Wall clock time and date at job start Mon Mar 30 2020 18:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.62932 * 2 1 4 4 S 1.81902 * 109.79321 * 239.50864 * 2 1 3 5 5 C 1.81893 * 101.91440 * 188.89401 * 4 2 1 6 6 C 1.53249 * 108.50807 * 51.30348 * 5 4 2 7 7 N 1.46472 * 109.85885 * 297.99595 * 6 5 4 8 8 C 1.46896 * 111.00092 * 197.76200 * 7 6 5 9 9 C 1.53000 * 109.47445 * 298.88881 * 8 7 6 10 10 C 1.52999 * 109.47361 * 176.04221 * 9 8 7 11 11 C 1.50701 * 109.47174 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99858 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99810 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99738 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47298 * 90.00004 * 15 13 11 17 17 H 1.48501 * 109.47056 * 210.00190 * 15 13 11 18 18 H 1.48497 * 109.47352 * 329.99927 * 15 13 11 19 19 C 1.46478 * 112.55640 * 72.65778 * 7 6 5 20 20 H 1.08998 * 109.40807 * 47.46115 * 19 7 6 21 21 C 1.53001 * 109.40506 * 167.30560 * 19 7 6 22 22 H 1.09002 * 109.47113 * 299.60776 * 1 2 3 23 23 H 1.08998 * 109.47036 * 59.60015 * 1 2 3 24 24 H 1.08997 * 109.47455 * 179.60690 * 1 2 3 25 25 H 1.08997 * 109.63186 * 171.01013 * 5 4 2 26 26 H 1.09007 * 109.63292 * 291.39975 * 5 4 2 27 27 H 1.08997 * 109.41150 * 177.87840 * 6 5 4 28 28 H 1.09001 * 109.40608 * 58.11213 * 6 5 4 29 29 H 1.09003 * 109.47446 * 178.88924 * 8 7 6 30 30 H 1.09001 * 109.46669 * 58.89084 * 8 7 6 31 31 H 1.08999 * 109.47219 * 56.04451 * 9 8 7 32 32 H 1.08999 * 109.46785 * 296.04327 * 9 8 7 33 33 H 1.09001 * 109.47378 * 300.00584 * 10 9 8 34 34 H 1.09009 * 109.46860 * 60.00028 * 10 9 8 35 35 H 0.97005 * 120.00010 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.47378 * 54.91870 * 21 19 7 37 37 H 1.08998 * 109.47017 * 174.92854 * 21 19 7 38 38 H 1.09006 * 109.46794 * 294.92251 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 16 2.1460 -0.8685 -1.4749 5 6 3.9276 -0.9827 -1.1266 6 6 4.1124 -1.5777 0.2735 7 7 3.5089 -0.6938 1.2734 8 6 4.0169 -0.9959 2.6182 9 6 3.6562 -2.4359 2.9883 10 6 4.2696 -2.7825 4.3464 11 6 3.9137 -4.2008 4.7111 12 1 3.3108 -4.7956 4.0410 13 6 4.3579 -4.7389 5.9003 14 7 5.0917 -4.0144 6.7164 15 14 3.9174 -6.4971 6.3520 16 1 4.9604 -7.4178 5.8327 17 1 3.8369 -6.6232 7.8295 18 1 2.6047 -6.8480 5.7531 19 6 2.0448 -0.7303 1.2450 20 1 1.7087 -1.7669 1.2217 21 6 1.4949 -0.0455 2.4978 22 1 -0.3633 0.5077 0.8935 23 1 -0.3633 0.5200 -0.8864 24 1 -0.3634 -1.0276 -0.0071 25 1 4.4043 -1.6279 -1.8645 26 1 4.3732 0.0113 -1.1670 27 1 5.1764 -1.6879 0.4827 28 1 3.6327 -2.5555 0.3177 29 1 3.5675 -0.3122 3.3385 30 1 5.1004 -0.8776 2.6322 31 1 4.0462 -3.1146 2.2297 32 1 2.5722 -2.5363 3.0429 33 1 5.3536 -2.6820 4.2918 34 1 3.8795 -2.1038 5.1050 35 1 5.4040 -4.3929 7.5533 36 1 1.9049 0.9618 2.5710 37 1 0.4080 0.0082 2.4351 38 1 1.7800 -0.6188 3.3800 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118419851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:49 Heat of formation + Delta-G solvation = -14.729855 kcal Electronic energy + Delta-G solvation = -16189.968945 eV Core-core repulsion = 13771.831683 eV Total energy + Delta-G solvation = -2418.137262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.07459 -34.57297 -33.54862 -32.01222 -30.15570 -28.36706 -26.34757 -24.60694 -23.15687 -21.67831 -20.84577 -19.09966 -16.70235 -16.34447 -16.02849 -15.20971 -14.98687 -14.45236 -14.01014 -13.84843 -13.53377 -12.67708 -12.58178 -12.35086 -12.30207 -12.04419 -11.91358 -11.78732 -11.46310 -11.08653 -11.02081 -10.79813 -10.62751 -10.56523 -10.47351 -9.70256 -9.65155 -9.44980 -9.20251 -8.37584 -8.01784 -7.64912 -6.02406 -4.05067 1.78227 2.53703 3.29709 3.36115 3.39520 3.93169 4.43797 4.67368 4.87857 5.01661 5.12952 5.21534 5.29643 5.33230 5.40452 5.46419 5.54783 5.66829 5.77200 5.80381 5.83341 5.87605 5.98029 6.03252 6.19486 6.25629 6.28820 6.55182 6.75681 6.98909 7.28548 7.32441 7.63291 7.77149 7.96774 8.40142 9.01791 9.59310 11.08599 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.005106 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.699619 B = 5482.457398 C = 5596.075232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 H 0.092 0.908 4 S -0.287 6.287 5 C -0.071 4.071 6 C 0.054 3.946 7 N -0.549 5.549 8 C 0.053 3.947 9 C -0.144 4.144 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.087 3.913 20 H 0.057 0.943 21 C -0.154 4.154 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 8.940 -13.140 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 H 0.111 0.889 4 S -0.059 6.059 5 C -0.220 4.220 6 C -0.075 4.075 7 N -0.273 5.273 8 C -0.074 4.074 9 C -0.183 4.183 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.071 0.929 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.023 4.023 20 H 0.075 0.925 21 C -0.213 4.213 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.051 9.040 -14.031 17.754 hybrid contribution 0.364 -1.423 1.500 2.100 sum -5.687 7.616 -12.531 15.728 Atomic orbital electron populations 1.21707 0.92038 1.03103 1.02579 1.23246 0.98615 1.01271 0.93317 0.88941 1.86783 1.08987 1.78268 1.31856 1.23501 0.93564 1.04958 0.99931 1.22174 1.00746 0.94715 0.89882 1.61519 1.05831 1.53430 1.06507 1.22423 1.00064 0.97307 0.87612 1.22248 1.00398 0.94664 1.00963 1.19014 0.95838 0.96288 0.90080 1.21246 1.32452 0.98293 1.03924 0.92919 1.25015 0.95166 0.97712 0.96477 1.69960 1.35975 1.36501 1.11011 0.86620 0.78862 0.85143 0.77566 1.20650 1.21163 1.19919 1.21728 0.87998 0.98603 0.93967 0.92534 1.22129 1.00615 1.01337 0.97237 0.90588 0.91917 0.91671 0.87900 0.89359 0.89644 0.92973 0.90284 0.91041 0.93383 0.93298 0.96667 0.96637 0.92995 0.91892 0.91866 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.84 37.16 0.33 -1.04 16 2 C -0.04 -0.43 2.87 -26.60 -0.08 -0.50 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 4 S -0.29 -3.73 21.78 -107.50 -2.34 -6.07 16 5 C -0.07 -0.84 6.69 37.29 0.25 -0.59 16 6 C 0.05 0.75 4.50 -3.93 -0.02 0.73 16 7 N -0.55 -7.97 4.50 -227.03 -1.02 -9.00 16 8 C 0.05 0.87 4.73 -3.83 -0.02 0.86 16 9 C -0.14 -2.89 4.35 -26.73 -0.12 -3.00 16 10 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 11 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.09 1.19 1.35 -67.81 -0.09 1.09 16 20 H 0.06 0.88 7.24 -51.93 -0.38 0.51 16 21 C -0.15 -1.96 7.74 37.16 0.29 -1.67 16 22 H 0.08 0.67 6.28 -51.93 -0.33 0.34 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 27 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 28 H 0.05 0.79 7.02 -51.93 -0.36 0.43 16 29 H 0.08 1.29 5.98 -51.93 -0.31 0.98 16 30 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 31 H 0.05 0.98 6.64 -51.93 -0.34 0.63 16 32 H 0.05 0.99 6.34 -51.93 -0.33 0.66 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 38 H 0.07 1.08 5.67 -51.93 -0.29 0.79 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -29.55 299.43 -9.55 -39.10 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.41 Total: -2.00 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 0.00 Total: -17.13 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.29 Total: -35.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.34 Total: -6.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.55 -9.55 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118419851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.371 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds