Wall clock time and date at job start Mon Mar 30 2020 18:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 102.99893 * 2 1 4 4 C 1.53120 * 109.52184 * 175.00117 * 3 2 1 5 5 C 1.53039 * 109.27940 * 177.62593 * 4 3 2 6 6 N 1.46844 * 109.52178 * 300.81941 * 5 4 3 7 7 C 1.46901 * 111.00526 * 185.84060 * 6 5 4 8 8 C 1.52992 * 109.47859 * 170.00090 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.46848 * 111.20087 * 61.74385 * 6 5 4 19 19 C 1.53048 * 109.52064 * 298.25789 * 18 6 5 20 20 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47362 * 299.99756 * 1 2 3 22 22 H 1.09001 * 109.47539 * 60.00300 * 1 2 3 23 23 H 1.09002 * 109.52530 * 54.87820 * 3 2 1 24 24 H 1.09004 * 109.50479 * 57.68181 * 4 3 2 25 25 H 1.08998 * 109.50625 * 297.56495 * 4 3 2 26 26 H 1.09003 * 109.46575 * 180.80459 * 5 4 3 27 27 H 1.08995 * 109.45502 * 60.82603 * 5 4 3 28 28 H 1.09002 * 109.46980 * 49.99749 * 7 6 5 29 29 H 1.09001 * 109.46628 * 290.00171 * 7 6 5 30 30 H 1.09002 * 109.47103 * 59.99734 * 8 7 6 31 31 H 1.08998 * 109.46862 * 300.00546 * 8 7 6 32 32 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 33 33 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.46339 * 58.26808 * 18 6 5 36 36 H 1.08994 * 109.46869 * 178.24483 * 18 6 5 37 37 H 1.08998 * 109.49998 * 299.23732 * 19 18 6 38 38 H 1.08994 * 109.50211 * 179.11499 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7379 1.9427 0.1258 5 6 4.0811 3.4329 0.0656 6 7 3.6094 3.9941 -1.2067 7 6 4.0429 5.3893 -1.3598 8 6 3.7538 5.8598 -2.7866 9 6 4.2047 7.3131 -2.9457 10 6 3.9205 7.7763 -4.3513 11 1 3.4635 7.1017 -5.0601 12 6 4.2429 9.0616 -4.7320 13 7 4.7989 9.8832 -3.8687 14 14 3.8900 9.6359 -6.4741 15 1 2.5282 10.2251 -6.5348 16 1 4.8903 10.6596 -6.8702 17 1 3.9709 8.4798 -7.4025 18 6 2.1505 3.8800 -1.3291 19 6 1.7496 2.4030 -1.3105 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.7280 2.2554 0.8403 24 1 4.2337 1.4217 -0.6934 25 1 4.0744 1.5299 1.0768 26 1 5.1611 3.5602 0.1405 27 1 3.5960 3.9508 0.8930 28 1 5.1126 5.4610 -1.1633 29 1 3.5008 6.0177 -0.6531 30 1 2.6840 5.7881 -2.9830 31 1 4.2958 5.2313 -3.4931 32 1 5.2744 7.3852 -2.7490 33 1 3.6623 7.9412 -2.2390 34 1 5.0261 10.7874 -4.1367 35 1 1.6746 4.3958 -0.4951 36 1 1.8281 4.3319 -2.2671 37 1 2.2141 1.8894 -2.1522 38 1 0.6655 2.3193 -1.3855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300906851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:37 Heat of formation + Delta-G solvation = -23.739595 kcal Electronic energy + Delta-G solvation = -15527.219707 eV Core-core repulsion = 13108.691753 eV Total energy + Delta-G solvation = -2418.527954 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.97412 -34.82272 -32.99033 -31.20353 -30.65408 -29.06632 -26.70388 -24.24225 -23.18696 -22.00439 -19.94844 -19.80490 -16.80374 -16.28060 -15.49080 -15.10181 -14.64947 -14.46026 -14.31808 -13.93248 -13.84281 -13.70831 -13.34851 -12.74449 -12.28345 -12.10202 -11.88163 -11.40760 -11.30912 -11.21088 -10.93547 -10.76567 -10.69318 -10.47889 -10.38106 -9.91709 -9.57126 -9.31136 -9.03599 -8.32915 -8.09104 -7.86743 -5.98256 -4.00200 1.49260 2.37980 3.33118 3.39293 3.43235 4.07717 4.48013 4.54265 4.57811 4.87685 4.89506 4.98954 5.13637 5.32126 5.37608 5.39999 5.41193 5.51973 5.58508 5.60391 5.78630 5.83892 5.97727 6.03027 6.06673 6.23206 6.32348 6.71564 6.78193 7.13389 7.36109 7.39382 7.70233 7.85137 8.02347 8.45769 9.07080 9.63745 11.13237 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.048298 B = 0.003812 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.593421 B = 7343.466481 C = 7731.273528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.271 6.271 3 C -0.048 4.048 4 C -0.095 4.095 5 C 0.060 3.940 6 N -0.538 5.538 7 C 0.057 3.943 8 C -0.105 4.105 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.056 3.944 19 C -0.110 4.110 20 H 0.098 0.902 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.029 0.971 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -17.061 9.670 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.042 6.042 3 C -0.177 4.177 4 C -0.134 4.134 5 C -0.070 4.070 6 N -0.263 5.263 7 C -0.070 4.070 8 C -0.143 4.143 9 C -0.016 4.016 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.074 4.074 19 C -0.149 4.149 20 H 0.117 0.883 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.754 -18.089 9.335 21.154 hybrid contribution -1.451 1.949 -0.207 2.439 sum -7.205 -16.140 9.129 19.893 Atomic orbital electron populations 1.23365 0.94427 1.06216 1.04931 1.86816 1.07209 1.12227 1.97943 1.23271 1.00655 0.92553 1.01180 1.21416 0.92079 0.96889 1.02981 1.22059 1.00722 0.93608 0.90634 1.61994 1.11351 1.20352 1.32587 1.22286 1.00086 0.85449 0.99197 1.21661 1.00158 0.99475 0.92997 1.19075 0.96548 0.89238 0.96745 1.21256 1.40006 0.97263 0.97109 0.92681 1.25030 0.95292 0.96901 0.97315 1.69967 1.42631 1.06522 1.34522 0.86599 0.77957 0.78512 0.84983 1.20727 1.21240 1.19829 1.22134 0.88302 0.95143 1.01851 1.21927 1.00172 0.96167 0.96674 0.88328 0.90722 0.90337 0.90025 0.90057 0.90922 0.90146 0.95144 0.91092 0.95374 0.93512 0.92524 0.96589 0.96881 0.93054 0.95286 0.89373 0.89715 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.47 101.05 1.06 0.12 16 2 S -0.27 -2.87 21.80 -107.50 -2.34 -5.21 16 3 C -0.05 -0.51 2.72 -26.61 -0.07 -0.58 16 4 C -0.09 -1.04 5.39 -26.65 -0.14 -1.18 16 5 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 6 N -0.54 -7.98 4.66 -234.67 -1.09 -9.07 16 7 C 0.06 0.98 4.96 -3.83 -0.02 0.97 16 8 C -0.10 -2.18 5.08 -26.74 -0.14 -2.32 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 18 C 0.06 0.75 5.29 -3.83 -0.02 0.73 16 19 C -0.11 -1.25 5.26 -26.65 -0.14 -1.39 16 20 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 21 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.08 0.58 7.24 -51.92 -0.38 0.20 16 23 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 29 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 1.29 6.21 -51.93 -0.32 0.97 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.63 7.06 -51.93 -0.37 0.27 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -29.99 311.44 -9.91 -39.91 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.84 Total: -4.53 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.04 Total: -16.15 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.36 Total: -35.51 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.34 Total: -5.21 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.99 -9.91 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300906851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.167 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds