Wall clock time and date at job start Mon Mar 30 2020 18:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39462 * 119.73416 * 211.18901 * 3 2 1 5 5 C 1.38489 * 119.04766 * 180.02562 * 4 3 2 6 6 C 1.50702 * 120.74132 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47215 * 89.99851 * 6 5 4 8 8 C 1.47961 * 111.00005 * 169.99576 * 7 6 5 9 9 C 1.53934 * 86.17939 * 137.58072 * 8 7 6 10 10 C 1.50703 * 113.73399 * 221.81705 * 9 8 7 11 11 H 1.07999 * 119.99920 * 358.09577 * 10 9 8 12 12 C 1.37877 * 119.99669 * 178.10223 * 10 9 8 13 13 N 1.31510 * 120.00506 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99624 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47263 * 89.99888 * 14 12 10 16 16 H 1.48497 * 109.47123 * 209.99934 * 14 12 10 17 17 H 1.48502 * 109.47383 * 330.00011 * 14 12 10 18 18 C 1.48296 * 111.00409 * 269.34877 * 7 6 5 19 19 C 1.38693 * 118.50702 * 0.26951 * 5 4 3 20 20 C 1.38462 * 119.38248 * 359.43646 * 19 5 4 21 21 N 1.31588 * 120.91696 * 0.58367 * 20 19 5 22 22 H 1.08000 * 120.47538 * 0.02562 * 4 3 2 23 23 H 1.09001 * 109.47251 * 329.99427 * 6 5 4 24 24 H 1.09004 * 109.46551 * 209.99793 * 6 5 4 25 25 H 1.09007 * 113.75652 * 23.26342 * 8 7 6 26 26 H 1.08993 * 113.76177 * 251.90248 * 8 7 6 27 27 H 1.09002 * 113.73279 * 90.64057 * 9 8 7 28 28 H 0.96995 * 120.00309 * 180.02562 * 13 12 10 29 29 H 1.09001 * 113.86054 * 108.14174 * 18 7 6 30 30 H 1.09000 * 113.76062 * 336.68481 * 18 7 6 31 31 H 1.08004 * 120.30465 * 179.72998 * 19 5 4 32 32 H 1.08002 * 119.54430 * 180.31650 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2593 1.0369 0.6271 5 6 4.6441 1.0236 0.6181 6 6 5.4294 2.1238 1.2845 7 7 5.6854 1.7632 2.6854 8 6 6.6507 2.6976 3.3055 9 6 5.7290 2.6692 4.5381 10 6 5.5238 4.0204 5.1732 11 1 6.0302 4.8870 4.7746 12 6 4.6894 4.1502 6.2632 13 7 4.0732 3.0948 6.7490 14 14 4.4355 5.8249 7.0508 15 1 3.2867 6.5075 6.4032 16 1 4.1570 5.6536 8.4993 17 1 5.6611 6.6451 6.8760 18 6 4.6043 2.2628 3.5689 19 6 5.2919 -0.0222 -0.0225 20 6 4.5424 -1.0215 -0.6198 21 7 3.2272 -0.9854 -0.5971 22 1 2.7224 1.8383 1.1129 23 1 4.8589 3.0518 1.2465 24 1 6.3781 2.2589 0.7649 25 1 6.6980 3.6698 2.8147 26 1 7.6335 2.2606 3.4818 27 1 5.9866 1.8949 5.2607 28 1 3.4859 3.1862 7.5155 29 1 3.9532 1.4788 3.9557 30 1 4.0543 3.1081 3.1552 31 1 6.3709 -0.0591 -0.0510 32 1 5.0441 -1.8398 -1.1149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237459685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:49 Heat of formation + Delta-G solvation = 99.840017 kcal Electronic energy + Delta-G solvation = -16172.762212 eV Core-core repulsion = 13520.608778 eV Total energy + Delta-G solvation = -2652.153434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50924 -38.72977 -36.58008 -33.95238 -32.47646 -31.67956 -29.14427 -26.03486 -25.19212 -24.53606 -23.45250 -21.83943 -18.71126 -18.65790 -16.79631 -16.68066 -16.12755 -15.16363 -14.91868 -14.67236 -14.39389 -14.03590 -13.83774 -13.32382 -12.88219 -12.85913 -12.68629 -12.06000 -11.95919 -11.79439 -11.28457 -11.02945 -10.71605 -10.42433 -10.11832 -9.86244 -9.68667 -9.25961 -9.16901 -9.10037 -8.52596 -8.07616 -6.12245 -4.17713 0.52272 1.10224 2.47756 2.78041 3.23967 3.32038 3.33979 3.44670 3.81799 4.34153 4.49425 4.56322 4.83617 4.89122 4.98633 5.17981 5.18476 5.37852 5.58766 5.68621 5.82173 5.94854 6.19869 6.24186 6.34645 6.42631 6.51996 6.62809 7.01805 7.05019 7.29176 7.63738 7.63996 7.78867 7.91671 8.27011 8.85105 9.48195 10.97047 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.005327 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.735664 B = 5255.033156 C = 5984.003757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.273 3.727 3 C 0.184 3.816 4 C -0.108 4.108 5 C -0.013 4.013 6 C 0.051 3.949 7 N -0.486 5.486 8 C 0.000 4.000 9 C 0.039 3.961 10 C -0.521 4.521 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.011 3.989 19 C -0.130 4.130 20 C 0.104 3.896 21 N -0.460 5.460 22 H 0.144 0.856 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -3.963 -12.858 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.045 4.045 3 C 0.046 3.954 4 C -0.132 4.132 5 C -0.022 4.022 6 C -0.077 4.077 7 N -0.209 5.209 8 C -0.129 4.129 9 C 0.020 3.980 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.522 5.522 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.117 4.117 19 C -0.151 4.151 20 C -0.055 4.055 21 N -0.171 5.171 22 H 0.161 0.839 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.573 -5.383 -13.155 14.301 hybrid contribution 0.448 2.337 0.786 2.506 sum 2.021 -3.047 -12.369 12.898 Atomic orbital electron populations 1.81224 1.11604 1.07131 1.07508 1.25038 0.91761 0.93758 0.93897 1.16258 0.85937 0.93556 0.99610 1.21995 0.94692 0.98624 0.97846 1.20276 0.92799 0.95951 0.93150 1.21691 0.98764 0.93624 0.93651 1.68639 1.08807 1.44991 0.98479 1.24104 0.96926 0.93642 0.98180 1.20301 0.89204 0.97484 0.90990 1.21067 1.27666 0.93329 1.13871 0.92396 1.25009 0.95586 0.96537 0.96440 1.69953 1.29228 1.28760 1.24281 0.86629 0.78565 0.84356 0.78673 1.20652 1.21117 1.19798 1.24250 0.95573 0.97238 0.94675 1.22305 1.02116 0.93938 0.96707 1.22708 0.88179 0.97917 0.96739 1.67479 1.10759 1.23030 1.15822 0.83861 0.92486 0.90096 0.92415 0.91316 0.92233 0.92779 0.91294 0.92508 0.83880 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.35 18.54 41.84 0.78 -5.57 16 2 C 0.27 3.95 15.53 -22.47 -0.35 3.60 16 3 C 0.18 2.45 6.58 -85.07 -0.56 1.89 16 4 C -0.11 -1.40 9.50 -39.03 -0.37 -1.77 16 5 C -0.01 -0.17 5.47 -104.36 -0.57 -0.74 16 6 C 0.05 0.70 4.97 -4.97 -0.02 0.68 16 7 N -0.49 -8.59 6.15 -239.48 -1.47 -10.06 16 8 C 0.00 0.00 7.50 -2.76 -0.02 -0.03 16 9 C 0.04 0.92 3.60 -90.84 -0.33 0.59 16 10 C -0.52 -13.45 8.77 -34.44 -0.30 -13.75 16 11 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 14 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.01 0.23 7.53 -2.57 -0.02 0.21 16 19 C -0.13 -1.34 9.81 -39.33 -0.39 -1.72 16 20 C 0.10 1.05 11.18 -17.57 -0.20 0.85 16 21 N -0.46 -5.90 10.28 -11.16 -0.11 -6.01 16 22 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 23 H 0.06 0.80 7.34 -51.93 -0.38 0.41 16 24 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 25 H 0.06 1.04 7.88 -51.92 -0.41 0.63 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.06 1.19 7.43 -51.93 -0.39 0.80 16 31 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -28.77 290.43 -7.62 -36.39 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.68 Total: -2.00 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.22 Total: -8.49 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.08 Total: -45.66 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.77 -7.62 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237459685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.226 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds