Wall clock time and date at job start Mon Mar 30 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.79750 * 2 1 4 4 S 1.81904 * 109.63038 * 120.49241 * 2 1 3 5 5 C 1.81900 * 101.91404 * 171.00685 * 4 2 1 6 6 C 1.53243 * 108.50706 * 308.69078 * 5 4 2 7 7 N 1.46472 * 109.85643 * 62.00605 * 6 5 4 8 8 C 1.46902 * 110.99706 * 162.23642 * 7 6 5 9 9 C 1.53001 * 109.47206 * 293.94740 * 8 7 6 10 10 C 1.52990 * 109.47368 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99946 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99948 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00102 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00028 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47003 * 59.99894 * 15 13 11 17 17 H 1.48495 * 109.47010 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46671 * 300.00148 * 15 13 11 19 19 C 1.46472 * 112.55683 * 287.33929 * 7 6 5 20 20 H 1.09004 * 109.40253 * 192.69855 * 19 7 6 21 21 C 1.53002 * 109.40944 * 312.54004 * 19 7 6 22 22 H 1.09002 * 109.46501 * 299.51334 * 1 2 3 23 23 H 1.09001 * 109.46534 * 59.50564 * 1 2 3 24 24 H 1.08996 * 109.47276 * 179.50968 * 1 2 3 25 25 H 1.08999 * 109.62678 * 68.40366 * 5 4 2 26 26 H 1.09004 * 109.62859 * 188.98429 * 5 4 2 27 27 H 1.08997 * 109.40735 * 182.12243 * 6 5 4 28 28 H 1.09000 * 109.41034 * 301.88660 * 6 5 4 29 29 H 1.08996 * 109.47826 * 53.95488 * 8 7 6 30 30 H 1.09005 * 109.46640 * 173.95197 * 8 7 6 31 31 H 1.08996 * 109.47338 * 300.01046 * 9 8 7 32 32 H 1.08998 * 109.46677 * 60.00034 * 9 8 7 33 33 H 1.09008 * 109.47132 * 300.00426 * 10 9 8 34 34 H 1.08998 * 109.47472 * 60.00181 * 10 9 8 35 35 H 0.97004 * 120.00238 * 180.02562 * 14 13 11 36 36 H 1.08992 * 109.46881 * 67.04668 * 21 19 7 37 37 H 1.08995 * 109.47203 * 187.04674 * 21 19 7 38 38 H 1.09000 * 109.46776 * 307.04820 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8992 1.0255 0.0000 4 16 2.1411 -0.8694 1.4764 5 6 3.9230 -0.9889 1.1311 6 6 4.1084 -1.5853 -0.2683 7 7 3.5090 -0.7003 -1.2697 8 6 4.0184 -1.0047 -2.6136 9 6 5.5104 -0.6724 -2.6808 10 6 6.0408 -0.9888 -4.0805 11 6 7.5105 -0.6621 -4.1464 12 1 8.0157 -0.2686 -3.2768 13 6 8.2103 -0.8666 -5.3167 14 7 7.5954 -1.3472 -6.3752 15 14 10.0323 -0.4623 -5.3982 16 1 10.7652 -1.2758 -4.3951 17 1 10.5473 -0.7705 -6.7565 18 1 10.2326 0.9801 -5.1077 19 6 2.0448 -0.7326 -1.2437 20 1 1.6559 -0.2443 -2.1372 21 6 1.5688 -2.1864 -1.2109 22 1 -0.3632 0.5063 0.8944 23 1 -0.3632 0.5215 -0.8856 24 1 -0.3633 -1.0276 -0.0088 25 1 4.3706 0.0043 1.1682 26 1 4.3967 -1.6350 1.8703 27 1 5.1725 -1.6987 -0.4757 28 1 3.6260 -2.5618 -0.3127 29 1 3.8720 -2.0636 -2.8265 30 1 3.4798 -0.4082 -3.3500 31 1 5.6568 0.3864 -2.4678 32 1 6.0489 -1.2689 -1.9443 33 1 5.8944 -2.0478 -4.2938 34 1 5.5023 -0.3921 -4.8166 35 1 8.0878 -1.4914 -7.1984 36 1 1.8531 -2.6404 -0.2617 37 1 0.4845 -2.2161 -1.3176 38 1 2.0299 -2.7381 -2.0301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118419858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:00:55 Heat of formation + Delta-G solvation = -13.179759 kcal Electronic energy + Delta-G solvation = -15998.022560 eV Core-core repulsion = 13579.952515 eV Total energy + Delta-G solvation = -2418.070045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.06911 -34.73825 -33.37648 -31.79113 -30.27981 -28.58667 -26.15863 -24.94011 -23.22818 -21.86415 -20.02934 -19.57419 -16.81664 -16.25016 -15.69138 -15.08003 -14.85637 -14.55280 -14.40607 -14.36141 -13.41938 -12.84751 -12.57436 -12.42667 -12.26330 -12.04342 -11.85629 -11.77779 -11.42618 -11.21864 -10.89729 -10.85565 -10.78066 -10.54878 -10.45996 -9.77295 -9.50160 -9.34353 -9.07998 -8.34703 -8.17022 -7.59075 -6.00114 -4.02390 1.76006 2.51278 3.33305 3.37585 3.40172 3.89194 4.46336 4.61016 4.85302 5.00570 5.02783 5.18924 5.23239 5.32719 5.35691 5.38465 5.49674 5.62332 5.70246 5.75760 5.81283 5.89813 5.93734 5.94803 6.05483 6.25160 6.31787 6.66903 6.71618 7.08876 7.30208 7.32083 7.66988 7.81560 7.99816 8.42993 9.04486 9.61687 11.11276 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.046094 B = 0.004535 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.310125 B = 6172.492625 C = 6498.076487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.037 4.037 3 H 0.094 0.906 4 S -0.281 6.281 5 C -0.070 4.070 6 C 0.044 3.956 7 N -0.546 5.546 8 C 0.061 3.939 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.083 3.917 20 H 0.089 0.911 21 C -0.192 4.192 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.261 0.739 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.031 0.309 12.859 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 H 0.112 0.888 4 S -0.055 6.055 5 C -0.219 4.219 6 C -0.086 4.086 7 N -0.270 5.270 8 C -0.065 4.065 9 C -0.143 4.143 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.027 4.027 20 H 0.107 0.893 21 C -0.251 4.251 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.422 0.364 13.702 19.184 hybrid contribution 1.499 -0.146 -1.375 2.039 sum -11.923 0.217 12.327 17.151 Atomic orbital electron populations 1.21663 0.92076 1.03040 1.02502 1.23269 0.98496 1.01406 0.93444 0.88767 1.86682 1.09200 1.78009 1.31565 1.23502 0.93308 1.05271 0.99810 1.22314 1.01607 0.94615 0.90016 1.61436 1.05013 1.53897 1.06646 1.22261 0.98205 0.98770 0.87285 1.21687 0.91242 1.00761 1.00607 1.19062 0.95607 0.96715 0.90137 1.21201 0.94595 1.42809 0.97176 0.92763 1.25019 0.98332 0.95281 0.95790 1.69953 1.36265 1.45321 1.02057 0.86662 0.85437 0.78900 0.77033 1.20266 1.21293 1.20219 1.21790 0.88281 0.95420 0.97226 0.89277 1.22607 1.01633 0.97481 1.03353 0.91840 0.91118 0.91473 0.89125 0.87882 0.88769 0.92969 0.95008 0.91148 0.92623 0.93426 0.96834 0.96625 0.92970 0.90295 0.92098 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.94 37.16 0.33 -0.88 16 2 C -0.04 -0.42 3.09 -26.60 -0.08 -0.50 16 3 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 4 S -0.28 -3.41 20.14 -107.50 -2.16 -5.58 16 5 C -0.07 -0.84 6.69 37.28 0.25 -0.59 16 6 C 0.04 0.59 5.04 -3.93 -0.02 0.57 16 7 N -0.55 -7.93 4.33 -227.03 -0.98 -8.92 16 8 C 0.06 1.04 4.67 -3.82 -0.02 1.02 16 9 C -0.11 -2.14 5.12 -26.74 -0.14 -2.28 16 10 C 0.02 0.57 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.08 1.03 2.36 -67.82 -0.16 0.87 16 20 H 0.09 1.09 7.73 -51.93 -0.40 0.69 16 21 C -0.19 -2.24 7.54 37.16 0.28 -1.96 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.61 6.59 -51.93 -0.34 0.26 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.36 5.89 -51.93 -0.31 1.05 16 28 H 0.05 0.70 5.73 -51.93 -0.30 0.40 16 29 H 0.03 0.55 7.25 -51.93 -0.38 0.17 16 30 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.95 6.26 -51.93 -0.33 0.63 16 33 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.08 0.96 5.13 -51.93 -0.27 0.69 16 37 H 0.06 0.62 6.82 -51.93 -0.35 0.26 16 38 H 0.06 0.72 7.06 -51.93 -0.37 0.35 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -29.46 299.03 -9.39 -38.86 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.36 Total: -2.46 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -0.10 Total: -16.83 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.25 Total: -35.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.16 Total: -5.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.46 -9.39 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118419858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.679 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds