Wall clock time and date at job start Mon Mar 30 2020 18:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46775 * 2 1 4 4 H 1.08997 * 109.47829 * 55.07705 * 3 2 1 5 5 C 1.50703 * 109.47296 * 175.08113 * 3 2 1 6 6 H 1.07993 * 120.00260 * 119.99535 * 5 3 2 7 7 C 1.37878 * 119.99803 * 299.99789 * 5 3 2 8 8 N 1.31511 * 119.99763 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99955 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47102 * 89.99777 * 9 7 5 11 11 H 1.48500 * 109.47407 * 209.99781 * 9 7 5 12 12 H 1.48500 * 109.47296 * 330.00057 * 9 7 5 13 13 N 1.46904 * 109.47071 * 295.07737 * 3 2 1 14 14 C 1.46843 * 110.99985 * 294.29764 * 13 3 2 15 15 C 1.53042 * 109.52319 * 174.15995 * 14 13 3 16 16 C 1.53126 * 109.27817 * 59.17525 * 15 14 13 17 17 S 1.81398 * 109.52259 * 182.44081 * 16 15 14 18 18 C 1.81396 * 103.00145 * 185.00154 * 17 16 15 19 19 C 1.53110 * 109.16328 * 302.34740 * 16 15 14 20 20 C 1.46851 * 110.99965 * 170.08388 * 13 3 2 21 21 H 1.09001 * 109.47262 * 299.99827 * 1 2 3 22 22 H 1.08993 * 109.47229 * 60.00638 * 1 2 3 23 23 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47646 * 239.99890 * 2 1 3 25 25 H 1.09006 * 109.47156 * 119.99640 * 2 1 3 26 26 H 0.97005 * 119.99216 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.46616 * 54.14285 * 14 13 3 28 28 H 1.09003 * 109.46334 * 294.17420 * 14 13 3 29 29 H 1.09000 * 109.50147 * 299.23748 * 15 14 13 30 30 H 1.08995 * 109.50642 * 179.11981 * 15 14 13 31 31 H 1.09001 * 109.51698 * 62.25663 * 16 15 14 32 32 H 1.09003 * 109.47022 * 59.99722 * 18 17 16 33 33 H 1.08994 * 109.47337 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47032 * 300.00134 * 18 17 16 35 35 H 1.08996 * 109.50580 * 177.59540 * 19 16 15 36 36 H 1.09003 * 109.50805 * 297.71489 * 19 16 15 37 37 H 1.08998 * 109.46133 * 65.82522 * 20 13 3 38 38 H 1.09000 * 109.46380 * 305.85629 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 0.8425 5 6 3.5421 1.4444 0.1218 6 1 4.1463 1.8893 -0.6549 7 6 4.1449 0.8780 1.2249 8 7 5.4557 0.8792 1.3310 9 14 3.0997 0.1091 2.5687 10 1 2.8775 -1.3269 2.2623 11 1 3.7992 0.2344 3.8727 12 1 1.7916 0.8083 2.6395 13 7 1.6497 2.0998 -1.2545 14 6 2.3245 1.4832 -2.4037 15 6 1.7866 2.0931 -3.7002 16 6 2.0347 3.6041 -3.6891 17 16 1.3355 4.3443 -5.1904 18 6 1.8555 6.0780 -5.0709 19 6 1.3623 4.2148 -2.4566 20 6 1.9125 3.5434 -1.1961 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8935 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 5.8798 0.4804 2.1070 27 1 2.1366 0.4096 -2.4022 28 1 3.3972 1.6641 -2.3350 29 1 0.7165 1.9007 -3.7763 30 1 2.2988 1.6465 -4.5524 31 1 3.1069 3.7968 -3.6523 32 1 2.9440 6.1299 -5.0461 33 1 1.4855 6.6287 -5.9356 34 1 1.4499 6.5170 -4.1594 35 1 1.5714 5.2839 -2.4202 36 1 0.2855 4.0557 -2.5130 37 1 2.9871 3.7147 -1.1330 38 1 1.4253 3.9661 -0.3174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300860993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:31 Heat of formation + Delta-G solvation = -6.377706 kcal Electronic energy + Delta-G solvation = -16596.901331 eV Core-core repulsion = 14179.126245 eV Total energy + Delta-G solvation = -2417.775086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.63251 -34.98294 -32.07261 -31.08247 -30.46231 -28.77527 -27.09349 -23.84972 -22.80817 -22.17383 -19.97248 -19.11669 -16.66433 -16.38912 -15.55593 -14.53600 -14.29741 -14.10283 -13.79588 -13.77871 -13.35479 -13.16907 -12.92320 -12.66580 -12.22408 -11.92080 -11.75458 -11.50592 -11.20762 -10.92355 -10.80953 -10.66396 -10.47582 -10.11516 -10.04670 -9.59423 -9.54292 -9.49743 -9.21287 -8.59423 -7.61300 -7.18506 -6.15077 -4.16025 1.80313 2.68270 3.23736 3.34950 3.36842 4.34652 4.79460 4.98354 5.03142 5.11798 5.13810 5.17203 5.48680 5.62571 5.72051 5.90265 5.95391 5.98153 6.01717 6.04644 6.19802 6.20337 6.26941 6.38826 6.49571 6.66189 6.68182 6.78836 6.82282 6.93032 7.09053 7.22214 7.53193 8.06303 8.12489 8.41782 8.86634 9.48546 10.97589 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.006558 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.719102 B = 4268.754955 C = 4608.666660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.181 3.819 4 H 0.038 0.962 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.525 5.525 14 C 0.065 3.935 15 C -0.095 4.095 16 C -0.041 4.041 17 S -0.282 6.282 18 C -0.119 4.119 19 C -0.108 4.108 20 C 0.065 3.935 21 H 0.041 0.959 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 5.582 -8.424 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.074 3.926 4 H 0.056 0.944 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.249 5.249 14 C -0.065 4.065 15 C -0.134 4.134 16 C -0.170 4.170 17 S -0.054 6.054 18 C -0.288 4.288 19 C -0.147 4.147 20 C -0.065 4.065 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.058 5.034 -9.233 13.879 hybrid contribution 1.340 0.261 1.860 2.307 sum -7.718 5.294 -7.373 11.915 Atomic orbital electron populations 1.21735 0.97348 0.99360 1.01659 1.21922 0.94069 0.99268 1.00608 1.19707 0.94518 0.90608 0.87808 0.94413 1.21624 0.90616 1.39052 1.07127 0.90595 1.24986 0.94719 0.95304 0.97861 1.69916 1.08818 1.45007 1.29806 0.86851 0.80678 0.79880 0.80828 1.20497 1.22640 1.18864 1.62302 1.56885 1.01806 1.03879 1.21944 0.97309 0.98708 0.88576 1.21483 1.02353 0.90991 0.98573 1.23280 1.01444 0.99193 0.93054 1.86698 1.74951 1.08765 1.34945 1.23325 1.04225 0.95561 1.05647 1.21917 1.01170 0.98106 0.93531 1.21876 0.99269 0.89578 0.95821 0.94013 0.91873 0.94821 0.92247 0.93565 0.92653 0.90606 0.93510 0.90926 0.91576 0.89930 0.90762 0.88640 0.90513 0.92528 0.90498 0.94065 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.21 16 2 C -0.12 -2.56 4.82 -26.73 -0.13 -2.69 16 3 C 0.18 4.09 1.30 -68.86 -0.09 4.00 16 4 H 0.04 0.90 7.05 -51.93 -0.37 0.54 16 5 C -0.55 -14.50 7.81 -34.44 -0.27 -14.77 16 6 H 0.08 2.20 6.09 -52.49 -0.32 1.88 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 9 Si 0.89 21.57 24.41 -169.99 -4.15 17.42 16 10 H -0.28 -6.63 6.83 56.52 0.39 -6.24 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.52 -10.18 4.05 -228.07 -0.92 -11.11 16 14 C 0.06 1.19 4.78 -3.83 -0.02 1.17 16 15 C -0.09 -1.46 5.39 -26.64 -0.14 -1.60 16 16 C -0.04 -0.60 2.72 -26.61 -0.07 -0.68 16 17 S -0.28 -3.80 21.80 -107.50 -2.34 -6.14 16 18 C -0.12 -1.23 10.47 101.05 1.06 -0.17 16 19 C -0.11 -1.59 5.26 -26.65 -0.14 -1.73 16 20 C 0.07 1.17 5.19 -3.83 -0.02 1.15 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.24 6.22 -51.93 -0.32 0.91 16 25 H 0.05 1.05 3.22 -51.93 -0.17 0.88 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.08 1.41 6.12 -51.93 -0.32 1.09 16 28 H 0.05 0.98 6.38 -51.93 -0.33 0.65 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.75 7.23 -51.93 -0.38 0.38 16 35 H 0.06 0.75 7.06 -51.93 -0.37 0.38 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.83 7.29 -51.93 -0.38 0.45 16 38 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 LS Contribution 293.52 15.07 4.42 4.42 Total: -1.00 -28.15 293.52 -8.11 -36.25 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.33 Total: 0.75 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 0.44 Total: -15.55 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.15 Total: -37.15 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.15 Total: 17.42 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.34 Total: -6.14 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.15 -8.11 -36.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300860993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.877 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds