Wall clock time and date at job start Mon Mar 30 2020 18:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.88696 * 2 1 4 4 C 1.33692 * 109.76933 * 180.02562 * 3 2 1 5 5 S 1.76199 * 125.61762 * 179.97438 * 4 3 2 6 6 C 1.81398 * 103.00071 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47199 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.46842 * 179.97438 * 7 6 5 9 9 C 1.42899 * 113.99716 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47194 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00119 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00348 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00116 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47056 * 89.99803 * 14 12 10 16 16 H 1.48499 * 109.47043 * 210.00229 * 14 12 10 17 17 H 1.48502 * 109.46925 * 330.00139 * 14 12 10 18 18 N 1.31248 * 108.76478 * 0.22592 * 4 3 2 19 19 N 1.34349 * 125.88497 * 180.02562 * 2 1 3 20 20 H 0.96999 * 126.75922 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.47179 * 89.97411 * 1 2 3 22 22 H 1.08998 * 109.47400 * 209.97771 * 1 2 3 23 23 H 1.09000 * 109.47240 * 329.98370 * 1 2 3 24 24 H 1.08998 * 109.47085 * 299.99567 * 6 5 4 25 25 H 1.09000 * 109.46946 * 60.00083 * 6 5 4 26 26 H 1.08990 * 109.47017 * 300.00128 * 7 6 5 27 27 H 1.09000 * 109.46988 * 60.00250 * 7 6 5 28 28 H 1.08996 * 109.47319 * 299.99867 * 9 8 7 29 29 H 1.09003 * 109.47304 * 60.00625 * 9 8 7 30 30 H 0.96990 * 120.00067 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6453 -0.0027 7 6 7.6574 1.4514 -0.0042 8 8 8.7720 0.5572 -0.0046 9 6 10.0422 1.2118 -0.0066 10 6 11.1397 0.1790 -0.0075 11 1 10.8919 -0.8722 -0.0071 12 6 12.4600 0.5760 -0.0089 13 7 13.4178 -0.3253 -0.0102 14 14 12.8887 2.3942 -0.0103 15 1 13.0034 2.8768 1.3893 16 1 14.1818 2.5973 -0.7116 17 1 11.8215 3.1538 -0.7099 18 7 3.6191 -0.6220 -0.0058 19 7 2.2945 -1.0885 -0.0005 20 1 2.0051 -2.0143 -0.0012 21 1 -0.3634 0.0005 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3634 0.8898 0.5141 24 1 6.3195 0.0170 0.8872 25 1 6.3181 0.0173 -0.8928 26 1 7.6945 2.0793 -0.8942 27 1 7.6964 2.0796 0.8857 28 1 10.1289 1.8342 -0.8972 29 1 10.1309 1.8357 0.8828 30 1 14.3466 -0.0460 -0.0115 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395378927.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:49 Heat of formation + Delta-G solvation = 6.187378 kcal Electronic energy + Delta-G solvation = -14220.345350 eV Core-core repulsion = 11563.741689 eV Total energy + Delta-G solvation = -2656.603661 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.078 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.17638 -38.85081 -34.97450 -34.01488 -33.55524 -32.67168 -29.83296 -29.07351 -24.73380 -24.09311 -23.71915 -22.07410 -19.30213 -19.02729 -17.86641 -17.37851 -17.21335 -16.87922 -16.48979 -15.49448 -15.09942 -14.97540 -14.51340 -14.46455 -13.85627 -13.75406 -13.14945 -13.05176 -12.85807 -12.57005 -12.47684 -11.89900 -11.80486 -11.76333 -11.41203 -11.21869 -10.94824 -10.90873 -10.46071 -8.88941 -8.38311 -6.47388 -0.11625 0.35557 0.88327 1.35244 1.38423 1.49369 1.55170 1.84257 2.29817 2.94403 3.07030 3.26626 3.71701 3.78125 3.91834 4.30205 4.52251 4.53581 4.59938 4.68617 4.75451 4.76000 4.97539 4.99542 5.10572 5.40036 5.87772 6.08451 6.55755 6.65389 6.75748 7.16848 8.78815 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.073140 B = 0.003560 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.734952 B = 7862.741863 C = 8214.425692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.301 3.699 3 N -0.553 5.553 4 C 0.194 3.806 5 S 0.051 5.949 6 C -0.105 4.105 7 C 0.071 3.929 8 O -0.404 6.404 9 C 0.178 3.822 10 C -0.550 4.550 11 H 0.029 0.971 12 C 0.013 3.987 13 N -0.942 5.942 14 Si 0.957 3.043 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.242 1.242 18 N -0.347 5.347 19 N -0.469 5.469 20 H 0.458 0.542 21 H 0.113 0.887 22 H 0.116 0.884 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.744 4.091 0.009 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.022 3.978 3 N -0.285 5.285 4 C -0.196 4.196 5 S 0.278 5.722 6 C -0.255 4.255 7 C -0.007 4.007 8 O -0.324 6.324 9 C 0.102 3.898 10 C -0.588 4.588 11 H 0.048 0.952 12 C -0.185 4.185 13 N -0.582 5.582 14 Si 0.778 3.222 15 H -0.182 1.182 16 H -0.199 1.199 17 H -0.165 1.165 18 N -0.182 5.182 19 N -0.190 5.190 20 H 0.307 0.693 21 H 0.132 0.868 22 H 0.135 0.865 23 H 0.123 0.877 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -27.012 4.946 0.004 27.461 hybrid contribution 0.401 -1.722 0.006 1.768 sum -26.612 3.225 0.010 26.806 Atomic orbital electron populations 1.20733 0.79100 1.06969 1.06466 1.25476 0.98491 0.81474 0.92400 1.70545 0.99255 1.30988 1.27713 1.26110 0.98073 0.93249 1.02210 1.85193 0.89700 1.04840 1.92493 1.23355 0.93962 1.01041 1.07112 1.22069 0.84440 0.91946 1.02278 1.87858 1.14515 1.34601 1.95425 1.20416 0.80447 0.93098 0.95792 1.21160 0.91060 0.93806 1.52789 0.95245 1.25874 0.95200 1.04185 0.93282 1.70029 1.00697 1.36565 1.50859 0.85585 0.78884 0.77830 0.79931 1.18236 1.19861 1.16487 1.78373 0.99592 1.10562 1.29670 1.47812 1.02870 1.11245 1.57112 0.69285 0.86850 0.86510 0.87697 0.88977 0.89003 0.91390 0.91319 0.96276 0.96353 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.30 5.18 8.23 138.24 1.14 6.32 16 3 N -0.55 -14.41 11.21 -188.59 -2.11 -16.53 16 4 C 0.19 5.67 8.28 180.47 1.49 7.17 16 5 S 0.05 1.43 22.16 -56.49 -1.25 0.18 16 6 C -0.11 -3.30 5.93 71.98 0.43 -2.87 16 7 C 0.07 2.45 5.95 71.98 0.43 2.88 16 8 O -0.40 -19.04 10.33 -148.98 -1.54 -20.58 16 9 C 0.18 8.96 4.76 71.24 0.34 9.30 16 10 C -0.55 -33.85 9.99 25.60 0.26 -33.60 16 11 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 12 C 0.01 0.75 5.47 84.65 0.46 1.22 16 13 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 14 Si 0.96 43.15 27.47 68.60 1.88 45.04 16 15 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 18 N -0.35 -9.85 12.36 -58.58 -0.72 -10.57 16 19 N -0.47 -8.56 7.43 -50.73 -0.38 -8.94 16 20 H 0.46 4.46 8.96 -213.10 -1.91 2.55 16 21 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 22 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 29 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 30 H 0.27 15.86 8.31 -92.72 -0.77 15.09 16 Total: -1.00 -79.34 281.87 0.66 -78.68 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -0.81 Total: 1.28 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.29 Total: -9.19 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -2.92 Total: -95.41 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.54 Total: -20.58 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.25 Total: 0.18 kcal Total: -79.34 0.66 -78.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395378927.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.872 kcal (2) G-P(sol) polarization free energy of solvation -79.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds