Wall clock time and date at job start Mon Mar 30 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47332 * 2 1 4 4 H 1.08996 * 110.87557 * 57.38946 * 3 2 1 5 5 C 1.55138 * 110.98736 * 293.54371 * 3 2 1 6 6 C 1.54316 * 103.01971 * 206.21487 * 5 3 2 7 7 N 1.47442 * 107.23202 * 22.28700 * 6 5 3 8 8 C 1.46906 * 111.00227 * 123.25597 * 7 6 5 9 9 C 1.53004 * 109.46819 * 69.87156 * 8 7 6 10 10 C 1.53001 * 109.46910 * 179.97438 * 9 8 7 11 11 S 1.80995 * 109.47186 * 180.02562 * 10 9 8 12 12 C 1.76199 * 99.99933 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00353 * 0.02562 * 12 11 10 14 14 C 1.38801 * 119.99705 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00132 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99774 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 179.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00133 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00126 * 16 14 12 20 20 C 1.47843 * 108.56547 * 0.98890 * 7 6 5 21 21 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47247 * 300.00760 * 1 2 3 23 23 H 1.08999 * 109.46758 * 60.00046 * 1 2 3 24 24 H 1.08996 * 109.47482 * 239.99739 * 2 1 3 25 25 H 1.08999 * 109.47493 * 119.99835 * 2 1 3 26 26 H 1.09002 * 110.70485 * 87.83669 * 5 3 2 27 27 H 1.09005 * 110.85907 * 324.67183 * 5 3 2 28 28 H 1.08992 * 109.89065 * 262.88011 * 6 5 3 29 29 H 1.09001 * 109.89280 * 141.69085 * 6 5 3 30 30 H 1.08994 * 109.46660 * 309.87646 * 8 7 6 31 31 H 1.08998 * 109.47231 * 189.87512 * 8 7 6 32 32 H 1.09001 * 109.46462 * 60.00693 * 9 8 7 33 33 H 1.08996 * 109.47005 * 300.00257 * 9 8 7 34 34 H 1.08995 * 109.46972 * 60.00160 * 10 9 8 35 35 H 1.08998 * 109.47245 * 300.00421 * 10 9 8 36 36 H 0.97001 * 120.00200 * 359.97438 * 15 14 12 37 37 H 1.09001 * 110.37584 * 94.73853 * 20 7 6 38 38 H 1.09009 * 110.37170 * 217.07431 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6521 1.9917 0.8579 5 6 1.6798 2.1593 -1.3279 6 6 2.7749 3.2399 -1.4479 7 7 3.9181 2.7960 -0.6293 8 6 5.1429 2.7138 -1.4363 9 6 5.5997 4.1240 -1.8151 10 6 6.8757 4.0384 -2.6549 11 16 7.4166 5.7067 -3.1025 12 6 8.8592 5.3201 -4.0373 13 1 9.1524 4.2901 -4.1769 14 6 9.6183 6.3394 -4.5953 15 7 9.2608 7.5948 -4.4257 16 14 11.1481 5.9297 -5.5859 17 1 11.7754 7.1856 -6.0702 18 1 10.7738 5.0839 -6.7477 19 1 12.1111 5.1938 -4.7278 20 6 3.5882 1.4846 -0.0319 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.6925 2.6167 -1.2634 27 1 1.7280 1.4667 -2.1683 28 1 2.3987 4.1921 -1.0740 29 1 3.0819 3.3429 -2.4887 30 1 4.9435 2.1409 -2.3419 31 1 5.9256 2.2209 -0.8595 32 1 5.7991 4.6968 -0.9094 33 1 4.8170 4.6168 -2.3918 34 1 6.6768 3.4654 -3.5605 35 1 7.6582 3.5457 -2.0778 36 1 8.4666 7.8076 -3.9110 37 1 3.9772 0.6766 -0.6515 38 1 3.9905 1.4161 0.9789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125389397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:10 Heat of formation + Delta-G solvation = -53.081231 kcal Electronic energy + Delta-G solvation = -15144.705403 eV Core-core repulsion = 12724.905100 eV Total energy + Delta-G solvation = -2419.800303 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30587 -36.37981 -34.78992 -33.92888 -30.86979 -29.54150 -27.39455 -26.22076 -23.90814 -23.00031 -21.60732 -20.73516 -20.23741 -17.36928 -17.14099 -16.29010 -16.07991 -15.74237 -15.37944 -15.12703 -14.70345 -14.41530 -14.26510 -14.06731 -13.96134 -13.18797 -12.94296 -12.83780 -12.74564 -12.58659 -12.29611 -11.98440 -11.96668 -11.80444 -11.62930 -11.49771 -11.35937 -11.18675 -11.11277 -10.43067 -9.31796 -8.95598 -8.89013 -6.30016 1.39930 1.56684 1.57245 1.78867 2.31950 2.93211 2.98837 3.13074 3.57273 3.71213 3.86929 3.91564 4.13944 4.21573 4.29175 4.35611 4.37780 4.45477 4.54847 4.60224 4.65430 4.69984 4.73285 4.92387 4.95117 4.98709 5.04733 5.10303 5.18215 5.19773 5.25264 5.38615 5.50008 5.60832 6.01014 6.06723 6.14385 7.03187 8.49004 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.069580 B = 0.003426 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.318105 B = 8171.357551 C = 8320.784964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.090 4.090 4 H 0.083 0.917 5 C -0.130 4.130 6 C 0.034 3.966 7 N -0.543 5.543 8 C 0.068 3.932 9 C -0.081 4.081 10 C -0.067 4.067 11 S -0.245 6.245 12 C -0.606 4.606 13 H 0.065 0.935 14 C -0.019 4.019 15 N -0.912 5.912 16 Si 1.134 2.866 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.265 1.265 20 C 0.043 3.957 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.263 0.737 37 H 0.048 0.952 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.771 -16.108 8.073 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.109 4.109 4 H 0.102 0.898 5 C -0.168 4.168 6 C -0.093 4.093 7 N -0.268 5.268 8 C -0.062 4.062 9 C -0.120 4.120 10 C -0.216 4.216 11 S -0.017 6.017 12 C -0.754 4.754 13 H 0.084 0.916 14 C -0.222 4.222 15 N -0.547 5.547 16 Si 0.952 3.048 17 H -0.201 1.201 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.084 4.084 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.907 -14.042 7.869 21.939 hybrid contribution -0.665 -2.012 -0.153 2.125 sum -15.572 -16.054 7.716 23.659 Atomic orbital electron populations 1.21757 0.94992 1.02010 1.02031 1.21445 0.96576 0.94519 1.02280 1.22319 0.93694 0.96977 0.97958 0.89839 1.22820 0.98998 0.97272 0.97731 1.22906 0.90973 0.99380 0.96077 1.63503 1.03006 1.27680 1.32571 1.22128 0.92845 0.95345 0.95905 1.21157 0.94269 0.97769 0.98756 1.23029 1.00320 0.96698 1.01589 1.84238 1.34853 1.13125 1.69447 1.23904 1.12775 0.97803 1.40883 0.91643 1.27822 1.05278 0.91753 0.97351 1.70912 1.26031 1.19432 1.38294 0.82739 0.70698 0.76228 0.75123 1.20067 1.19015 1.19002 1.23164 0.96159 0.89126 0.99964 0.92154 0.92477 0.92715 0.92179 0.91184 0.89684 0.91329 0.90920 0.93373 0.94398 0.90371 0.91713 0.92130 0.91838 0.91599 0.92631 0.93319 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.76 71.98 0.70 -0.94 16 2 C -0.11 -1.38 5.45 30.60 0.17 -1.21 16 3 C -0.09 -1.42 3.06 -9.41 -0.03 -1.45 16 4 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.13 -2.19 5.58 31.77 0.18 -2.01 16 6 C 0.03 0.77 6.21 86.65 0.54 1.31 16 7 N -0.54 -13.34 5.16 -885.55 -4.57 -17.91 16 8 C 0.07 1.83 4.54 86.30 0.39 2.23 16 9 C -0.08 -2.73 5.25 30.60 0.16 -2.57 16 10 C -0.07 -2.77 5.67 71.98 0.41 -2.37 16 11 S -0.24 -13.31 20.46 -56.49 -1.16 -14.46 16 12 C -0.61 -36.07 9.50 67.95 0.65 -35.43 16 13 H 0.07 3.77 7.80 -2.91 -0.02 3.75 16 14 C -0.02 -1.10 5.49 84.86 0.47 -0.64 16 15 N -0.91 -57.92 13.67 21.65 0.30 -57.63 16 16 Si 1.13 50.27 29.92 68.60 2.05 52.33 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 C 0.04 0.83 6.15 86.77 0.53 1.37 16 21 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.05 0.61 7.50 -2.39 -0.02 0.59 16 24 H 0.06 0.78 8.11 -2.39 -0.02 0.76 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 27 H 0.07 1.13 8.02 -2.38 -0.02 1.11 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.17 6.91 -2.39 -0.02 1.15 16 30 H 0.04 1.00 7.96 -2.39 -0.02 0.98 16 31 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.10 7.14 -2.39 -0.02 2.08 16 34 H 0.06 2.59 8.14 -2.40 -0.02 2.57 16 35 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 36 H 0.26 17.14 7.12 -92.71 -0.66 16.48 16 37 H 0.05 0.91 7.71 -2.39 -0.02 0.90 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -67.89 314.95 1.88 -66.01 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.10 Total: 13.36 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 4.16 Total: -41.70 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -4.27 Total: -75.53 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.33 kcal Atomic # 16 Polarization: -13.31 SS G_CDS: -1.16 Total: -14.46 kcal Total: -67.89 1.88 -66.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125389397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.927 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds