Wall clock time and date at job start Mon Mar 30 2020 18:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39540 * 120.14247 * 172.78040 * 3 2 1 5 5 C 1.37971 * 119.85697 * 180.02562 * 4 3 2 6 6 C 1.38347 * 120.14204 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.85631 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47089 * 90.00015 * 7 6 5 9 9 C 1.46904 * 110.99841 * 66.04861 * 8 7 6 10 10 C 1.46899 * 111.00230 * 190.00004 * 8 7 6 11 11 H 1.09002 * 109.47043 * 55.00375 * 10 8 7 12 12 C 1.52997 * 109.47254 * 295.00304 * 10 8 7 13 13 C 1.50699 * 109.47244 * 175.00202 * 10 8 7 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48491 * 109.47045 * 120.00577 * 17 15 13 20 20 H 1.48501 * 109.46950 * 240.00369 * 17 15 13 21 21 C 1.38348 * 120.28863 * 0.26166 * 6 5 4 22 22 C 1.37973 * 120.13732 * 359.47989 * 21 6 5 23 23 H 4.52072 * 14.01849 * 0.02562 * 4 2 1 24 24 H 1.07994 * 120.07020 * 359.97438 * 4 3 2 25 25 H 1.07996 * 119.92812 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47076 * 330.00156 * 7 6 5 27 27 H 1.09000 * 109.47366 * 210.00784 * 7 6 5 28 28 H 1.08992 * 109.47139 * 183.95276 * 9 8 7 29 29 H 1.08998 * 109.46871 * 303.95426 * 9 8 7 30 30 H 1.09004 * 109.46908 * 63.95125 * 9 8 7 31 31 H 1.08998 * 109.47533 * 59.99633 * 12 10 8 32 32 H 1.08996 * 109.47853 * 179.97438 * 12 10 8 33 33 H 1.09002 * 109.47153 * 300.00004 * 12 10 8 34 34 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 35 35 H 1.07991 * 119.93003 * 179.72353 * 21 6 5 36 36 H 1.08002 * 120.07043 * 180.23964 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3061 1.1981 -0.1517 5 6 4.6858 1.1918 -0.1513 6 6 5.3751 0.0018 -0.0005 7 6 6.8821 0.0023 -0.0017 8 7 7.3727 0.1772 1.3718 9 6 7.0243 -0.9803 2.2066 10 6 8.8215 0.4197 1.3865 11 1 9.0539 1.2705 0.7460 12 6 9.5517 -0.8217 0.8704 13 6 9.2671 0.7152 2.7954 14 1 8.5462 0.7217 3.5996 15 6 10.5952 0.9762 3.0580 16 7 11.4731 0.9678 2.0788 17 14 11.1477 1.3418 4.8046 18 1 9.9760 1.2902 5.7155 19 1 12.1489 0.3306 5.2289 20 1 11.7575 2.6948 4.8579 21 6 4.6869 -1.1895 0.1454 22 6 3.3072 -1.1962 0.1521 23 1 -1.0500 -0.0011 0.0006 24 1 2.7692 2.1276 -0.2699 25 1 5.2289 2.1179 -0.2690 26 1 7.2446 0.8206 -0.6239 27 1 7.2455 -0.9451 -0.3996 28 1 7.3372 -0.7947 3.2340 29 1 5.9461 -1.1376 2.1779 30 1 7.5311 -1.8677 1.8271 31 1 9.2294 -1.0355 -0.1486 32 1 10.6267 -0.6417 0.8809 33 1 9.3193 -1.6725 1.5110 34 1 12.4074 1.1518 2.2634 35 1 5.2308 -2.1156 0.2582 36 1 2.7711 -2.1263 0.2699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289459866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:04 Heat of formation + Delta-G solvation = 67.320949 kcal Electronic energy + Delta-G solvation = -16654.090868 eV Core-core repulsion = 14104.067644 eV Total energy + Delta-G solvation = -2550.023224 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55584 -38.65363 -35.31504 -34.32509 -32.01235 -31.94958 -30.11640 -28.18049 -27.18504 -25.47905 -23.51907 -22.82202 -20.95224 -19.82353 -18.24689 -17.19579 -16.77935 -16.47033 -16.20571 -16.06715 -15.10986 -14.98830 -14.41689 -14.30706 -14.19193 -13.97918 -13.46293 -12.98011 -12.89605 -12.64521 -12.60127 -12.39566 -12.28576 -12.09284 -11.93159 -11.90725 -11.59464 -11.34688 -10.88879 -10.49071 -9.87204 -9.35946 -8.81896 -8.10014 -6.20538 -0.00916 0.47933 1.41760 1.44057 1.55569 1.82375 2.06185 2.44223 3.02305 3.19366 3.41124 3.59026 3.91084 3.98888 4.07706 4.40954 4.47916 4.58285 4.67060 4.70248 4.74954 4.82009 4.89929 4.91208 5.12349 5.14188 5.17793 5.20671 5.46908 5.51857 5.55875 5.70339 5.74821 5.80926 6.01222 6.20054 6.48784 6.62126 6.73856 6.93255 7.48732 8.96198 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042417 B = 0.004607 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.954542 B = 6076.828060 C = 6268.008428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.195 4.195 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.108 4.108 6 C -0.065 4.065 7 C 0.090 3.910 8 N -0.539 5.539 9 C 0.038 3.962 10 C 0.214 3.786 11 H 0.009 0.991 12 C -0.159 4.159 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.116 4.116 22 C -0.099 4.099 23 H 0.262 0.738 24 H 0.139 0.861 25 H 0.130 0.870 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.134 0.866 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.143 -3.603 -4.813 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.195 4.195 3 C -0.014 4.014 4 C -0.118 4.118 5 C -0.126 4.126 6 C -0.066 4.066 7 C -0.037 4.037 8 N -0.262 5.262 9 C -0.110 4.110 10 C 0.107 3.893 11 H 0.026 0.974 12 C -0.218 4.218 13 C -0.552 4.552 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.784 3.216 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.134 4.134 22 C -0.117 4.117 23 H 0.278 0.722 24 H 0.156 0.844 25 H 0.148 0.852 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.161 -3.154 -4.640 18.055 hybrid contribution 1.168 -0.385 0.445 1.307 sum -15.994 -3.539 -4.195 16.909 Atomic orbital electron populations 1.25772 0.96451 0.97263 0.97578 1.20413 0.92588 1.03328 1.03171 1.16162 0.87378 0.94305 1.03522 1.21327 0.93724 0.97616 0.99129 1.21083 0.93916 0.98046 0.99598 1.20009 0.94966 0.93897 0.97718 1.21031 0.90926 1.00512 0.91258 1.62264 1.15764 1.39254 1.08914 1.22238 0.99717 0.91128 0.97906 1.19094 0.81988 0.92559 0.95620 0.97357 1.22204 1.03633 0.99171 0.96820 1.21412 0.93022 1.46771 0.93981 0.92633 1.25668 0.96795 0.95420 1.00802 1.70014 1.02697 1.50581 1.32786 0.85505 0.78106 0.77631 0.80371 1.19358 1.20670 1.20736 1.21112 0.94047 0.97960 1.00286 1.21314 0.93688 0.97593 0.99076 0.72229 0.84364 0.85241 0.91112 0.94192 0.92883 0.91281 0.96127 0.95394 0.92015 0.94868 0.92995 0.84863 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 19.25 74.32 1.43 -1.16 16 2 C -0.19 -4.53 13.24 30.02 0.40 -4.13 16 3 C -0.01 -0.35 5.72 -21.40 -0.12 -0.47 16 4 C -0.10 -2.61 9.75 22.52 0.22 -2.39 16 5 C -0.11 -3.12 9.68 22.23 0.22 -2.90 16 6 C -0.07 -2.01 4.89 -19.81 -0.10 -2.10 16 7 C 0.09 3.21 4.55 85.56 0.39 3.60 16 8 N -0.54 -22.96 4.73 -906.06 -4.29 -27.25 16 9 C 0.04 1.49 8.55 127.69 1.09 2.58 16 10 C 0.21 10.83 2.34 44.17 0.10 10.94 16 11 H 0.01 0.48 8.03 -2.39 -0.02 0.46 16 12 C -0.16 -7.64 8.28 71.98 0.60 -7.05 16 13 C -0.51 -28.29 7.94 25.60 0.20 -28.09 16 14 H 0.06 3.08 6.75 -2.91 -0.02 3.07 16 15 C 0.01 0.63 5.30 84.65 0.45 1.08 16 16 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 17 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C -0.12 -3.12 7.89 22.23 0.18 -2.94 16 22 C -0.10 -2.46 9.75 22.52 0.22 -2.24 16 23 H 0.26 1.76 7.80 -4.42 -0.03 1.72 16 24 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 25 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 26 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 27 H 0.04 1.39 6.88 -2.39 -0.02 1.37 16 28 H 0.05 2.25 6.53 -2.39 -0.02 2.23 16 29 H 0.07 2.34 5.90 -2.39 -0.01 2.33 16 30 H 0.02 0.78 6.28 -2.38 -0.01 0.76 16 31 H 0.03 1.18 6.75 -2.39 -0.02 1.16 16 32 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 33 H 0.03 1.53 6.39 -2.39 -0.02 1.52 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.13 3.26 7.99 -2.92 -0.02 3.24 16 36 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -62.14 299.85 4.31 -57.84 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.06 Total: 11.37 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 5.27 Total: -35.27 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -4.05 Total: -79.85 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -62.14 4.31 -57.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289459866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.156 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds