Wall clock time and date at job start Mon Mar 30 2020 18:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46775 * 2 1 4 4 H 1.08997 * 109.47829 * 55.07705 * 3 2 1 5 5 C 1.50703 * 109.47296 * 175.08113 * 3 2 1 6 6 H 1.07993 * 120.00260 * 119.99535 * 5 3 2 7 7 C 1.37878 * 119.99803 * 299.99789 * 5 3 2 8 8 N 1.31511 * 119.99763 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99955 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47102 * 89.99777 * 9 7 5 11 11 H 1.48500 * 109.47407 * 209.99781 * 9 7 5 12 12 H 1.48500 * 109.47296 * 330.00057 * 9 7 5 13 13 N 1.46904 * 109.47071 * 295.07737 * 3 2 1 14 14 C 1.46843 * 110.99985 * 294.29764 * 13 3 2 15 15 C 1.53042 * 109.52319 * 174.15995 * 14 13 3 16 16 C 1.53126 * 109.27817 * 59.17525 * 15 14 13 17 17 S 1.81398 * 109.52259 * 182.44081 * 16 15 14 18 18 C 1.81396 * 103.00145 * 185.00154 * 17 16 15 19 19 C 1.53110 * 109.16328 * 302.34740 * 16 15 14 20 20 C 1.46851 * 110.99965 * 170.08388 * 13 3 2 21 21 H 1.09001 * 109.47262 * 299.99827 * 1 2 3 22 22 H 1.08993 * 109.47229 * 60.00638 * 1 2 3 23 23 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47646 * 239.99890 * 2 1 3 25 25 H 1.09006 * 109.47156 * 119.99640 * 2 1 3 26 26 H 0.97005 * 119.99216 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.46616 * 54.14285 * 14 13 3 28 28 H 1.09003 * 109.46334 * 294.17420 * 14 13 3 29 29 H 1.09000 * 109.50147 * 299.23748 * 15 14 13 30 30 H 1.08995 * 109.50642 * 179.11981 * 15 14 13 31 31 H 1.09001 * 109.51698 * 62.25663 * 16 15 14 32 32 H 1.09003 * 109.47022 * 59.99722 * 18 17 16 33 33 H 1.08994 * 109.47337 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47032 * 300.00134 * 18 17 16 35 35 H 1.08996 * 109.50580 * 177.59540 * 19 16 15 36 36 H 1.09003 * 109.50805 * 297.71489 * 19 16 15 37 37 H 1.08998 * 109.46133 * 65.82522 * 20 13 3 38 38 H 1.09000 * 109.46380 * 305.85629 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 0.8425 5 6 3.5421 1.4444 0.1218 6 1 4.1463 1.8893 -0.6549 7 6 4.1449 0.8780 1.2249 8 7 5.4557 0.8792 1.3310 9 14 3.0997 0.1091 2.5687 10 1 2.8775 -1.3269 2.2623 11 1 3.7992 0.2344 3.8727 12 1 1.7916 0.8083 2.6395 13 7 1.6497 2.0998 -1.2545 14 6 2.3245 1.4832 -2.4037 15 6 1.7866 2.0931 -3.7002 16 6 2.0347 3.6041 -3.6891 17 16 1.3355 4.3443 -5.1904 18 6 1.8555 6.0780 -5.0709 19 6 1.3623 4.2148 -2.4566 20 6 1.9125 3.5434 -1.1961 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8935 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 5.8798 0.4804 2.1070 27 1 2.1366 0.4096 -2.4022 28 1 3.3972 1.6641 -2.3350 29 1 0.7165 1.9007 -3.7763 30 1 2.2988 1.6465 -4.5524 31 1 3.1069 3.7968 -3.6523 32 1 2.9440 6.1299 -5.0461 33 1 1.4855 6.6287 -5.9356 34 1 1.4499 6.5170 -4.1594 35 1 1.5714 5.2839 -2.4202 36 1 0.2855 4.0557 -2.5130 37 1 2.9871 3.7147 -1.1330 38 1 1.4253 3.9661 -0.3174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300860993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:31 Heat of formation + Delta-G solvation = -23.652854 kcal Electronic energy + Delta-G solvation = -16597.650437 eV Core-core repulsion = 14179.126245 eV Total energy + Delta-G solvation = -2418.524192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17461 -36.57930 -34.13636 -32.56018 -31.82326 -29.66186 -28.92166 -25.50742 -24.28805 -23.72441 -21.52272 -20.77015 -18.62133 -17.72239 -17.08500 -16.17722 -15.89361 -15.32898 -15.25920 -15.03869 -14.78452 -14.56622 -14.23091 -14.10976 -13.69738 -13.52005 -13.26534 -12.97174 -12.80998 -12.51122 -12.25330 -12.12903 -12.00895 -11.75479 -11.56286 -11.38493 -11.16637 -11.08689 -10.72652 -10.61314 -8.92779 -8.64281 -8.32079 -6.36116 0.75875 1.29928 1.35177 1.45416 1.66706 2.30220 3.03672 3.25898 3.73495 3.75330 4.18243 4.28120 4.33696 4.37044 4.38213 4.46295 4.56264 4.63051 4.66360 4.67621 4.82390 4.87339 4.89448 4.96996 5.03111 5.11803 5.20065 5.24518 5.28027 5.36980 5.47808 5.54865 5.63209 6.15305 6.38424 6.51104 6.72722 7.32465 8.84171 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.006558 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.719102 B = 4268.754955 C = 4608.666660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.537 4.537 6 H 0.037 0.963 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.303 1.303 12 H -0.245 1.245 13 N -0.514 5.514 14 C 0.069 3.931 15 C -0.084 4.084 16 C -0.042 4.042 17 S -0.292 6.292 18 C -0.114 4.114 19 C -0.094 4.094 20 C 0.064 3.936 21 H 0.044 0.956 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.011 0.989 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.009 0.991 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 6.023 -9.090 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.075 3.925 4 H 0.049 0.951 5 C -0.576 4.576 6 H 0.055 0.945 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.168 1.168 13 N -0.238 5.238 14 C -0.061 4.061 15 C -0.123 4.123 16 C -0.170 4.170 17 S -0.063 6.063 18 C -0.282 4.282 19 C -0.133 4.133 20 C -0.066 4.066 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.730 5.480 -9.920 16.311 hybrid contribution 2.231 0.227 1.953 2.973 sum -9.499 5.707 -7.968 13.649 Atomic orbital electron populations 1.21644 0.94246 1.01099 1.02173 1.21854 0.96785 0.97431 0.99894 1.19607 0.91464 0.92192 0.89194 0.95063 1.21897 0.92861 1.37266 1.05598 0.94531 1.25815 0.95690 0.96213 1.00465 1.70068 1.10835 1.47086 1.30871 0.85877 0.79647 0.79613 0.77444 1.19381 1.23105 1.16830 1.62360 1.56118 1.02445 1.02830 1.21896 0.95258 0.98942 0.89981 1.21357 1.02606 0.91578 0.96756 1.23127 1.00823 0.98882 0.94212 1.86717 1.74736 1.11406 1.33483 1.23440 1.04621 0.93055 1.07086 1.21816 1.01170 0.98828 0.91515 1.21935 0.97533 0.89074 0.98105 0.93680 0.91158 0.92511 0.92456 0.94860 0.92729 0.90845 0.97118 0.90063 0.90632 0.91290 0.90382 0.86593 0.89614 0.90530 0.89710 0.97295 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.80 71.98 0.71 -3.68 16 2 C -0.12 -4.98 4.82 30.59 0.15 -4.83 16 3 C 0.18 8.26 1.30 44.17 0.06 8.32 16 4 H 0.03 1.46 7.05 -2.39 -0.02 1.45 16 5 C -0.54 -29.56 7.81 25.60 0.20 -29.36 16 6 H 0.04 2.26 6.09 -2.91 -0.02 2.24 16 7 C 0.02 0.91 5.45 84.66 0.46 1.37 16 8 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 9 Si 0.95 44.62 24.41 68.60 1.67 46.29 16 10 H -0.27 -12.09 6.83 99.48 0.68 -11.41 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.24 -10.66 6.53 99.48 0.65 -10.01 16 13 N -0.51 -19.78 4.05 -875.48 -3.55 -23.33 16 14 C 0.07 2.58 4.78 86.33 0.41 3.00 16 15 C -0.08 -2.50 5.39 30.65 0.17 -2.34 16 16 C -0.04 -1.18 2.72 30.67 0.08 -1.09 16 17 S -0.29 -7.15 21.80 -56.49 -1.23 -8.38 16 18 C -0.11 -2.01 10.47 113.37 1.19 -0.82 16 19 C -0.09 -2.60 5.26 30.65 0.16 -2.44 16 20 C 0.06 2.29 5.19 86.33 0.45 2.74 16 21 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 2.19 7.75 -2.39 -0.02 2.17 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 2.33 6.22 -2.39 -0.01 2.32 16 25 H 0.03 1.45 3.22 -2.38 -0.01 1.44 16 26 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 27 H 0.07 2.74 6.12 -2.39 -0.01 2.73 16 28 H 0.01 0.47 6.38 -2.39 -0.02 0.46 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.39 7.23 -2.39 -0.02 1.37 16 35 H 0.08 1.84 7.06 -2.39 -0.02 1.82 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.01 0.37 7.29 -2.39 -0.02 0.35 16 38 H 0.07 2.47 8.02 -2.39 -0.02 2.46 16 Total: -1.00 -62.21 293.52 2.16 -60.05 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.93 Total: 13.05 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 4.03 Total: -29.13 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.25 Total: -81.89 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.67 Total: 46.29 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -1.23 Total: -8.38 kcal Total: -62.21 2.16 -60.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300860993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.401 kcal (2) G-P(sol) polarization free energy of solvation -62.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds