Wall clock time and date at job start Mon Mar 30 2020 18:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72561 * 11 10 9 14 14 C 1.47422 * 125.65007 * 359.68582 * 13 11 10 15 15 C 1.55127 * 104.72145 * 155.81775 * 14 13 11 16 16 H 1.08997 * 111.19644 * 279.19709 * 15 14 13 17 17 O 1.42904 * 110.93647 * 155.28966 * 15 14 13 18 18 C 1.55163 * 101.48383 * 37.30287 * 15 14 13 19 19 H 1.08993 * 110.72218 * 82.69114 * 18 15 14 20 20 C 1.53002 * 110.72011 * 205.96764 * 18 15 14 21 21 O 1.42895 * 109.47254 * 179.97438 * 20 18 15 22 22 C 1.47026 * 125.64547 * 180.02562 * 13 11 10 23 23 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 25 25 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 26 26 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 27 27 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 28 28 H 1.08994 * 110.37063 * 274.75060 * 14 13 11 29 29 H 1.09008 * 110.36295 * 37.07780 * 14 13 11 30 30 H 0.96698 * 113.99788 * 67.96726 * 17 15 14 31 31 H 1.09004 * 109.46788 * 299.97821 * 20 18 15 32 32 H 1.09004 * 109.47240 * 59.97182 * 20 18 15 33 33 H 0.96704 * 113.99788 * 179.97438 * 21 20 18 34 34 H 1.08999 * 109.88342 * 300.43339 * 22 13 11 35 35 H 1.09000 * 109.88440 * 61.45040 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9673 -0.0020 12 8 0.2788 -4.9672 -0.0020 13 7 2.1655 -6.1344 -0.0075 14 6 3.6325 -6.2795 -0.0198 15 6 3.8952 -7.6803 0.5928 16 1 3.8503 -7.6490 1.6814 17 8 5.1485 -8.2046 0.1494 18 6 2.7127 -8.4989 0.0106 19 1 2.9408 -8.8417 -0.9985 20 6 2.3718 -9.6802 0.9213 21 8 1.2810 -10.4141 0.3613 22 6 1.5592 -7.4738 -0.0092 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5564 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8712 -3.6048 0.8890 27 1 2.8725 -3.6040 -0.8909 28 1 4.0097 -6.2329 -1.0414 29 1 4.0954 -5.5054 0.5922 30 1 5.9171 -7.7253 0.4877 31 1 3.2406 -10.3323 1.0109 32 1 2.0923 -9.3098 1.9076 33 1 1.0108 -11.1793 0.8871 34 1 0.9362 -7.5999 0.8764 35 1 0.9570 -7.6071 -0.9079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299171158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:32 Heat of formation + Delta-G solvation = -174.784745 kcal Electronic energy + Delta-G solvation = -17574.792262 eV Core-core repulsion = 14571.128533 eV Total energy + Delta-G solvation = -3003.663729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.130 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.29658 -39.41775 -37.51598 -36.47691 -35.59784 -33.39129 -32.39916 -29.54069 -28.26245 -26.42722 -24.08130 -23.17969 -21.42235 -20.26147 -18.92154 -18.60164 -18.16739 -17.66631 -16.96476 -16.64640 -16.44652 -15.92520 -15.47772 -14.95738 -14.66993 -14.40426 -14.22299 -13.80067 -13.75126 -13.58067 -13.19627 -12.82371 -12.74208 -12.47675 -12.18247 -11.96976 -11.77022 -11.59752 -11.33068 -11.21373 -10.92161 -10.74932 -10.57597 -9.75757 -8.18363 -6.33047 1.42567 1.45690 1.56538 1.59732 1.87222 2.43120 2.97579 3.14770 3.15607 3.38626 3.81355 3.88262 4.00721 4.16980 4.26477 4.37008 4.43590 4.46710 4.51348 4.59892 4.75261 4.77592 4.84340 4.98445 5.11957 5.28343 5.48629 5.59379 5.83288 6.15508 6.38743 6.85053 6.87023 6.90999 7.15710 7.37491 8.94610 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042824 B = 0.004453 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.689142 B = 6286.759778 C = 6852.765665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.041 3.959 10 C -0.109 4.109 11 C 0.522 3.478 12 O -0.589 6.589 13 N -0.622 5.622 14 C 0.064 3.936 15 C 0.115 3.885 16 H 0.099 0.901 17 O -0.561 6.561 18 C -0.088 4.088 19 H 0.091 0.909 20 C 0.091 3.909 21 O -0.595 6.595 22 C 0.115 3.885 23 H 0.263 0.737 24 H -0.020 1.020 25 H -0.017 1.017 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.405 0.595 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.755 -19.604 3.808 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.149 4.149 11 C 0.313 3.687 12 O -0.469 6.469 13 N -0.358 5.358 14 C -0.059 4.059 15 C 0.055 3.945 16 H 0.117 0.883 17 O -0.370 6.370 18 C -0.107 4.107 19 H 0.109 0.891 20 C 0.013 3.987 21 O -0.404 6.404 22 C -0.007 4.007 23 H 0.072 0.928 24 H -0.002 1.002 25 H 0.001 0.999 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.257 0.743 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.250 0.750 34 H 0.080 0.920 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.617 -19.403 3.055 23.345 hybrid contribution -0.211 0.927 0.460 1.056 sum 12.405 -18.476 3.515 22.530 Atomic orbital electron populations 1.70185 1.08431 1.27864 1.51397 1.26168 0.95711 1.04053 0.94536 0.85285 0.78712 0.77514 0.78512 1.19776 1.21213 1.17634 1.21692 0.94049 0.91388 1.50934 0.90358 1.18712 0.93723 0.92548 0.94675 1.21607 0.99204 0.89362 1.04714 1.21229 0.87391 0.85672 0.74360 1.90660 1.16674 1.87816 1.51770 1.48500 1.08632 1.04984 1.73647 1.23349 0.79235 0.99940 1.03330 1.22747 0.83941 0.89568 0.98276 0.88302 1.86484 1.15442 1.58897 1.76141 1.22169 0.92732 0.93864 1.01975 0.89069 1.22126 0.89757 0.92031 0.94795 1.86456 1.53000 1.46651 1.54284 1.21919 0.96291 0.80970 1.01539 0.92835 1.00197 0.99863 0.87422 0.88006 0.89838 0.87731 0.74330 0.90861 0.92215 0.74956 0.91968 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.14 13.29 21.45 0.28 -59.86 16 2 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 3 Si 0.98 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.34 4.26 29.85 0.13 2.46 16 10 C -0.11 -4.52 4.64 29.85 0.14 -4.38 16 11 C 0.52 21.83 7.85 87.66 0.69 22.52 16 12 O -0.59 -31.11 16.31 -3.04 -0.05 -31.16 16 13 N -0.62 -19.08 3.32 -811.35 -2.70 -21.77 16 14 C 0.06 1.26 6.44 86.93 0.56 1.82 16 15 C 0.11 1.72 3.89 32.06 0.12 1.84 16 16 H 0.10 1.14 8.05 -2.39 -0.02 1.12 16 17 O -0.56 -6.93 13.47 -148.98 -2.01 -8.94 16 18 C -0.09 -1.73 2.97 -9.60 -0.03 -1.76 16 19 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 20 C 0.09 1.38 6.36 71.98 0.46 1.84 16 21 O -0.59 -10.50 13.50 -148.98 -2.01 -12.51 16 22 C 0.12 3.24 6.32 86.73 0.55 3.79 16 23 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 24 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 25 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 26 H 0.11 3.81 7.87 -2.39 -0.02 3.79 16 27 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.10 1.69 7.49 -2.38 -0.02 1.68 16 30 H 0.41 1.29 9.12 -74.06 -0.68 0.61 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.79 8.06 -2.39 -0.02 0.77 16 33 H 0.40 3.10 9.12 -74.05 -0.68 2.42 16 34 H 0.06 1.83 7.77 -2.39 -0.02 1.81 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -83.99 298.45 -1.40 -85.38 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -0.25 Total: 5.25 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 3.31 Total: -2.63 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -2.41 Total: -81.63 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -4.07 Total: -52.61 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -83.99 -1.40 -85.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299171158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.401 kcal (2) G-P(sol) polarization free energy of solvation -83.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds