Wall clock time and date at job start Mon Mar 30 2020 18:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00013 * 2 1 4 4 O 1.20825 * 119.99605 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00184 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.46199 * 57.58715 * 5 3 2 7 7 C 1.54379 * 110.41380 * 295.17371 * 5 3 2 8 8 C 1.54256 * 105.06025 * 217.36823 * 7 5 3 9 9 H 1.09006 * 110.32543 * 118.89463 * 8 7 5 10 10 O 1.42902 * 110.32592 * 241.10349 * 8 7 5 11 11 C 1.54378 * 105.06380 * 0.02562 * 8 7 5 12 12 N 1.48556 * 104.59344 * 23.84758 * 11 8 7 13 13 C 1.46898 * 111.00242 * 200.96111 * 12 11 8 14 14 C 1.53003 * 109.47063 * 285.42165 * 13 12 11 15 15 C 1.50703 * 109.47038 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 H 1.09006 * 109.46597 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47618 * 299.99637 * 1 2 3 25 25 H 1.09001 * 109.46856 * 60.00421 * 1 2 3 26 26 H 1.09005 * 110.32179 * 336.26209 * 7 5 3 27 27 H 1.08997 * 110.32596 * 98.36929 * 7 5 3 28 28 H 0.96699 * 113.99840 * 180.02562 * 10 8 7 29 29 H 1.08999 * 110.40679 * 265.07464 * 11 8 7 30 30 H 1.08996 * 110.41685 * 142.63396 * 11 8 7 31 31 H 1.08996 * 109.47442 * 165.42286 * 13 12 11 32 32 H 1.08996 * 109.46826 * 45.42284 * 13 12 11 33 33 H 1.09003 * 109.46825 * 60.00196 * 14 13 12 34 34 H 1.08996 * 109.47396 * 299.99770 * 14 13 12 35 35 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9758 0.7481 -0.8613 7 6 4.1357 0.6888 1.3104 8 6 5.3394 1.5872 1.6615 9 1 5.1818 2.0719 2.6250 10 8 6.5435 0.8179 1.6828 11 6 5.3957 2.6410 0.5347 12 7 4.0103 2.6929 0.0011 13 6 3.9899 3.2512 -1.3574 14 6 4.2087 4.7640 -1.2904 15 6 4.1883 5.3368 -2.6842 16 1 4.0351 4.6867 -3.5330 17 6 4.3664 6.6905 -2.8760 18 7 4.5534 7.4820 -1.8425 19 14 4.3404 7.4004 -4.6036 20 1 5.7162 7.3925 -5.1628 21 1 3.8327 8.7952 -4.5581 22 1 3.4519 6.5781 -5.4635 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.3871 0.7325 2.1015 27 1 4.4615 -0.3396 1.1547 28 1 7.3343 1.3309 1.8986 29 1 6.0915 2.3282 -0.2439 30 1 5.6851 3.6121 0.9364 31 1 3.0255 3.0438 -1.8211 32 1 4.7832 2.7952 -1.9496 33 1 5.1731 4.9714 -0.8268 34 1 3.4153 5.2201 -0.6983 35 1 4.5665 7.1133 -0.9455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163817205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:45 Heat of formation + Delta-G solvation = -160.997372 kcal Electronic energy + Delta-G solvation = -18065.472328 eV Core-core repulsion = 15062.406465 eV Total energy + Delta-G solvation = -3003.065863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.84671 -40.09674 -37.64177 -37.08261 -35.73713 -33.29629 -30.67323 -29.83112 -28.34761 -26.13281 -24.41759 -23.05739 -21.81958 -21.44050 -19.12796 -18.89398 -18.30515 -17.87053 -17.47310 -16.51464 -15.99023 -15.70662 -15.43067 -14.99730 -14.83440 -14.73219 -14.21696 -13.95421 -13.78912 -13.62345 -13.25813 -12.83513 -12.81561 -12.64265 -12.06620 -11.97669 -11.88497 -11.85952 -11.75385 -11.47548 -11.02264 -10.76612 -10.57023 -9.68575 -8.73707 -6.43766 1.07776 1.49353 1.51418 1.60081 1.77867 2.52579 2.76197 3.12761 3.25564 3.41539 3.49961 3.80614 3.93015 4.10246 4.16837 4.28905 4.29175 4.30034 4.36256 4.60129 4.66535 4.73608 4.79879 4.86061 4.92224 5.14046 5.24655 5.30349 5.65570 5.71511 6.00500 6.13513 6.52206 6.70818 6.80896 7.38837 8.67586 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.006400 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.886270 B = 4374.143108 C = 5382.969403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.521 6.521 5 C 0.065 3.935 6 H 0.101 0.899 7 C -0.094 4.094 8 C 0.113 3.887 9 H 0.087 0.913 10 O -0.569 6.569 11 C 0.004 3.996 12 N -0.509 5.509 13 C 0.081 3.919 14 C 0.028 3.972 15 C -0.623 4.623 16 H 0.049 0.951 17 C -0.037 4.037 18 N -0.934 5.934 19 Si 1.122 2.878 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.271 1.271 23 H 0.141 0.859 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.399 0.601 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.036 0.964 33 H -0.004 1.004 34 H -0.017 1.017 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 -17.916 6.462 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.408 6.408 5 C -0.045 4.045 6 H 0.119 0.881 7 C -0.131 4.131 8 C 0.054 3.946 9 H 0.105 0.895 10 O -0.377 6.377 11 C -0.124 4.124 12 N -0.235 5.235 13 C -0.047 4.047 14 C -0.009 4.009 15 C -0.661 4.661 16 H 0.068 0.932 17 C -0.235 4.235 18 N -0.571 5.571 19 Si 0.943 3.057 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.196 1.196 23 H 0.158 0.842 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.250 0.750 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.001 0.999 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.648 -16.382 5.789 17.453 hybrid contribution 0.302 -0.850 0.501 1.032 sum -1.345 -17.231 6.291 18.393 Atomic orbital electron populations 1.23569 0.74714 1.05918 1.02289 1.86476 1.24973 1.31959 1.83951 1.23659 0.91849 0.81439 0.71942 1.90712 1.67356 1.37711 1.45045 1.22332 0.87721 0.91795 1.02602 0.88144 1.22208 0.96123 1.00884 0.93907 1.22363 0.85371 0.89817 0.97079 0.89476 1.86464 1.17826 1.39593 1.93798 1.23932 0.88890 1.01086 0.98454 1.65034 1.20985 1.14497 1.22988 1.21987 0.99126 0.96219 0.87385 1.18957 0.94196 0.91881 0.95876 1.22443 1.54173 0.96055 0.93443 0.93249 1.27506 0.92479 0.94658 1.08810 1.70876 1.47935 1.38586 0.99736 0.82883 0.78018 0.75397 0.69419 1.19196 1.20665 1.19636 0.84150 0.92001 0.92750 0.88922 0.86794 0.75044 0.92462 0.90188 0.93332 0.94597 0.98566 0.99899 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -9.19 10.57 -51.44 -0.54 -9.73 16 3 C 0.47 15.32 6.89 71.23 0.49 15.81 16 4 O -0.52 -21.70 15.65 21.97 0.34 -21.36 16 5 C 0.07 1.96 2.78 44.31 0.12 2.08 16 6 H 0.10 2.77 8.00 -2.39 -0.02 2.76 16 7 C -0.09 -2.13 6.35 31.49 0.20 -1.93 16 8 C 0.11 2.59 4.42 31.49 0.14 2.73 16 9 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 10 O -0.57 -11.26 13.27 -148.98 -1.98 -13.24 16 11 C 0.00 0.13 5.66 86.45 0.49 0.62 16 12 N -0.51 -19.22 4.60 -861.00 -3.96 -23.18 16 13 C 0.08 3.67 4.58 86.30 0.40 4.06 16 14 C 0.03 1.58 4.40 29.85 0.13 1.71 16 15 C -0.62 -37.42 9.11 25.60 0.23 -37.19 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 18 N -0.93 -59.99 13.65 21.45 0.29 -59.70 16 19 Si 1.12 51.78 29.90 68.60 2.05 53.84 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H 0.14 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 25 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 26 H 0.09 1.96 7.85 -2.38 -0.02 1.94 16 27 H 0.11 2.18 7.99 -2.39 -0.02 2.16 16 28 H 0.40 4.78 9.12 -74.06 -0.68 4.10 16 29 H 0.06 1.76 7.69 -2.39 -0.02 1.74 16 30 H 0.08 2.63 7.85 -2.39 -0.02 2.61 16 31 H 0.05 2.34 7.40 -2.39 -0.02 2.32 16 32 H 0.04 1.55 7.77 -2.39 -0.02 1.53 16 33 H 0.00 -0.22 7.33 -2.39 -0.02 -0.24 16 34 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 35 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 Total: -1.00 -77.40 295.68 0.58 -76.83 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.51 Total: 8.67 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 3.86 Total: -12.12 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.67 Total: -82.87 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.18 Total: -44.33 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.05 Total: 53.84 kcal Total: -77.40 0.58 -76.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163817205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.172 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds