Wall clock time and date at job start Mon Mar 30 2020 18:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.09004 * 109.47058 * 302.74582 * 3 2 1 5 5 C 1.50697 * 109.47419 * 182.74617 * 3 2 1 6 6 H 1.07998 * 119.99854 * 240.00155 * 5 3 2 7 7 C 1.37875 * 120.00079 * 59.99791 * 5 3 2 8 8 N 1.31511 * 120.00135 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47026 * 60.00201 * 9 7 5 11 11 H 1.48500 * 109.47340 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47433 * 300.00207 * 9 7 5 13 13 N 1.46897 * 109.46800 * 62.74453 * 3 2 1 14 14 C 1.46848 * 111.00182 * 190.71315 * 13 3 2 15 15 C 1.53031 * 109.52960 * 174.16036 * 14 13 3 16 16 C 1.53119 * 109.27828 * 59.17675 * 15 14 13 17 17 S 1.81396 * 109.52698 * 182.44188 * 16 15 14 18 18 C 1.81394 * 103.00248 * 294.68540 * 17 16 15 19 19 C 1.53125 * 109.16072 * 302.35010 * 16 15 14 20 20 C 1.46847 * 111.00261 * 66.50546 * 13 3 2 21 21 H 1.08996 * 109.47175 * 174.67112 * 1 2 3 22 22 H 1.09008 * 109.46838 * 294.66722 * 1 2 3 23 23 H 1.08999 * 109.47856 * 54.66660 * 1 2 3 24 24 H 1.08996 * 109.47814 * 120.00178 * 2 1 3 25 25 H 1.09001 * 109.46655 * 240.01063 * 2 1 3 26 26 H 0.96993 * 120.00510 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46177 * 294.18007 * 14 13 3 28 28 H 1.09008 * 109.46127 * 54.14459 * 14 13 3 29 29 H 1.09008 * 109.50384 * 299.24224 * 15 14 13 30 30 H 1.08999 * 109.50937 * 179.11898 * 15 14 13 31 31 H 1.09002 * 109.51975 * 62.25371 * 16 15 14 32 32 H 1.09007 * 109.47257 * 59.99684 * 18 17 16 33 33 H 1.08996 * 109.47357 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47092 * 300.00026 * 18 17 16 35 35 H 1.08993 * 109.50285 * 297.70865 * 19 16 15 36 36 H 1.09005 * 109.50255 * 177.59167 * 19 16 15 37 37 H 1.09005 * 109.45569 * 305.85071 * 20 13 3 38 38 H 1.08994 * 109.46123 * 65.81927 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6370 1.9704 -0.8644 5 6 3.5454 1.4431 -0.0681 6 1 4.1216 1.8980 0.7241 7 6 4.1872 0.8630 -1.1416 8 7 3.4856 0.3095 -2.1064 9 14 6.0533 0.8631 -1.2256 10 1 6.6018 0.1436 -0.0481 11 1 6.4928 0.1833 -2.4706 12 1 6.5488 2.2630 -1.2252 13 7 1.6052 2.1155 1.2312 14 6 1.8530 3.5610 1.1565 15 6 1.2581 4.2464 2.3887 16 6 1.9007 3.6640 3.6507 17 16 1.1489 4.4203 5.1181 18 6 1.6523 6.1579 4.9850 19 6 1.6697 2.1506 3.6797 20 6 2.2528 1.5261 2.4100 21 1 -0.3633 -1.0232 -0.0954 22 1 -0.3633 0.4289 0.9340 23 1 -0.3635 0.5943 -0.8383 24 1 1.8934 -0.5138 0.8899 25 1 1.8932 -0.5137 -0.8901 26 1 3.9371 -0.0984 -2.8618 27 1 2.9270 3.7441 1.1221 28 1 1.3872 3.9634 0.2568 29 1 0.1819 4.0753 2.4163 30 1 1.4559 5.3172 2.3407 31 1 2.9712 3.8690 3.6421 32 1 1.2689 6.5771 4.0547 33 1 1.2498 6.7184 5.8287 34 1 2.7404 6.2224 4.9914 35 1 0.6001 1.9466 3.7276 36 1 2.1616 1.7241 4.5540 37 1 2.0772 0.4503 2.4209 38 1 3.3248 1.7186 2.3698 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300860995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:34 Heat of formation + Delta-G solvation = -14.419524 kcal Electronic energy + Delta-G solvation = -16547.266420 eV Core-core repulsion = 14129.142615 eV Total energy + Delta-G solvation = -2418.123805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.47884 -34.75653 -31.94718 -30.74199 -30.34389 -28.76080 -26.56214 -23.93399 -22.69529 -22.17440 -19.69578 -18.96437 -16.47737 -16.18014 -15.31729 -14.44362 -14.18093 -14.08356 -13.76809 -13.64060 -13.30350 -13.05732 -12.73829 -12.67077 -11.95516 -11.62288 -11.50600 -11.15741 -11.07492 -10.82763 -10.74586 -10.55382 -10.38006 -10.25049 -9.87153 -9.67434 -9.56037 -9.27766 -9.06474 -8.38201 -7.60144 -7.12356 -6.00753 -4.14386 1.81383 2.69527 3.25325 3.31101 3.33274 4.37132 4.90290 5.01933 5.10547 5.11672 5.15791 5.23954 5.51016 5.63101 5.76875 5.97390 6.02784 6.06463 6.19679 6.29118 6.34866 6.47077 6.50707 6.60521 6.70104 6.73803 6.84633 7.12311 7.18944 7.36054 7.59464 7.75485 7.96747 8.14267 8.30879 8.46180 8.95565 9.53285 10.98447 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.006825 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.459784 B = 4101.795091 C = 4675.019006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.532 5.532 14 C 0.067 3.933 15 C -0.108 4.108 16 C -0.040 4.040 17 S -0.283 6.283 18 C -0.119 4.119 19 C -0.096 4.096 20 C 0.068 3.932 21 H 0.024 0.976 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.091 0.909 26 H 0.262 0.738 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 6.669 9.446 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.257 5.257 14 C -0.064 4.064 15 C -0.148 4.148 16 C -0.168 4.168 17 S -0.054 6.054 18 C -0.288 4.288 19 C -0.135 4.135 20 C -0.063 4.063 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.561 6.065 10.149 12.673 hybrid contribution 2.800 0.766 -1.119 3.111 sum -1.761 6.831 9.031 11.459 Atomic orbital electron populations 1.21692 0.98800 0.98326 1.00576 1.21590 0.92232 0.99101 1.01930 1.19276 0.92651 0.91088 0.86148 0.94432 1.21703 0.92744 1.37663 1.06296 0.92653 1.24896 0.97849 0.95029 0.95540 1.69857 1.35056 1.37594 1.09779 0.86760 0.86303 0.78145 0.77404 1.20330 1.21198 1.20466 1.62399 1.57396 1.01587 1.04290 1.21842 0.98476 0.90161 0.95903 1.21928 1.01344 0.98048 0.93473 1.23280 1.00983 0.99229 0.93350 1.86713 1.73395 1.07878 1.37440 1.23321 1.04197 0.95604 1.05633 1.21502 1.02432 0.90834 0.98733 1.21895 0.96630 0.98996 0.88735 0.95657 0.93473 0.94235 0.94866 0.89057 0.92815 0.94777 0.91464 0.90481 0.92722 0.90157 0.90513 0.88654 0.90850 0.90893 0.91784 0.90579 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.71 37.16 0.36 -2.38 16 2 C -0.11 -2.56 5.12 -26.73 -0.14 -2.69 16 3 C 0.21 5.13 1.72 -68.87 -0.12 5.01 16 4 H 0.04 1.00 7.97 -51.93 -0.41 0.59 16 5 C -0.55 -14.17 7.24 -34.44 -0.25 -14.42 16 6 H 0.06 1.45 5.84 -52.49 -0.31 1.14 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.46 11.30 55.43 0.63 -23.83 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.53 -10.79 4.05 -228.08 -0.92 -11.72 16 14 C 0.07 1.24 5.20 -3.84 -0.02 1.22 16 15 C -0.11 -1.65 5.26 -26.65 -0.14 -1.79 16 16 C -0.04 -0.59 2.72 -26.61 -0.07 -0.67 16 17 S -0.28 -3.87 21.80 -107.50 -2.34 -6.21 16 18 C -0.12 -1.24 10.47 101.05 1.06 -0.18 16 19 C -0.10 -1.52 5.39 -26.65 -0.14 -1.66 16 20 C 0.07 1.28 4.78 -3.83 -0.02 1.26 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.91 7.84 -51.92 -0.41 0.50 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 25 H 0.09 2.38 6.00 -51.93 -0.31 2.07 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.03 0.68 7.34 -51.93 -0.38 0.30 16 28 H 0.07 1.26 8.01 -51.92 -0.42 0.84 16 29 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.05 0.74 7.06 -51.93 -0.37 0.37 16 31 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 32 H 0.08 0.76 7.23 -51.92 -0.38 0.39 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.49 6.19 -51.93 -0.32 1.17 16 38 H 0.04 0.80 6.34 -51.93 -0.33 0.47 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -26.45 300.52 -9.18 -35.63 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.48 Total: 0.35 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 0.42 Total: -14.54 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.30 Total: -35.55 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.34 Total: -6.21 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.45 -9.18 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300860995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.212 kcal (2) G-P(sol) polarization free energy of solvation -26.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds