Wall clock time and date at job start Mon Mar 30 2020 18:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47262 * 255.38814 * 3 2 1 5 5 C 1.37094 * 119.99939 * 264.35332 * 4 3 2 6 6 H 1.07997 * 119.99745 * 196.23312 * 5 4 3 7 7 C 1.38952 * 120.00389 * 16.23473 * 5 4 3 8 8 N 1.31411 * 119.99757 * 21.27496 * 7 5 4 9 9 Si 1.86793 * 120.00204 * 201.27674 * 7 5 4 10 10 H 1.48497 * 109.47353 * 84.89598 * 9 7 5 11 11 H 1.48501 * 109.47362 * 204.89800 * 9 7 5 12 12 H 1.48504 * 109.46947 * 324.89421 * 9 7 5 13 13 C 1.34772 * 119.99561 * 84.35033 * 4 3 2 14 14 O 1.21298 * 119.99681 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00407 * 0.02562 * 13 4 3 16 16 H 1.09000 * 115.54836 * 325.66839 * 15 13 4 17 17 C 1.53001 * 117.49907 * 180.02562 * 15 13 4 18 18 H 1.09004 * 117.49810 * 144.99868 * 17 15 13 19 19 C 1.52998 * 117.50184 * 359.97438 * 17 15 13 20 20 C 1.53002 * 60.03065 * 252.49620 * 17 15 13 21 21 F 1.39902 * 117.49880 * 107.50071 * 20 17 15 22 22 F 1.39900 * 117.49810 * 252.52230 * 20 17 15 23 23 H 4.40649 * 5.51422 * 179.97438 * 4 1 2 24 24 H 1.09006 * 109.47411 * 135.39246 * 3 2 1 25 25 H 1.09003 * 109.47481 * 15.39143 * 3 2 1 26 26 H 0.96999 * 120.00280 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.46891 * 60.08609 * 19 17 15 28 28 H 1.09007 * 109.47098 * 300.09058 * 19 17 15 29 29 H 1.08995 * 109.47691 * 180.08953 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3493 1.3366 5 6 3.4723 1.6460 1.6262 6 1 4.0685 1.8664 2.4993 7 6 3.0479 2.6766 0.7965 8 7 2.0141 2.4993 0.0047 9 14 3.9467 4.3140 0.8064 10 1 5.1127 4.2443 -0.1105 11 1 3.0252 5.3874 0.3546 12 1 4.4167 4.6123 2.1831 13 6 3.2509 -0.6047 2.2814 14 8 3.6547 -0.3159 3.3881 15 6 2.8798 -2.0301 1.9629 16 1 2.0468 -2.1556 1.2711 17 6 3.0339 -3.0663 3.0780 18 1 2.3027 -3.8736 3.1194 19 6 3.5536 -2.5762 4.4309 20 6 4.0117 -3.0586 1.9012 21 9 5.3122 -2.6039 2.1448 22 9 3.8985 -4.0880 0.9606 23 1 -1.0501 0.0002 -0.0002 24 1 3.0091 0.7325 -0.7217 25 1 3.0098 -0.9900 -0.2728 26 1 1.7180 3.2186 -0.5748 27 1 2.8736 -1.8238 4.8305 28 1 4.5441 -2.1393 4.3031 29 1 3.6136 -3.4160 5.1231 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962541.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:05 Heat of formation + Delta-G solvation = -47.277999 kcal Electronic energy + Delta-G solvation = -17870.477208 eV Core-core repulsion = 14625.421977 eV Total energy + Delta-G solvation = -3245.055231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.081 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.75260 -48.42366 -40.80918 -37.81981 -36.49633 -34.03355 -33.08003 -29.73538 -28.39545 -26.95795 -24.47726 -22.38520 -20.48397 -19.70173 -19.19572 -18.33580 -17.95774 -17.48653 -17.06219 -16.40049 -15.84579 -15.66498 -15.09189 -14.93162 -14.65051 -14.44408 -14.29027 -14.09536 -13.73213 -13.49182 -13.17827 -12.94512 -12.81480 -12.51411 -12.16555 -11.60051 -11.25689 -11.12406 -10.90782 -10.66669 -10.20703 -9.87952 -8.36499 -5.95701 1.24280 1.42327 1.52619 1.52715 1.90698 2.02264 2.28744 2.34460 2.47606 2.86686 3.06012 3.18496 3.56989 3.60255 3.82202 4.08285 4.26014 4.51837 4.58429 4.60210 4.92019 4.94499 5.00611 5.39310 5.44019 5.53122 5.99210 6.38535 7.08850 7.10776 7.35001 7.91551 8.62058 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.008614 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.338068 B = 3249.661482 C = 3688.352008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.161 4.161 3 C 0.233 3.767 4 N -0.443 5.443 5 C -0.351 4.351 6 H 0.080 0.920 7 C 0.004 3.996 8 N -0.869 5.869 9 Si 0.986 3.014 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.464 3.536 14 O -0.600 6.600 15 C -0.186 4.186 16 H 0.151 0.849 17 C -0.089 4.089 18 H 0.176 0.824 19 C -0.111 4.111 20 C 0.204 3.796 21 F -0.168 7.168 22 F -0.155 7.155 23 H 0.237 0.763 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.274 0.726 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -9.356 -0.511 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.162 4.162 3 C 0.110 3.890 4 N -0.160 5.160 5 C -0.478 4.478 6 H 0.097 0.903 7 C -0.200 4.200 8 N -0.505 5.505 9 Si 0.810 3.190 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.201 1.201 13 C 0.253 3.747 14 O -0.486 6.486 15 C -0.208 4.208 16 H 0.169 0.831 17 C -0.108 4.108 18 H 0.193 0.807 19 C -0.167 4.167 20 C 0.166 3.834 21 F -0.149 7.149 22 F -0.135 7.135 23 H 0.253 0.747 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.227 -9.081 -0.164 9.165 hybrid contribution 0.311 1.117 -0.431 1.237 sum -0.916 -7.964 -0.595 8.039 Atomic orbital electron populations 1.25196 0.96303 1.04051 0.99707 1.23328 0.94806 0.97484 1.00625 1.18293 0.85012 0.99868 0.85799 1.43861 1.55217 1.07398 1.09488 1.19613 1.32689 0.82470 1.13059 0.90252 1.25987 0.95398 1.02320 0.96263 1.70170 1.20554 1.34959 1.24859 0.85065 0.78318 0.77052 0.78604 1.19194 1.20035 1.20149 1.19440 0.84383 0.86347 0.84549 1.90510 1.52156 1.82981 1.22995 1.23784 1.00547 0.90876 1.05622 0.83131 1.23909 0.97360 0.98749 0.90815 0.80705 1.21289 1.01533 1.00888 0.93035 1.20102 0.77903 0.89659 0.95719 1.92988 1.38840 1.88862 1.94172 1.93017 1.95748 1.58502 1.66259 0.74656 0.88640 0.89627 0.91606 0.91900 0.93508 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.90 19.25 74.32 1.43 -7.47 15 2 C -0.16 -6.93 10.80 31.12 0.34 -6.59 15 3 C 0.23 10.35 4.80 84.57 0.41 10.76 15 4 N -0.44 -22.61 2.60 -645.40 -1.68 -24.29 15 5 C -0.35 -19.59 9.35 84.04 0.79 -18.81 15 6 H 0.08 4.75 7.37 -2.91 -0.02 4.73 15 7 C 0.00 0.22 4.89 84.93 0.42 0.64 15 8 N -0.87 -44.54 9.42 21.66 0.20 -44.33 15 9 Si 0.99 41.63 29.60 68.60 2.03 43.66 15 10 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 11 H -0.28 -11.14 7.11 99.48 0.71 -10.43 15 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 13 C 0.46 22.43 6.97 87.66 0.61 23.04 15 14 O -0.60 -32.33 12.74 -3.09 -0.04 -32.37 15 15 C -0.19 -6.79 4.79 -11.52 -0.06 -6.84 15 16 H 0.15 4.96 6.73 -2.39 -0.02 4.94 15 17 C -0.09 -2.61 6.39 -10.79 -0.07 -2.67 15 18 H 0.18 3.46 8.14 -2.38 -0.02 3.44 15 19 C -0.11 -3.49 8.40 71.98 0.60 -2.89 15 20 C 0.20 6.83 5.14 30.62 0.16 6.99 15 21 F -0.17 -6.59 16.03 44.97 0.72 -5.87 15 22 F -0.15 -4.68 17.60 44.97 0.79 -3.89 15 23 H 0.24 6.77 7.80 -4.41 -0.03 6.73 15 24 H 0.10 4.53 6.35 -2.38 -0.02 4.51 15 25 H 0.09 3.25 6.97 -2.39 -0.02 3.24 15 26 H 0.27 13.27 8.31 -92.71 -0.77 12.50 15 27 H 0.06 2.25 7.26 -2.39 -0.02 2.23 15 28 H 0.05 1.77 6.21 -2.38 -0.01 1.75 15 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 Total: -1.00 -64.44 263.38 7.83 -56.61 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.18 Total: 14.33 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 4.62 Total: -3.86 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -1.48 Total: -68.62 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.04 Total: -32.37 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 1.51 Total: -9.76 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -64.44 7.83 -56.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962541.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.335 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds