Wall clock time and date at job start Mon Mar 30 2020 18:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99759 * 2 1 4 4 H 1.48502 * 109.46921 * 270.00105 * 3 2 1 5 5 H 1.48500 * 109.47017 * 30.00115 * 3 2 1 6 6 H 1.48505 * 109.46660 * 150.00077 * 3 2 1 7 7 C 1.37878 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99564 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47006 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47199 * 179.97438 * 11 10 9 13 13 C 1.76199 * 103.00071 * 179.97438 * 12 11 10 14 14 N 1.31248 * 125.61703 * 359.69479 * 13 12 11 15 15 N 1.40436 * 106.75364 * 179.91497 * 14 13 12 16 16 H 0.96999 * 126.75741 * 180.11221 * 15 14 13 17 17 C 1.34349 * 106.48292 * 0.34551 * 15 14 13 18 18 C 1.50699 * 125.88497 * 179.77402 * 17 15 14 19 19 O 1.42892 * 109.47393 * 359.97438 * 18 17 15 20 20 N 1.30865 * 108.22807 * 359.78872 * 17 15 14 21 21 H 0.97002 * 120.00082 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47357 * 59.99864 * 9 7 2 23 23 H 1.09004 * 109.46870 * 299.99972 * 9 7 2 24 24 H 1.08990 * 109.47435 * 60.00012 * 10 9 7 25 25 H 1.09000 * 109.46945 * 299.99661 * 10 9 7 26 26 H 1.08998 * 109.46864 * 60.00035 * 11 10 9 27 27 H 1.09000 * 109.46988 * 299.99630 * 11 10 9 28 28 H 1.09000 * 109.47507 * 119.99610 * 18 17 15 29 29 H 1.09010 * 109.46645 * 239.99323 * 18 17 15 30 30 H 0.96698 * 114.00625 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 16 2.6591 -6.3659 -0.0009 13 6 1.6118 -7.7828 -0.0008 14 7 0.2994 -7.7632 0.0054 15 7 -0.1254 -9.1018 0.0009 16 1 -1.0417 -9.4200 0.0020 17 6 0.9872 -9.8548 -0.0002 18 6 1.0344 -11.3611 0.0001 19 8 -0.2972 -11.8794 0.0023 20 7 2.0229 -9.0549 -0.0012 21 1 -0.4850 0.8401 0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8903 24 1 2.8720 -3.6043 0.8904 25 1 2.8720 -3.6043 -0.8895 26 1 0.8540 -5.0445 -0.8903 27 1 0.8534 -5.0451 0.8897 28 1 1.5583 -11.7084 -0.8904 29 1 1.5605 -11.7079 0.8896 30 1 -0.3434 -12.8453 0.0022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530346162.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:18 Heat of formation + Delta-G solvation = 16.361329 kcal Electronic energy + Delta-G solvation = -14234.794721 eV Core-core repulsion = 11578.632236 eV Total energy + Delta-G solvation = -2656.162485 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.078 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.15740 -37.52184 -34.48229 -32.59243 -32.14366 -31.89380 -27.68254 -27.14952 -23.59307 -22.98408 -21.24649 -20.21661 -18.43879 -17.88276 -16.51619 -16.33277 -16.05847 -15.15938 -14.88945 -14.55150 -14.45647 -13.80133 -13.12295 -12.51514 -11.99132 -11.88085 -11.81806 -11.16093 -11.06121 -10.88678 -10.63201 -10.59121 -10.42915 -9.99974 -9.85935 -9.76471 -9.33999 -9.10757 -8.35312 -7.52188 -6.00153 -4.02960 1.32557 1.37804 2.32146 2.60216 2.84923 3.17275 3.33577 3.39639 3.43417 4.32412 4.46700 4.69968 4.77133 4.93183 5.35752 5.51843 5.60222 5.70084 6.06965 6.13379 6.51672 6.68218 6.80843 6.91071 6.99561 7.65199 7.76589 7.78283 7.98674 8.39391 9.03539 9.61190 11.11146 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.077174 B = 0.003500 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.728298 B = 7999.219874 C = 8330.895646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.096 4.096 11 C -0.100 4.100 12 S 0.003 5.997 13 C 0.217 3.783 14 N -0.312 5.312 15 N -0.462 5.462 16 H 0.445 0.555 17 C 0.284 3.716 18 C 0.160 3.840 19 O -0.577 6.577 20 N -0.517 5.517 21 H 0.261 0.739 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -23.773 -0.001 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.136 4.136 11 C -0.249 4.249 12 S 0.231 5.769 13 C -0.172 4.172 14 N -0.147 5.147 15 N -0.181 5.181 16 H 0.292 0.708 17 C 0.003 3.997 18 C 0.079 3.921 19 O -0.384 6.384 20 N -0.249 5.249 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.591 -22.464 0.008 22.520 hybrid contribution -1.540 -0.213 -0.012 1.555 sum 0.051 -22.677 -0.004 22.677 Atomic orbital electron populations 1.69971 1.06083 1.26682 1.50712 1.25028 0.94861 0.99314 0.95251 0.86564 0.79845 0.83308 0.78122 1.20633 1.21239 1.19789 1.21216 0.93152 0.90789 1.50803 0.92435 1.19092 0.93720 0.90503 0.97675 1.21517 0.99384 0.90827 1.01824 1.23982 1.00056 0.94652 1.06180 1.85674 1.08877 0.90464 1.91886 1.26261 0.92623 0.97577 1.00780 1.78518 1.11673 0.95633 1.28827 1.47764 1.10201 1.03874 1.56287 0.70830 1.23952 0.83305 0.95486 0.96926 1.20291 0.84702 0.83601 1.03493 1.86287 1.26356 1.27835 1.97950 1.70425 1.29227 0.99053 1.26183 0.92955 0.96245 0.96220 0.92032 0.92043 0.89413 0.89404 0.89303 0.89305 0.75050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.76 4.97 -27.89 -0.14 0.62 16 10 C -0.10 -1.98 5.16 -26.73 -0.14 -2.12 16 11 C -0.10 -1.83 5.56 37.16 0.21 -1.62 16 12 S 0.00 0.04 22.16 -107.50 -2.38 -2.34 16 13 C 0.22 3.71 8.28 -90.96 -0.75 2.96 16 14 N -0.31 -5.24 12.36 30.13 0.37 -4.87 16 15 N -0.46 -5.95 7.27 32.61 0.24 -5.72 16 16 H 0.45 4.44 8.61 -182.34 -1.57 2.87 16 17 C 0.28 3.42 8.03 -155.74 -1.25 2.17 16 18 C 0.16 0.99 7.67 36.01 0.28 1.26 16 19 O -0.58 -2.85 13.18 -35.23 -0.46 -3.31 16 20 N -0.52 -7.97 11.21 -10.96 -0.12 -8.09 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.40 -0.12 9.12 45.56 0.42 0.30 16 LS Contribution 283.48 15.07 4.27 4.27 Total: -1.00 -34.52 283.48 -8.66 -43.18 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.08 Total: -3.28 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.21 Total: -10.26 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 1.22 Total: -44.97 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.46 Total: -3.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.38 Total: -2.34 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.52 -8.66 -43.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530346162.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.546 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds