Wall clock time and date at job start Mon Mar 30 2020 18:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39540 * 120.14247 * 172.78040 * 3 2 1 5 5 C 1.37971 * 119.85697 * 180.02562 * 4 3 2 6 6 C 1.38347 * 120.14204 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.85631 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47089 * 90.00015 * 7 6 5 9 9 C 1.46904 * 110.99841 * 66.04861 * 8 7 6 10 10 C 1.46899 * 111.00230 * 190.00004 * 8 7 6 11 11 H 1.09002 * 109.47043 * 55.00375 * 10 8 7 12 12 C 1.52997 * 109.47254 * 295.00304 * 10 8 7 13 13 C 1.50699 * 109.47244 * 175.00202 * 10 8 7 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48491 * 109.47045 * 120.00577 * 17 15 13 20 20 H 1.48501 * 109.46950 * 240.00369 * 17 15 13 21 21 C 1.38348 * 120.28863 * 0.26166 * 6 5 4 22 22 C 1.37973 * 120.13732 * 359.47989 * 21 6 5 23 23 H 4.52072 * 14.01849 * 0.02562 * 4 2 1 24 24 H 1.07994 * 120.07020 * 359.97438 * 4 3 2 25 25 H 1.07996 * 119.92812 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47076 * 330.00156 * 7 6 5 27 27 H 1.09000 * 109.47366 * 210.00784 * 7 6 5 28 28 H 1.08992 * 109.47139 * 183.95276 * 9 8 7 29 29 H 1.08998 * 109.46871 * 303.95426 * 9 8 7 30 30 H 1.09004 * 109.46908 * 63.95125 * 9 8 7 31 31 H 1.08998 * 109.47533 * 59.99633 * 12 10 8 32 32 H 1.08996 * 109.47853 * 179.97438 * 12 10 8 33 33 H 1.09002 * 109.47153 * 300.00004 * 12 10 8 34 34 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 35 35 H 1.07991 * 119.93003 * 179.72353 * 21 6 5 36 36 H 1.08002 * 120.07043 * 180.23964 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3061 1.1981 -0.1517 5 6 4.6858 1.1918 -0.1513 6 6 5.3751 0.0018 -0.0005 7 6 6.8821 0.0023 -0.0017 8 7 7.3727 0.1772 1.3718 9 6 7.0243 -0.9803 2.2066 10 6 8.8215 0.4197 1.3865 11 1 9.0539 1.2705 0.7460 12 6 9.5517 -0.8217 0.8704 13 6 9.2671 0.7152 2.7954 14 1 8.5462 0.7217 3.5996 15 6 10.5952 0.9762 3.0580 16 7 11.4731 0.9678 2.0788 17 14 11.1477 1.3418 4.8046 18 1 9.9760 1.2902 5.7155 19 1 12.1489 0.3306 5.2289 20 1 11.7575 2.6948 4.8579 21 6 4.6869 -1.1895 0.1454 22 6 3.3072 -1.1962 0.1521 23 1 -1.0500 -0.0011 0.0006 24 1 2.7692 2.1276 -0.2699 25 1 5.2289 2.1179 -0.2690 26 1 7.2446 0.8206 -0.6239 27 1 7.2455 -0.9451 -0.3996 28 1 7.3372 -0.7947 3.2340 29 1 5.9461 -1.1376 2.1779 30 1 7.5311 -1.8677 1.8271 31 1 9.2294 -1.0355 -0.1486 32 1 10.6267 -0.6417 0.8809 33 1 9.3193 -1.6725 1.5110 34 1 12.4074 1.1518 2.2634 35 1 5.2308 -2.1156 0.2582 36 1 2.7711 -2.1263 0.2699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289459866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:04 Heat of formation + Delta-G solvation = 82.954166 kcal Electronic energy + Delta-G solvation = -16653.412961 eV Core-core repulsion = 14104.067644 eV Total energy + Delta-G solvation = -2549.345316 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.39674 -37.05335 -34.02649 -32.65732 -30.89004 -30.70128 -28.38713 -26.73719 -25.18019 -23.95896 -22.44857 -21.47653 -19.19465 -18.90223 -16.30463 -15.90447 -15.31020 -15.27751 -14.94090 -14.29410 -13.62458 -13.48910 -13.23053 -13.00601 -12.80549 -12.51740 -11.67181 -11.42651 -11.21341 -11.16284 -11.00798 -10.83699 -10.71157 -10.59951 -10.45897 -10.38872 -10.02667 -9.81886 -8.89396 -8.80170 -8.39816 -8.26279 -7.15204 -6.01676 -4.05236 1.03790 1.54287 2.68250 3.03763 3.29966 3.37993 3.42833 4.07181 4.23115 4.42442 4.99575 5.06689 5.09434 5.28508 5.32941 5.52540 5.63099 5.65300 5.89826 6.06060 6.19975 6.21023 6.28799 6.40255 6.50327 6.55869 6.66756 6.80198 6.88000 6.90411 7.07799 7.10923 7.46357 7.47001 7.71039 7.82940 8.10179 8.36912 8.58136 9.01100 9.59946 11.05490 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042417 B = 0.004607 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.954542 B = 6076.828060 C = 6268.008428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.013 4.013 4 C -0.095 4.095 5 C -0.101 4.101 6 C -0.045 4.045 7 C 0.084 3.916 8 N -0.528 5.528 9 C 0.030 3.970 10 C 0.210 3.790 11 H 0.040 0.960 12 C -0.173 4.173 13 C -0.498 4.498 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.284 1.284 21 C -0.116 4.116 22 C -0.096 4.096 23 H 0.222 0.778 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.018 0.982 31 H 0.007 0.993 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.259 0.741 35 H 0.124 0.876 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -3.043 -5.142 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 C -0.013 4.013 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.046 4.046 7 C -0.044 4.044 8 N -0.251 5.251 9 C -0.118 4.118 10 C 0.104 3.896 11 H 0.058 0.942 12 C -0.232 4.232 13 C -0.537 4.537 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.134 4.134 22 C -0.114 4.114 23 H 0.238 0.762 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.026 0.974 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.816 -2.589 -4.963 15.839 hybrid contribution 0.632 -0.565 0.604 1.041 sum -14.184 -3.154 -4.359 15.171 Atomic orbital electron populations 1.24790 0.95706 1.00150 1.01006 1.20196 0.92133 1.00588 1.00408 1.15912 0.86252 0.94253 1.04914 1.21147 0.94176 0.96657 0.99284 1.21004 0.93227 0.98252 0.99426 1.20185 0.96476 0.92746 0.95163 1.21094 0.89198 1.00699 0.93386 1.62407 1.18137 1.38045 1.06536 1.22312 0.98343 0.91765 0.99387 1.19347 0.79545 0.93349 0.97364 0.94224 1.22411 1.05633 0.99558 0.95635 1.21159 0.92852 1.46658 0.93029 0.91857 1.24927 0.96675 0.95539 0.97176 1.69894 1.02484 1.50015 1.31046 0.86469 0.78577 0.77814 0.84728 1.19737 1.21205 1.21051 1.21013 0.93509 0.98208 1.00673 1.21083 0.94020 0.96716 0.99560 0.76163 0.85965 0.85245 0.90487 0.94474 0.90906 0.93578 0.96387 0.97364 0.89307 0.95046 0.93070 0.85819 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.13 -1.71 13.24 -38.84 -0.51 -2.23 16 3 C -0.01 -0.18 5.72 -107.00 -0.61 -0.79 16 4 C -0.09 -1.28 9.75 -39.19 -0.38 -1.66 16 5 C -0.10 -1.47 9.68 -39.64 -0.38 -1.85 16 6 C -0.05 -0.70 4.89 -104.54 -0.51 -1.21 16 7 C 0.08 1.49 4.55 -4.98 -0.02 1.47 16 8 N -0.53 -11.15 4.73 -237.73 -1.13 -12.28 16 9 C 0.03 0.60 8.55 60.07 0.51 1.11 16 10 C 0.21 5.18 2.34 -68.87 -0.16 5.02 16 11 H 0.04 1.07 8.03 -51.93 -0.42 0.66 16 12 C -0.17 -4.11 8.28 37.16 0.31 -3.80 16 13 C -0.50 -13.50 7.94 -34.44 -0.27 -13.77 16 14 H 0.06 1.73 6.75 -52.49 -0.35 1.38 16 15 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 16 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.12 -1.63 7.89 -39.64 -0.31 -1.95 16 22 C -0.10 -1.27 9.75 -39.19 -0.38 -1.66 16 23 H 0.22 1.34 7.80 -54.09 -0.42 0.91 16 24 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 25 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.08 1.35 7.94 -51.93 -0.41 0.94 16 27 H 0.04 0.65 6.88 -51.93 -0.36 0.29 16 28 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 29 H 0.05 0.80 5.90 -51.93 -0.31 0.50 16 30 H 0.02 0.34 6.28 -51.93 -0.33 0.02 16 31 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 32 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 33 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.12 1.62 7.99 -52.49 -0.42 1.20 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -28.87 299.85 -8.02 -36.89 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.75 Total: 0.59 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.26 Total: -21.33 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.50 Total: -36.90 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.87 -8.02 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289459866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.844 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds