Wall clock time and date at job start Mon Mar 30 2020 18:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47024 * 2 1 4 4 C 1.46496 * 120.00289 * 93.83573 * 3 2 1 5 5 C 1.50706 * 109.47331 * 92.39650 * 4 3 2 6 6 H 1.07995 * 119.99637 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99903 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00211 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99904 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46997 * 270.00049 * 9 7 5 11 11 H 1.48508 * 109.47225 * 29.99669 * 9 7 5 12 12 H 1.48494 * 109.47448 * 149.99816 * 9 7 5 13 13 C 1.34775 * 120.00026 * 273.83099 * 3 2 1 14 14 O 1.21280 * 119.99866 * 5.08941 * 13 3 2 15 15 C 1.50704 * 120.00170 * 185.09258 * 13 3 2 16 16 H 1.08997 * 109.52173 * 40.74922 * 15 13 3 17 17 C 1.53144 * 109.52275 * 280.61780 * 15 13 3 18 18 O 1.43076 * 109.14866 * 184.78795 * 17 15 13 19 19 C 1.43074 * 113.59508 * 57.95141 * 18 17 15 20 20 C 1.53144 * 109.15188 * 302.04680 * 19 18 17 21 21 O 1.43074 * 109.52469 * 160.94460 * 15 13 3 22 22 H 1.08997 * 109.47475 * 300.00795 * 1 2 3 23 23 H 1.09005 * 109.46701 * 60.00413 * 1 2 3 24 24 H 1.08998 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47024 * 239.99353 * 2 1 3 26 26 H 1.08997 * 109.46476 * 119.99852 * 2 1 3 27 27 H 1.09004 * 109.47167 * 332.39905 * 4 3 2 28 28 H 1.08997 * 109.47512 * 212.39667 * 4 3 2 29 29 H 0.96995 * 119.99913 * 359.97438 * 8 7 5 30 30 H 1.09003 * 109.52092 * 304.68328 * 17 15 13 31 31 H 1.08993 * 109.52520 * 64.88172 * 17 15 13 32 32 H 1.09001 * 109.52476 * 61.95007 * 19 18 17 33 33 H 1.09006 * 109.52285 * 182.14567 * 19 18 17 34 34 H 1.08993 * 109.52520 * 175.21651 * 20 19 18 35 35 H 1.09003 * 109.52092 * 295.41496 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3425 2.0435 1.2658 5 6 3.8044 1.8477 1.5753 6 1 4.4295 1.2864 0.8967 7 6 4.3437 2.3852 2.7248 8 7 3.5825 3.0692 3.5509 9 14 6.1558 2.1431 3.1080 10 1 6.3320 0.9012 3.9029 11 1 6.9195 2.0313 1.8393 12 1 6.6566 3.3043 3.8865 13 6 2.1694 2.0425 -1.1646 14 8 1.8148 1.5285 -2.2042 15 6 2.7791 3.4207 -1.1749 16 1 3.6167 3.4536 -0.4783 17 6 1.7248 4.4498 -0.7569 18 8 2.2782 5.7638 -0.8768 19 6 2.7389 6.0729 -2.1956 20 6 3.7931 5.0438 -2.6137 21 8 3.2398 3.7298 -2.4937 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7409 1.6124 2.0660 28 1 2.1281 3.1090 1.1837 29 1 2.6418 3.1958 3.3513 30 1 0.8526 4.3614 -1.4046 31 1 1.4314 4.2711 0.2775 32 1 1.9007 6.0391 -2.8916 33 1 3.1798 7.0698 -2.2031 34 1 4.0866 5.2225 -3.6480 35 1 4.6654 5.1322 -1.9660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055301621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:14 Heat of formation + Delta-G solvation = -126.808639 kcal Electronic energy + Delta-G solvation = -18827.106166 eV Core-core repulsion = 15825.522838 eV Total energy + Delta-G solvation = -3001.583328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15224 -38.55434 -35.86914 -35.26280 -33.12038 -31.84598 -30.15667 -27.78721 -26.66377 -24.81153 -23.14882 -22.85318 -21.20201 -18.88937 -17.39439 -16.83522 -16.43175 -16.12517 -15.86638 -15.15972 -14.96886 -14.39432 -13.90859 -13.79394 -13.28332 -13.15512 -12.96100 -12.48482 -12.36967 -11.95250 -11.62069 -11.58468 -11.29793 -11.02415 -10.77469 -10.60378 -10.41253 -10.29364 -10.21094 -9.32525 -9.13230 -8.90803 -8.56071 -7.79457 -6.57144 -4.34216 3.04493 3.34363 3.37428 3.39859 3.53578 3.89626 4.28882 4.40362 4.78988 5.03363 5.14447 5.15454 5.22646 5.33122 5.40986 5.54916 5.63378 5.69044 5.77449 5.79133 5.91350 6.09250 6.14446 6.27899 6.48915 6.52645 6.74287 7.10553 7.14367 7.36457 7.77344 8.00870 8.31502 8.59589 8.81173 9.36981 10.78936 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.010495 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.600921 B = 2667.299933 C = 3693.568569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.589 5.589 4 C 0.218 3.782 5 C -0.622 4.622 6 H 0.057 0.943 7 C 0.026 3.974 8 N -0.900 5.900 9 Si 1.070 2.930 10 H -0.286 1.286 11 H -0.287 1.287 12 H -0.282 1.282 13 C 0.528 3.472 14 O -0.550 6.550 15 C 0.038 3.962 16 H 0.114 0.886 17 C 0.040 3.960 18 O -0.371 6.371 19 C 0.021 3.979 20 C 0.024 3.976 21 O -0.358 6.358 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.269 0.731 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 2.432 -6.995 7.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.661 4.661 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.535 5.535 9 Si 0.898 3.102 10 H -0.212 1.212 11 H -0.213 1.213 12 H -0.207 1.207 13 C 0.315 3.685 14 O -0.429 6.429 15 C -0.023 4.023 16 H 0.132 0.868 17 C -0.037 4.037 18 O -0.289 6.289 19 C -0.056 4.056 20 C -0.053 4.053 21 O -0.277 6.277 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.502 2.507 -6.407 7.042 hybrid contribution -1.091 -0.346 -1.005 1.523 sum -2.593 2.161 -7.412 8.144 Atomic orbital electron populations 1.22125 0.96683 1.01488 1.02005 1.21268 0.93529 0.82990 1.02625 1.47980 1.63333 1.13460 1.07295 1.19714 0.97278 0.92800 0.80379 1.22337 0.94173 1.39194 1.10377 0.92480 1.25824 1.06577 0.93105 0.92446 1.70808 1.07971 1.37177 1.37572 0.83508 0.74002 0.76780 0.75923 1.21239 1.21319 1.20740 1.19737 0.78650 0.86510 0.83649 1.90611 1.50763 1.69299 1.32219 1.22678 0.99570 0.93433 0.86592 0.86813 1.23224 0.94579 0.82171 1.03744 1.88140 1.80428 1.31296 1.29063 1.23264 0.97501 0.99386 0.85416 1.23266 0.96045 0.83216 1.02820 1.88131 1.80192 1.31166 1.28168 0.92710 0.92528 0.92176 0.91148 0.90159 0.95124 0.95130 0.92066 0.92311 0.86595 0.92342 0.87854 0.87803 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.22 37.16 0.38 -2.21 16 2 C 0.12 2.20 6.04 -4.04 -0.02 2.17 16 3 N -0.59 -12.51 2.47 -175.06 -0.43 -12.95 16 4 C 0.22 5.02 4.10 -5.19 -0.02 5.00 16 5 C -0.62 -16.08 8.44 -34.44 -0.29 -16.37 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 8 N -0.90 -25.07 13.65 55.43 0.76 -24.32 16 9 Si 1.07 23.89 29.90 -169.99 -5.08 18.80 16 10 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.53 11.65 6.91 -10.98 -0.08 11.58 16 14 O -0.55 -13.22 16.31 -13.54 -0.22 -13.44 16 15 C 0.04 0.78 2.44 -27.81 -0.07 0.71 16 16 H 0.11 2.55 6.72 -51.93 -0.35 2.20 16 17 C 0.04 0.73 6.10 37.23 0.23 0.96 16 18 O -0.37 -6.50 10.85 -48.80 -0.53 -7.03 16 19 C 0.02 0.29 7.05 37.23 0.26 0.56 16 20 C 0.02 0.35 7.05 37.23 0.26 0.61 16 21 O -0.36 -7.05 10.10 -62.16 -0.63 -7.67 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.32 7.62 -51.93 -0.40 0.92 16 26 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 27 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 28 H 0.03 0.71 4.49 -51.93 -0.23 0.48 16 29 H 0.27 7.34 7.22 -40.82 -0.29 7.05 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.12 2.14 5.77 -51.93 -0.30 1.84 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 289.12 15.07 4.36 4.36 Total: -1.00 -30.75 289.12 -6.21 -36.96 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.99 Total: 1.67 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 0.55 Total: 3.61 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.32 Total: -37.26 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.38 Total: -28.14 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.08 Total: 18.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.75 -6.21 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055301621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.845 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds