Wall clock time and date at job start Mon Mar 30 2020 18:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47265 * 342.24286 * 3 2 1 5 5 C 1.36970 * 120.00481 * 267.90661 * 4 3 2 6 6 H 1.08008 * 120.00101 * 140.41001 * 5 4 3 7 7 C 1.38972 * 119.99984 * 320.41692 * 5 4 3 8 8 N 1.31415 * 119.99997 * 164.11910 * 7 5 4 9 9 Si 1.86796 * 119.99997 * 344.11405 * 7 5 4 10 10 H 1.48509 * 109.46982 * 95.49172 * 9 7 5 11 11 H 1.48502 * 109.47316 * 215.48913 * 9 7 5 12 12 H 1.48502 * 109.47264 * 335.49418 * 9 7 5 13 13 C 1.34779 * 120.00046 * 87.91019 * 4 3 2 14 14 O 1.21644 * 120.00428 * 185.56557 * 13 4 3 15 15 C 1.47299 * 119.99792 * 5.56085 * 13 4 3 16 16 C 1.38204 * 126.47498 * 155.83543 * 15 13 4 17 17 N 1.34452 * 108.37206 * 180.02562 * 16 15 13 18 18 H 0.97002 * 125.38292 * 179.97438 * 17 16 15 19 19 C 1.37711 * 109.22485 * 359.75609 * 17 16 15 20 20 C 1.43199 * 125.83357 * 180.28250 * 19 17 16 21 21 N 5.58437 * 91.81131 * 94.86773 * 2 1 3 22 22 C 1.36346 * 108.33409 * 0.40545 * 19 17 16 23 23 H 4.40632 * 5.51285 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47092 * 222.24600 * 3 2 1 25 25 H 1.08998 * 109.46914 * 102.24974 * 3 2 1 26 26 H 0.97000 * 120.00215 * 180.02562 * 8 7 5 27 27 H 1.08000 * 125.81242 * 0.03781 * 16 15 13 28 28 H 1.08000 * 126.49268 * 179.87601 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3145 0.4212 5 6 3.4042 -1.5541 1.7426 6 1 3.1448 -2.5057 2.1827 7 6 4.0111 -0.5727 2.5172 8 7 3.9905 -0.6640 3.8280 9 14 4.8562 0.8762 1.6950 10 1 3.9168 2.0245 1.6284 11 1 6.0546 1.2622 2.4824 12 1 5.2688 0.4939 0.3207 13 6 3.3199 -2.2887 -0.4915 14 8 3.6281 -3.4090 -0.1315 15 6 3.1487 -1.9969 -1.9252 16 6 3.7219 -2.6849 -2.9778 17 7 3.3224 -2.1115 -4.1265 18 1 3.5795 -2.3987 -5.0166 19 6 2.4867 -1.0553 -3.8394 20 6 1.8538 -0.2021 -4.7996 21 7 1.3506 0.4736 -5.5614 22 6 2.3670 -0.9591 -2.4846 23 1 -1.0497 -0.0004 -0.0001 24 1 3.0090 0.7616 0.6909 25 1 3.0092 0.2189 -1.0043 26 1 4.4137 0.0212 4.3686 27 1 4.3788 -3.5379 -2.8923 28 1 1.7823 -0.2314 -1.9415 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490987504.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:06 Heat of formation + Delta-G solvation = 110.401622 kcal Electronic energy + Delta-G solvation = -16522.392925 eV Core-core repulsion = 13734.864382 eV Total energy + Delta-G solvation = -2787.528543 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.54344 -40.20098 -37.58676 -37.19074 -34.68143 -33.32757 -32.44412 -30.72843 -28.45123 -27.19343 -23.61226 -23.40153 -21.22513 -20.18048 -19.68294 -18.43046 -17.68834 -17.14125 -16.72099 -16.22629 -15.77155 -15.57207 -15.39196 -14.78328 -14.46296 -14.25954 -14.19348 -14.11437 -13.92796 -13.26611 -13.11828 -12.79179 -12.39306 -11.93341 -11.37540 -11.21575 -11.02084 -10.51682 -10.05651 -9.83846 -9.33812 -8.46161 -6.15602 0.34500 0.92332 1.23431 1.24018 1.36230 1.46102 1.75333 1.90261 2.11553 2.20976 2.30371 2.51849 2.85257 3.01376 3.15261 3.60296 4.02012 4.20507 4.24731 4.28357 4.38477 4.63262 4.94688 5.10656 5.40782 5.52847 5.66750 6.07649 6.26687 6.45073 6.58236 6.72644 6.93670 7.28175 7.86779 8.70494 Molecular weight = 243.07amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.008238 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.524494 B = 3398.069859 C = 3722.552700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.234 4.234 3 C 0.181 3.819 4 N -0.470 5.470 5 C -0.330 4.330 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.915 5.915 9 Si 0.939 3.061 10 H -0.246 1.246 11 H -0.284 1.284 12 H -0.240 1.240 13 C 0.541 3.459 14 O -0.608 6.608 15 C -0.245 4.245 16 C 0.132 3.868 17 N -0.495 5.495 18 H 0.447 0.553 19 C 0.050 3.950 20 C 0.307 3.693 21 N -0.439 5.439 22 C -0.102 4.102 23 H 0.255 0.745 24 H 0.076 0.924 25 H 0.133 0.867 26 H 0.280 0.720 27 H 0.217 0.783 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 2.677 -16.973 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.235 4.235 3 C 0.059 3.941 4 N -0.190 5.190 5 C -0.458 4.458 6 H 0.065 0.935 7 C -0.190 4.190 8 N -0.552 5.552 9 Si 0.762 3.238 10 H -0.172 1.172 11 H -0.211 1.211 12 H -0.163 1.163 13 C 0.333 3.667 14 O -0.493 6.493 15 C -0.254 4.254 16 C -0.012 4.012 17 N -0.091 5.091 18 H 0.290 0.710 19 C -0.062 4.062 20 C -0.008 4.008 21 N -0.117 5.117 22 C -0.130 4.130 23 H 0.271 0.729 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.715 3.213 -17.961 18.327 hybrid contribution 0.408 -0.018 0.739 0.844 sum -1.307 3.194 -17.223 17.565 Atomic orbital electron populations 1.25717 0.96520 0.97629 0.99093 1.23661 0.95269 1.02779 1.01819 1.19419 0.85126 0.86805 1.02701 1.43489 1.58125 1.11140 1.06225 1.18644 1.40197 1.02498 0.84423 0.93460 1.26179 0.95898 1.01493 0.95440 1.69820 1.42739 1.36913 1.05765 0.85943 0.78736 0.78787 0.80341 1.17166 1.21069 1.16307 1.18053 0.78699 0.84537 0.85384 1.90616 1.53140 1.23150 1.82347 1.19582 1.10197 1.03437 0.92223 1.22579 0.98553 0.97806 0.82233 1.41446 1.35139 1.22620 1.09914 0.71013 1.14890 1.05893 0.96190 0.89255 1.24134 0.92437 0.92436 0.91767 1.81325 1.10920 1.10542 1.08901 1.21880 1.00445 0.99168 0.91532 0.72925 0.90640 0.84974 0.91027 0.76685 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.25 19.25 74.32 1.43 -3.82 15 2 C -0.23 -8.64 11.19 31.12 0.35 -8.29 15 3 C 0.18 7.22 4.07 84.57 0.34 7.56 15 4 N -0.47 -23.08 2.13 -649.28 -1.39 -24.46 15 5 C -0.33 -19.52 9.40 84.07 0.79 -18.73 15 6 H 0.05 3.28 7.90 -2.91 -0.02 3.25 15 7 C 0.01 0.66 5.39 84.93 0.46 1.11 15 8 N -0.91 -54.86 13.96 21.67 0.30 -54.55 15 9 Si 0.94 40.99 24.72 68.60 1.70 42.69 15 10 H -0.25 -9.66 6.78 99.48 0.67 -8.99 15 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 12 H -0.24 -9.68 7.02 99.48 0.70 -8.98 15 13 C 0.54 25.11 7.56 86.63 0.65 25.76 15 14 O -0.61 -32.97 16.86 -4.17 -0.07 -33.04 15 15 C -0.25 -7.94 5.76 -20.11 -0.12 -8.06 15 16 C 0.13 2.83 11.81 84.28 1.00 3.83 15 17 N -0.50 -7.36 6.02 -186.40 -1.12 -8.48 15 18 H 0.45 2.71 8.96 -92.71 -0.83 1.88 15 19 C 0.05 1.04 6.90 39.02 0.27 1.30 15 20 C 0.31 6.66 15.88 88.33 1.40 8.06 15 21 N -0.44 -11.11 18.54 19.00 0.35 -10.76 15 22 C -0.10 -2.79 8.20 22.62 0.19 -2.60 15 23 H 0.25 5.16 7.80 -4.43 -0.03 5.13 15 24 H 0.08 3.13 3.16 -2.39 -0.01 3.13 15 25 H 0.13 4.35 4.77 -2.39 -0.01 4.34 15 26 H 0.28 15.36 8.31 -92.71 -0.77 14.59 15 27 H 0.22 3.54 8.06 -2.91 -0.02 3.52 15 28 H 0.16 4.58 3.89 -2.91 -0.01 4.56 15 Total: -1.00 -78.51 261.38 6.90 -71.61 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.37 Total: 10.87 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.76 Total: 6.13 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -1.85 Total: -98.26 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.07 Total: -33.04 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.70 Total: 42.69 kcal Total: -78.51 6.90 -71.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490987504.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.014 kcal (2) G-P(sol) polarization free energy of solvation -78.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds