518 5.518 4 C 0.214 3.786 5 S 0.032 5.968 6 C -0.112 4.112 7 C 0.076 3.924 8 O -0.375 6.375 9 C 0.169 3.831 10 C -0.522 4.522 11 H 0.083 0.917 12 C 0.073 3.927 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.265 1.265 18 N -0.312 5.312 19 N -0.479 5.479 20 H 0.441 0.559 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.007 0.993 29 H 0.002 0.998 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.784 2.141 0.000 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 N -0.249 5.249 4 C -0.176 4.176 5 S 0.258 5.742 6 C -0.261 4.261 7 C -0.003 4.003 8 O -0.295 6.295 9 C 0.094 3.906 10 C -0.560 4.560 11 H 0.101 0.899 12 C -0.129 4.129 13 N -0.533 5.533 14 Si 0.703 3.297 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.190 1.190 18 N -0.146 5.146 19 N -0.199 5.199 20 H 0.287 0.713 21 H 0.112 0.888 22 H 0.103 0.897 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.003 3.034 -0.006 25.187 hybrid contribution -0.026 -0.952 0.010 0.952 sum -25.030 2.082 0.004 25.116 Atomic orbital electron populations 1.20418 0.83275 1.05172 1.04739 1.24494 0.96693 0.82666 0.95274 1.70559 0.99491 1.29021 1.25866 1.26028 0.97383 0.92937 1.01252 1.85437 0.90618 1.05881 1.92255 1.23563 0.93720 1.00926 1.07876 1.21818 0.85701 0.92112 1.00689 1.87918 1.13821 1.32582 1.95172 1.20669 0.80694 0.94501 0.94727 1.20870 0.88560 0.94977 1.51547 0.89903 1.24764 0.95835 0.97785 0.94536 1.69870 0.99907 1.33358 1.50125 0.86843 0.78434 0.85600 0.78860 1.19833 1.20718 1.18971 1.78492 0.96866 1.10497 1.28759 1.47874 1.04199 1.10048 1.57737 0.71331 0.88794 0.89701 0.88156 0.88172 0.88175 0.93043 0.93054 0.97564 0.98012 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.29 2.78 8.23 -155.74 -1.28 1.50 16 3 N -0.52 -7.04 11.21 -10.96 -0.12 -7.16 16 4 C 0.21 3.18 8.28 -90.96 -0.75 2.43 16 5 S 0.03 0.45 22.16 -107.50 -2.38 -1.93 16 6 C -0.11 -1.75 5.93 37.16 0.22 -1.53 16 7 C 0.08 1.35 5.95 37.16 0.22 1.57 16 8 O -0.38 -8.80 10.33 -35.23 -0.36 -9.16 16 9 C 0.17 4.32 4.76 36.01 0.17 4.49 16 10 C -0.52 -15.59 9.99 -34.44 -0.34 -15.94 16 11 H 0.08 2.71 8.06 -52.49 -0.42 2.28 16 12 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16 14 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 18 N -0.31 -4.48 12.36 30.13 0.37 -4.11 16 19 N -0.48 -4.73 7.43 32.61 0.24 -4.48 16 20 H 0.44 2.55 8.96 -182.34 -1.63 0.92 16 21 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 22 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 23 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 25 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.01 0.16 7.20 -51.93 -0.37 -0.21 16 29 H 0.00 0.05 7.57 -51.93 -0.39 -0.34 16 30 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 281.87 15.07 4.25 4.25 Total: -1.00 -35.38 281.87 -8.34 -43.72 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -4.95 Total: -5.55 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.48 Total: -5.36 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 1.27 Total: -42.64 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.36 Total: -9.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.38 Total: -1.93 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.38 -8.34 -43.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395378927.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.798 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds