Wall clock time and date at job start Mon Mar 30 2020 18:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47265 * 342.24286 * 3 2 1 5 5 C 1.36970 * 120.00481 * 267.90661 * 4 3 2 6 6 H 1.08008 * 120.00101 * 140.41001 * 5 4 3 7 7 C 1.38972 * 119.99984 * 320.41692 * 5 4 3 8 8 N 1.31415 * 119.99997 * 164.11910 * 7 5 4 9 9 Si 1.86796 * 119.99997 * 344.11405 * 7 5 4 10 10 H 1.48509 * 109.46982 * 95.49172 * 9 7 5 11 11 H 1.48502 * 109.47316 * 215.48913 * 9 7 5 12 12 H 1.48502 * 109.47264 * 335.49418 * 9 7 5 13 13 C 1.34779 * 120.00046 * 87.91019 * 4 3 2 14 14 O 1.21644 * 120.00428 * 185.56557 * 13 4 3 15 15 C 1.47299 * 119.99792 * 5.56085 * 13 4 3 16 16 C 1.38204 * 126.47498 * 155.83543 * 15 13 4 17 17 N 1.34452 * 108.37206 * 180.02562 * 16 15 13 18 18 H 0.97002 * 125.38292 * 179.97438 * 17 16 15 19 19 C 1.37711 * 109.22485 * 359.75609 * 17 16 15 20 20 C 1.43199 * 125.83357 * 180.28250 * 19 17 16 21 21 N 5.58437 * 91.81131 * 94.86773 * 2 1 3 22 22 C 1.36346 * 108.33409 * 0.40545 * 19 17 16 23 23 H 4.40632 * 5.51285 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47092 * 222.24600 * 3 2 1 25 25 H 1.08998 * 109.46914 * 102.24974 * 3 2 1 26 26 H 0.97000 * 120.00215 * 180.02562 * 8 7 5 27 27 H 1.08000 * 125.81242 * 0.03781 * 16 15 13 28 28 H 1.08000 * 126.49268 * 179.87601 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3145 0.4212 5 6 3.4042 -1.5541 1.7426 6 1 3.1448 -2.5057 2.1827 7 6 4.0111 -0.5727 2.5172 8 7 3.9905 -0.6640 3.8280 9 14 4.8562 0.8762 1.6950 10 1 3.9168 2.0245 1.6284 11 1 6.0546 1.2622 2.4824 12 1 5.2688 0.4939 0.3207 13 6 3.3199 -2.2887 -0.4915 14 8 3.6281 -3.4090 -0.1315 15 6 3.1487 -1.9969 -1.9252 16 6 3.7219 -2.6849 -2.9778 17 7 3.3224 -2.1115 -4.1265 18 1 3.5795 -2.3987 -5.0166 19 6 2.4867 -1.0553 -3.8394 20 6 1.8538 -0.2021 -4.7996 21 7 1.3506 0.4736 -5.5614 22 6 2.3670 -0.9591 -2.4846 23 1 -1.0497 -0.0004 -0.0001 24 1 3.0090 0.7616 0.6909 25 1 3.0092 0.2189 -1.0043 26 1 4.4137 0.0212 4.3686 27 1 4.3788 -3.5379 -2.8923 28 1 1.7823 -0.2314 -1.9415 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490987504.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:06 Heat of formation + Delta-G solvation = 134.403466 kcal Electronic energy + Delta-G solvation = -16521.352127 eV Core-core repulsion = 13734.864382 eV Total energy + Delta-G solvation = -2786.487745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.41387 -38.52070 -36.51272 -35.43505 -32.89314 -31.66786 -31.18348 -29.59754 -26.84964 -25.36713 -22.47743 -21.90803 -20.13202 -18.64319 -18.07442 -16.74096 -16.13029 -15.65341 -15.45718 -14.92138 -14.50284 -14.13876 -13.66822 -13.32861 -13.11709 -13.04623 -12.82810 -12.54977 -12.38754 -11.97164 -11.62205 -10.97009 -10.67075 -10.27039 -9.79236 -9.66075 -9.19850 -8.90228 -8.68070 -8.25077 -7.86343 -6.39040 -4.02149 1.36542 2.23344 2.24026 3.00536 3.10472 3.17215 3.18097 3.21763 3.31429 3.39242 3.95827 4.10549 4.12990 4.58499 4.82138 5.07792 5.15351 5.36931 5.41297 5.70539 5.83808 5.95646 6.10354 6.38438 6.59819 6.72270 7.17467 7.37200 7.53510 8.07112 8.26794 8.47362 8.91123 9.26321 9.71290 10.72508 Molecular weight = 243.07amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.008238 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.524494 B = 3398.069859 C = 3722.552700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.179 3.821 4 N -0.454 5.454 5 C -0.313 4.313 6 H 0.109 0.891 7 C 0.060 3.940 8 N -0.864 5.864 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.258 1.258 13 C 0.543 3.457 14 O -0.558 6.558 15 C -0.201 4.201 16 C 0.094 3.906 17 N -0.526 5.526 18 H 0.422 0.578 19 C 0.032 3.968 20 C 0.286 3.714 21 N -0.419 5.419 22 C -0.097 4.097 23 H 0.214 0.786 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.275 0.725 27 H 0.190 0.810 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 1.277 -13.515 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C 0.056 3.944 4 N -0.175 5.175 5 C -0.440 4.440 6 H 0.127 0.873 7 C -0.145 4.145 8 N -0.500 5.500 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.182 1.182 13 C 0.332 3.668 14 O -0.440 6.440 15 C -0.210 4.210 16 C -0.047 4.047 17 N -0.121 5.121 18 H 0.260 0.740 19 C -0.080 4.080 20 C -0.028 4.028 21 N -0.096 5.096 22 C -0.125 4.125 23 H 0.231 0.769 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.207 0.793 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.535 1.794 -14.438 14.630 hybrid contribution 0.482 0.557 -0.269 0.784 sum -1.053 2.350 -14.707 14.931 Atomic orbital electron populations 1.24760 0.95677 1.00577 1.01679 1.23629 0.94856 1.00179 0.99364 1.19370 0.83906 0.89411 1.01708 1.43432 1.57137 1.09295 1.07587 1.19067 1.38739 1.04215 0.81998 0.87343 1.25381 0.95909 0.98143 0.95117 1.69688 1.41342 1.35049 1.03954 0.87021 0.79926 0.82303 0.80915 1.19929 1.21074 1.18166 1.17258 0.80702 0.85702 0.83120 1.90665 1.51174 1.21270 1.80902 1.20080 1.06007 1.00107 0.94820 1.22340 1.00629 0.98818 0.82906 1.41524 1.37069 1.24262 1.09249 0.74013 1.15208 1.06244 0.96086 0.90430 1.24367 0.93070 0.93022 0.92383 1.81279 1.10345 1.09971 1.08011 1.22037 1.00370 0.99546 0.90568 0.76906 0.89422 0.87926 0.91464 0.79273 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.43 19.25 29.55 0.57 -2.86 15 2 C -0.18 -3.39 11.19 -37.12 -0.42 -3.81 15 3 C 0.18 3.62 4.07 -6.83 -0.03 3.59 15 4 N -0.45 -10.87 2.13 -119.20 -0.25 -11.13 15 5 C -0.31 -8.72 9.40 -14.98 -0.14 -8.87 15 6 H 0.11 3.40 7.90 -52.48 -0.41 2.99 15 7 C 0.06 1.64 5.39 -17.46 -0.09 1.55 15 8 N -0.86 -24.69 13.96 55.50 0.77 -23.91 15 9 Si 0.87 19.73 24.72 -169.99 -4.20 15.53 15 10 H -0.27 -5.79 6.78 56.52 0.38 -5.41 15 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 12 H -0.26 -5.57 7.02 56.52 0.40 -5.17 15 13 C 0.54 12.35 7.56 -12.58 -0.10 12.25 15 14 O -0.56 -14.51 16.86 5.24 0.09 -14.42 15 15 C -0.20 -3.43 5.76 -105.00 -0.60 -4.03 15 16 C 0.09 1.17 11.81 -16.42 -0.19 0.98 15 17 N -0.53 -5.15 6.02 -10.27 -0.06 -5.22 15 18 H 0.42 2.45 8.96 -40.82 -0.37 2.09 15 19 C 0.03 0.39 6.90 -83.98 -0.58 -0.19 15 20 C 0.29 3.65 15.88 -22.48 -0.36 3.29 15 21 N -0.42 -5.97 18.54 41.83 0.78 -5.19 15 22 C -0.10 -1.45 8.20 -39.04 -0.32 -1.77 15 23 H 0.21 2.59 7.80 -54.10 -0.42 2.17 15 24 H 0.09 1.86 3.16 -51.93 -0.16 1.70 15 25 H 0.10 1.78 4.77 -51.93 -0.25 1.53 15 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 27 H 0.19 1.94 8.06 -52.49 -0.42 1.51 15 28 H 0.17 2.53 3.89 -52.49 -0.20 2.33 15 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -33.07 261.38 -2.60 -35.67 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -1.40 Total: 4.59 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.26 Total: 0.14 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 1.23 Total: -45.45 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.09 Total: -14.42 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.20 Total: 15.53 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.07 -2.60 -35.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490987504.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.077 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds